Wall clock time and date at job start Tue Mar 31 2020 07:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09003 * 109.46814 * 30.00042 * 6 5 2 8 8 C 1.50697 * 109.47146 * 149.99537 * 6 5 2 9 9 O 1.21290 * 119.99850 * 5.00278 * 8 6 5 10 10 N 1.34774 * 120.00414 * 184.99950 * 8 6 5 11 11 C 1.46494 * 120.00512 * 180.02562 * 10 8 6 12 12 C 1.50695 * 109.47194 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00112 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47187 * 89.99964 * 16 14 12 18 18 H 1.48497 * 109.47393 * 210.00073 * 16 14 12 19 19 H 1.48505 * 109.47073 * 329.99926 * 16 14 12 20 20 C 1.50696 * 109.47083 * 269.99993 * 6 5 2 21 21 C 1.38240 * 119.99577 * 324.72220 * 20 6 5 22 22 C 1.38240 * 119.99315 * 179.81305 * 21 20 6 23 23 C 1.38228 * 120.00315 * 0.39693 * 22 21 20 24 24 C 1.38236 * 120.00125 * 359.85727 * 23 22 21 25 25 C 1.38229 * 120.00100 * 145.00571 * 20 6 5 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 33 33 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 35 35 H 0.96999 * 119.99844 * 359.97438 * 10 8 6 36 36 H 1.09005 * 109.47264 * 300.00592 * 11 10 8 37 37 H 1.09003 * 109.47031 * 59.99959 * 11 10 8 38 38 H 0.97002 * 120.00456 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.00678 * 0.02562 * 21 20 6 40 40 H 1.08004 * 119.99367 * 180.23589 * 22 21 20 41 41 H 1.08003 * 120.00006 * 179.83203 * 23 22 21 42 42 H 1.08003 * 120.00300 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00219 * 359.96677 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.4555 0.9956 -2.2524 8 6 2.6272 -0.3210 -3.4556 9 8 3.5880 -1.0201 -3.2122 10 7 2.4919 0.2376 -4.6746 11 6 3.5049 0.0002 -5.7058 12 6 3.1205 0.7324 -6.9657 13 1 2.2122 1.3158 -6.9954 14 6 3.9285 0.6574 -8.0804 15 7 5.0344 -0.0535 -8.0444 16 14 3.4517 1.5643 -9.6423 17 1 4.0334 2.9304 -9.6187 18 1 3.9704 0.8258 -10.8216 19 1 1.9721 1.6578 -9.7284 20 6 0.2764 -0.6879 -2.8268 21 6 0.0254 -2.0259 -2.5861 22 6 -1.1764 -2.5850 -2.9788 23 6 -2.1236 -1.8083 -3.6193 24 6 -1.8704 -0.4717 -3.8646 25 6 -0.6702 0.0884 -3.4687 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 1.7232 0.7963 -4.8695 36 1 4.4715 0.3627 -5.3559 37 1 3.5705 -1.0682 -5.9117 38 1 5.6031 -0.1060 -8.8285 39 1 0.7666 -2.6334 -2.0884 40 1 -1.3741 -3.6294 -2.7873 41 1 -3.0614 -2.2459 -3.9284 42 1 -2.6103 0.1351 -4.3655 43 1 -0.4724 1.1327 -3.6603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427607176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:02 Heat of formation + Delta-G solvation = -87.307934 kcal Electronic energy + Delta-G solvation = -23922.920095 eV Core-core repulsion = 20545.978179 eV Total energy + Delta-G solvation = -3376.941917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58398 -39.76195 -39.22314 -36.19721 -34.77658 -34.36639 -32.60899 -31.74662 -29.76276 -28.57076 -28.17089 -27.39992 -24.66338 -23.51027 -22.79488 -21.57959 -20.71792 -19.19180 -18.06420 -17.87817 -17.59526 -16.90491 -16.62533 -16.28700 -15.75416 -15.72586 -15.51812 -15.10830 -14.60339 -14.33458 -14.27688 -14.14219 -13.94003 -13.80468 -13.56463 -13.16308 -13.02421 -12.93085 -12.73915 -12.71318 -12.59880 -12.57497 -12.23566 -11.98662 -11.95246 -11.54203 -11.48627 -11.01264 -10.81290 -10.54418 -9.91163 -9.79113 -9.59755 -8.29261 -6.46461 0.35501 0.52121 1.43222 1.46148 1.57281 1.62929 1.98183 2.39302 2.79459 3.05655 3.13635 3.57935 3.81639 3.83686 3.95894 4.00394 4.10502 4.13878 4.20813 4.32040 4.60150 4.64628 4.66810 4.71744 4.80669 4.83019 4.93237 4.93982 5.03548 5.07665 5.15086 5.17504 5.20121 5.34473 5.38792 5.43869 5.55863 5.62418 5.62805 5.63728 5.81934 6.10756 6.22971 6.62625 6.82975 7.21349 7.39357 8.83169 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004639 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.158101 B = 6033.806621 C = 7031.947718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 C -0.181 4.181 4 C -0.134 4.134 5 O -0.367 6.367 6 C 0.126 3.874 7 H 0.117 0.883 8 C 0.500 3.500 9 O -0.587 6.587 10 N -0.697 5.697 11 C 0.269 3.731 12 C -0.554 4.554 13 H 0.086 0.914 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.986 3.014 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.254 1.254 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.117 4.117 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.407 0.593 36 H -0.011 1.011 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 3.226 15.078 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.053 3.947 3 C -0.238 4.238 4 C -0.191 4.191 5 O -0.286 6.286 6 C 0.065 3.935 7 H 0.134 0.866 8 C 0.286 3.714 9 O -0.467 6.467 10 N -0.348 5.348 11 C 0.146 3.854 12 C -0.592 4.592 13 H 0.104 0.896 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.809 3.191 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.177 1.177 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.135 4.135 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.243 0.757 36 H 0.007 0.993 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.008 2.508 15.167 22.926 hybrid contribution 0.370 0.270 -0.941 1.047 sum -16.638 2.778 14.226 22.067 Atomic orbital electron populations 1.22467 0.93882 1.02693 1.03467 1.21947 0.94591 0.92645 0.85504 1.22485 1.01605 0.95909 1.03779 1.21770 1.01351 1.00861 0.95127 1.88114 1.74337 1.53753 1.12351 1.20572 0.89169 0.99303 0.84438 0.86579 1.21058 0.86764 0.79672 0.83949 1.90641 1.34495 1.40294 1.81290 1.46052 1.26864 1.50405 1.11501 1.18573 0.86470 0.94627 0.85709 1.21569 1.09528 1.31702 0.96383 0.89648 1.26080 0.94340 0.95959 1.03113 1.70147 1.14217 1.41025 1.31626 0.85141 0.79330 0.78010 0.76648 1.19442 1.21033 1.17738 1.19960 0.94586 0.95251 1.01573 1.20985 0.97559 0.94611 0.99530 1.21374 0.93426 1.00838 0.98982 1.21531 0.99929 0.94283 0.97699 1.21447 0.97053 0.95751 0.99297 1.21254 0.93666 1.00703 0.97868 0.91945 0.92609 0.89558 0.88518 0.93081 0.92047 0.92317 0.93033 0.88224 0.75742 0.99300 0.99749 0.92229 0.87759 0.84571 0.83401 0.83069 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 7.48 71.98 0.54 -2.62 16 2 C 0.09 2.12 1.13 -10.79 -0.01 2.11 16 3 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 4 C -0.13 -2.71 8.84 71.98 0.64 -2.07 16 5 O -0.37 -12.18 8.38 -129.99 -1.09 -13.27 16 6 C 0.13 4.08 2.06 29.10 0.06 4.14 16 7 H 0.12 3.09 5.44 -2.39 -0.01 3.07 16 8 C 0.50 22.26 7.17 87.66 0.63 22.88 16 9 O -0.59 -32.42 16.51 15.93 0.26 -32.15 16 10 N -0.70 -31.28 5.50 -466.80 -2.57 -33.85 16 11 C 0.27 15.27 5.43 85.63 0.46 15.73 16 12 C -0.55 -30.48 9.28 25.60 0.24 -30.25 16 13 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 14 C 0.00 0.26 5.46 84.66 0.46 0.72 16 15 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 16 Si 0.99 42.34 29.54 68.60 2.03 44.36 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 20 C -0.11 -3.19 2.79 -19.87 -0.06 -3.25 16 21 C -0.11 -3.17 8.80 22.27 0.20 -2.97 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 23 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.12 -2.65 9.00 22.27 0.20 -2.45 16 26 H 0.06 1.20 5.77 -2.39 -0.01 1.18 16 27 H 0.05 1.15 7.76 -2.39 -0.02 1.13 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.22 6.10 -2.39 -0.01 1.20 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 15.09 8.15 -92.71 -0.76 14.33 16 36 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.10 3.43 7.64 -2.91 -0.02 3.41 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -76.64 354.60 3.79 -72.85 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.24 Total: 26.65 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.63 Total: -7.98 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -2.28 Total: -90.47 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.83 Total: -45.42 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.64 3.79 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.454 kcal (2) G-P(sol) polarization free energy of solvation -76.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds