Wall clock time and date at job start Tue Mar 31 2020 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09003 * 109.46814 * 30.00042 * 6 5 2 8 8 C 1.50697 * 109.47146 * 149.99537 * 6 5 2 9 9 O 1.21290 * 119.99850 * 5.00278 * 8 6 5 10 10 N 1.34774 * 120.00414 * 184.99950 * 8 6 5 11 11 C 1.46494 * 120.00512 * 180.02562 * 10 8 6 12 12 C 1.50695 * 109.47194 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00112 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47187 * 89.99964 * 16 14 12 18 18 H 1.48497 * 109.47393 * 210.00073 * 16 14 12 19 19 H 1.48505 * 109.47073 * 329.99926 * 16 14 12 20 20 C 1.50696 * 109.47083 * 269.99993 * 6 5 2 21 21 C 1.38240 * 119.99577 * 324.72220 * 20 6 5 22 22 C 1.38240 * 119.99315 * 179.81305 * 21 20 6 23 23 C 1.38228 * 120.00315 * 0.39693 * 22 21 20 24 24 C 1.38236 * 120.00125 * 359.85727 * 23 22 21 25 25 C 1.38229 * 120.00100 * 145.00571 * 20 6 5 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 33 33 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 35 35 H 0.96999 * 119.99844 * 359.97438 * 10 8 6 36 36 H 1.09005 * 109.47264 * 300.00592 * 11 10 8 37 37 H 1.09003 * 109.47031 * 59.99959 * 11 10 8 38 38 H 0.97002 * 120.00456 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.00678 * 0.02562 * 21 20 6 40 40 H 1.08004 * 119.99367 * 180.23589 * 22 21 20 41 41 H 1.08003 * 120.00006 * 179.83203 * 23 22 21 42 42 H 1.08003 * 120.00300 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00219 * 359.96677 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.4555 0.9956 -2.2524 8 6 2.6272 -0.3210 -3.4556 9 8 3.5880 -1.0201 -3.2122 10 7 2.4919 0.2376 -4.6746 11 6 3.5049 0.0002 -5.7058 12 6 3.1205 0.7324 -6.9657 13 1 2.2122 1.3158 -6.9954 14 6 3.9285 0.6574 -8.0804 15 7 5.0344 -0.0535 -8.0444 16 14 3.4517 1.5643 -9.6423 17 1 4.0334 2.9304 -9.6187 18 1 3.9704 0.8258 -10.8216 19 1 1.9721 1.6578 -9.7284 20 6 0.2764 -0.6879 -2.8268 21 6 0.0254 -2.0259 -2.5861 22 6 -1.1764 -2.5850 -2.9788 23 6 -2.1236 -1.8083 -3.6193 24 6 -1.8704 -0.4717 -3.8646 25 6 -0.6702 0.0884 -3.4687 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 1.7232 0.7963 -4.8695 36 1 4.4715 0.3627 -5.3559 37 1 3.5705 -1.0682 -5.9117 38 1 5.6031 -0.1060 -8.8285 39 1 0.7666 -2.6334 -2.0884 40 1 -1.3741 -3.6294 -2.7873 41 1 -3.0614 -2.2459 -3.9284 42 1 -2.6103 0.1351 -4.3655 43 1 -0.4724 1.1327 -3.6603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427607176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:03 Heat of formation + Delta-G solvation = -66.585276 kcal Electronic energy + Delta-G solvation = -23922.021494 eV Core-core repulsion = 20545.978179 eV Total energy + Delta-G solvation = -3376.043315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33272 -38.34422 -38.04637 -34.19745 -33.65502 -32.41415 -31.45369 -30.79324 -28.09379 -27.45817 -27.33168 -25.97006 -22.72203 -22.53209 -21.62144 -20.07155 -19.48780 -17.49087 -16.97479 -16.63869 -15.77440 -15.62662 -15.04025 -14.84220 -14.60125 -14.41899 -14.11392 -13.83701 -13.34087 -13.30571 -13.18802 -12.67135 -12.65019 -12.32536 -12.20274 -11.95863 -11.85579 -11.75537 -11.69488 -11.60063 -11.03716 -11.01358 -10.96769 -10.86327 -10.52247 -10.28833 -9.76796 -9.38957 -9.14351 -8.83201 -8.72484 -8.46345 -7.86934 -6.15348 -4.22226 1.34939 1.48497 3.24638 3.26690 3.31175 3.33219 3.39685 3.81985 4.29860 4.50269 4.69351 4.78318 4.82679 4.91686 4.98165 5.04233 5.17547 5.20682 5.24704 5.43769 5.46050 5.50937 5.53344 5.62540 5.65333 5.71274 5.75863 5.80193 5.97935 5.98916 6.11172 6.20183 6.21987 6.49486 6.57330 6.61653 7.04406 7.20887 7.34968 7.45323 7.53206 7.68397 7.97759 8.61793 8.79045 9.09329 9.44050 10.94892 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004639 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.158101 B = 6033.806621 C = 7031.947718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 C -0.181 4.181 4 C -0.135 4.135 5 O -0.336 6.336 6 C 0.108 3.892 7 H 0.092 0.908 8 C 0.506 3.494 9 O -0.532 6.532 10 N -0.707 5.707 11 C 0.252 3.748 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.098 4.098 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.389 0.611 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 1.225 15.347 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.063 3.937 3 C -0.239 4.239 4 C -0.192 4.192 5 O -0.254 6.254 6 C 0.047 3.953 7 H 0.110 0.890 8 C 0.288 3.712 9 O -0.409 6.409 10 N -0.356 5.356 11 C 0.131 3.869 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.221 0.779 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.370 0.483 15.404 20.403 hybrid contribution -0.751 0.967 -1.117 1.657 sum -14.120 1.450 14.287 20.140 Atomic orbital electron populations 1.22554 0.95542 1.02916 1.02373 1.21594 0.93216 0.92144 0.86710 1.22476 1.02693 0.96394 1.02307 1.21721 1.02224 1.00733 0.94532 1.88141 1.73383 1.52520 1.11345 1.20845 0.90694 0.97812 0.85994 0.89019 1.19971 0.86433 0.81411 0.83353 1.90680 1.31880 1.38105 1.80242 1.46355 1.27322 1.49966 1.11978 1.19122 0.86490 0.97319 0.83922 1.21200 1.08662 1.31641 0.96516 0.91923 1.24941 0.94729 0.95298 0.98970 1.69976 1.12700 1.39291 1.30278 0.86423 0.78753 0.79580 0.82208 1.20460 1.20996 1.19740 1.20080 0.94943 0.95001 0.99888 1.21010 0.96834 0.94393 0.98298 1.21139 0.94015 0.99734 0.99145 1.21138 0.99310 0.94245 0.99082 1.21048 0.97092 0.95388 1.00141 1.20979 0.93668 0.99800 0.98611 0.91784 0.91693 0.92055 0.91451 0.91319 0.92140 0.91817 0.91591 0.91309 0.77862 0.95433 0.95472 0.92445 0.85444 0.86180 0.86322 0.86020 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 7.48 37.16 0.28 -1.55 16 2 C 0.10 1.23 1.13 -90.62 -0.10 1.12 16 3 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 4 C -0.13 -1.40 8.84 37.16 0.33 -1.07 16 5 O -0.34 -5.40 8.38 -55.09 -0.46 -5.86 16 6 C 0.11 1.73 2.06 -29.04 -0.06 1.67 16 7 H 0.09 1.26 5.44 -51.93 -0.28 0.98 16 8 C 0.51 10.77 7.17 -10.99 -0.08 10.69 16 9 O -0.53 -13.71 16.51 -14.31 -0.24 -13.95 16 10 N -0.71 -15.41 5.50 -61.48 -0.34 -15.74 16 11 C 0.25 6.81 5.43 -5.20 -0.03 6.78 16 12 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.10 -1.42 2.79 -104.63 -0.29 -1.71 16 21 C -0.09 -1.26 8.80 -39.58 -0.35 -1.61 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.42 9.00 -39.58 -0.36 -1.77 16 26 H 0.06 0.69 5.77 -51.93 -0.30 0.39 16 27 H 0.06 0.71 7.76 -51.93 -0.40 0.30 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.65 6.10 -51.93 -0.32 0.33 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.39 7.32 8.15 -40.82 -0.33 6.99 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 1.95 7.64 -52.49 -0.40 1.55 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -33.14 354.60 -8.58 -41.72 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.64 Total: 6.09 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.96 Total: -7.98 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.40 Total: -41.27 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.70 Total: -19.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.14 -8.58 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.866 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds