Wall clock time and date at job start Tue Mar 31 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.53001 * 109.47049 * 185.00237 * 3 2 1 6 6 C 1.50700 * 109.47108 * 65.00259 * 5 3 2 7 7 O 1.21281 * 120.00009 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99696 * 180.02562 * 6 5 3 9 9 C 1.46501 * 119.99696 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00002 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00142 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46897 * 89.99939 * 14 12 10 16 16 H 1.48493 * 109.47074 * 210.00119 * 14 12 10 17 17 H 1.48501 * 109.47022 * 329.99959 * 14 12 10 18 18 C 1.50698 * 109.46933 * 65.00194 * 3 2 1 19 19 C 1.38274 * 119.94472 * 59.72993 * 18 3 2 20 20 C 1.38145 * 120.05499 * 179.72845 * 19 18 3 21 21 C 1.38735 * 119.94439 * 0.54000 * 20 19 18 22 22 O 1.35896 * 120.05711 * 179.75593 * 21 20 19 23 23 C 1.42900 * 116.99725 * 359.97438 * 22 21 20 24 24 C 1.38734 * 119.88636 * 359.72808 * 21 20 19 25 25 C 1.38140 * 119.94848 * 0.02562 * 24 21 20 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 31 31 H 1.08997 * 109.46909 * 185.00358 * 5 3 2 32 32 H 1.09002 * 109.46829 * 305.00193 * 5 3 2 33 33 H 0.97002 * 120.00267 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.47304 * 299.99492 * 9 8 6 35 35 H 1.09002 * 109.47343 * 59.99884 * 9 8 6 36 36 H 0.96996 * 119.99794 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.96705 * 359.97438 * 19 18 3 38 38 H 1.07996 * 120.02790 * 180.27310 * 20 19 18 39 39 H 1.08991 * 109.47391 * 60.00393 * 23 22 21 40 40 H 1.09007 * 109.47003 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.47093 * 300.00167 * 23 22 21 42 42 H 1.07999 * 120.02607 * 179.97438 * 24 21 20 43 43 H 1.08002 * 119.97714 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1258 6 6 3.9589 0.8822 -1.4673 7 8 3.1043 0.5157 -2.2460 8 7 5.2610 0.7857 -1.8014 9 6 5.6441 0.2398 -3.1058 10 6 7.1460 0.2415 -3.2297 11 1 7.7544 0.6125 -2.4181 12 6 7.7435 -0.2307 -4.3791 13 7 7.0027 -0.6830 -5.3671 14 14 9.6052 -0.2280 -4.5329 15 1 10.1460 -1.5127 -4.0208 16 1 9.9837 -0.0650 -5.9594 17 1 10.1656 0.8960 -3.7405 18 6 1.6414 2.1162 1.2877 19 6 2.0730 1.6036 2.4972 20 6 1.7136 2.2226 3.6788 21 6 0.9096 3.3529 3.6517 22 8 0.5505 3.9608 4.8129 23 6 1.0365 3.3816 6.0255 24 6 0.4733 3.8620 2.4371 25 6 0.8397 3.2423 1.2581 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6658 33 1 5.9446 1.0785 -1.1785 34 1 5.2730 -0.7811 -3.1956 35 1 5.2139 0.8537 -3.8972 36 1 7.4230 -1.0148 -6.1759 37 1 2.6949 0.7209 2.5179 38 1 2.0546 1.8245 4.6230 39 1 2.1264 3.3845 6.0183 40 1 0.6769 3.9622 6.8751 41 1 0.6765 2.3561 6.1082 42 1 -0.1530 4.7415 2.4134 43 1 0.5006 3.6385 0.3123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427612238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:11 Heat of formation + Delta-G solvation = -74.950645 kcal Electronic energy + Delta-G solvation = -22570.726510 eV Core-core repulsion = 19194.320446 eV Total energy + Delta-G solvation = -3376.406064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44031 -39.19674 -37.90553 -35.10766 -34.03313 -32.33512 -31.21939 -30.64397 -29.56469 -27.65198 -26.94448 -24.40100 -23.11280 -22.34617 -22.07553 -20.11626 -19.39303 -18.35895 -17.20965 -16.40817 -15.97056 -15.84814 -15.19287 -15.04016 -14.87454 -14.58498 -14.32138 -14.19223 -13.81289 -13.49395 -13.28315 -12.85517 -12.81001 -12.61867 -12.20603 -11.97059 -11.89909 -11.61656 -11.34328 -11.28575 -11.13788 -10.97681 -10.89755 -10.68691 -10.45097 -10.39365 -10.27584 -9.38981 -9.11529 -8.93207 -8.72296 -8.17435 -7.84829 -6.16494 -4.23262 1.22764 1.31027 3.05494 3.23986 3.30194 3.32617 3.41700 3.63050 4.12406 4.37610 4.59308 4.71996 4.80552 4.84397 4.88541 5.00465 5.14740 5.19515 5.22175 5.27255 5.33566 5.41989 5.52470 5.57444 5.67888 5.70544 5.88313 5.94892 6.06160 6.11424 6.17162 6.23699 6.26828 6.42191 6.61553 6.65358 6.73615 7.20593 7.32249 7.47311 7.53046 7.67698 7.98009 8.65578 8.79245 9.13864 9.43628 10.93710 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.002769 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.562351 B =10109.548984 C =10773.119963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.027 4.027 4 H 0.086 0.914 5 C -0.135 4.135 6 C 0.497 3.503 7 O -0.553 6.553 8 N -0.715 5.715 9 C 0.249 3.751 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.100 4.100 19 C -0.075 4.075 20 C -0.205 4.205 21 C 0.115 3.885 22 O -0.321 6.321 23 C 0.028 3.972 24 C -0.150 4.150 25 C -0.077 4.077 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 6.837 20.682 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.046 4.046 4 H 0.104 0.896 5 C -0.176 4.176 6 C 0.283 3.717 7 O -0.433 6.433 8 N -0.363 5.363 9 C 0.129 3.871 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.100 4.100 19 C -0.093 4.093 20 C -0.224 4.224 21 C 0.070 3.930 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.168 4.168 25 C -0.095 4.095 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.346 6.651 19.937 24.375 hybrid contribution 1.591 -0.086 0.353 1.632 sum -10.755 6.565 20.290 23.884 Atomic orbital electron populations 1.21714 0.96188 1.01038 1.01362 1.21725 0.95791 0.95330 1.03054 1.19889 0.93800 0.96872 0.94048 0.89574 1.21758 0.96725 1.02589 0.96489 1.20469 0.83381 0.79436 0.88462 1.90623 1.49752 1.50229 1.52695 1.46498 1.05999 1.62868 1.20897 1.19084 0.94979 0.94363 0.78710 1.21238 0.90997 1.43687 1.02212 0.91951 1.24956 0.98865 0.94821 0.95408 1.69974 1.35509 1.40875 1.05949 0.86423 0.84615 0.78481 0.77441 1.20472 1.21003 1.19755 1.19876 0.98923 0.96209 0.95013 1.20822 0.98345 0.98938 0.91213 1.21195 1.03708 0.98087 0.99414 1.19018 0.95402 0.92505 0.86069 1.86050 1.71129 1.53369 1.12950 1.23025 0.99548 0.99263 0.84859 1.20395 1.04379 1.02377 0.89687 1.20937 0.96490 0.94593 0.97467 0.93296 0.92750 0.93259 0.92861 0.89152 0.89391 0.89529 0.77773 0.95597 0.95609 0.92464 0.85742 0.85726 0.92674 0.88427 0.92739 0.85443 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.73 37.16 0.36 -1.42 16 2 C -0.12 -1.66 5.08 -26.73 -0.14 -1.79 16 3 C -0.03 -0.36 1.68 -91.77 -0.15 -0.51 16 4 H 0.09 1.24 7.69 -51.93 -0.40 0.84 16 5 C -0.14 -1.86 4.92 -27.88 -0.14 -2.00 16 6 C 0.50 9.56 7.51 -10.99 -0.08 9.48 16 7 O -0.55 -12.63 13.99 5.56 0.08 -12.55 16 8 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 14 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 C -0.10 -1.15 3.76 -104.60 -0.39 -1.54 16 19 C -0.08 -0.80 8.70 -39.60 -0.34 -1.14 16 20 C -0.21 -2.06 9.04 -39.43 -0.36 -2.41 16 21 C 0.11 1.25 6.69 -39.21 -0.26 0.98 16 22 O -0.32 -3.27 10.50 -19.41 -0.20 -3.47 16 23 C 0.03 0.18 9.81 101.05 0.99 1.17 16 24 C -0.15 -1.60 9.99 -39.43 -0.39 -2.00 16 25 C -0.08 -0.84 9.66 -39.60 -0.38 -1.22 16 26 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.65 7.20 -51.93 -0.37 0.28 16 30 H 0.09 1.52 5.88 -51.93 -0.31 1.22 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 33 H 0.39 6.97 8.32 -40.82 -0.34 6.64 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 1.19 7.12 -52.49 -0.37 0.81 16 38 H 0.12 0.98 6.30 -52.49 -0.33 0.65 16 39 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 40 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 41 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.24 7.94 -52.49 -0.42 0.83 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -32.15 354.46 -7.75 -39.90 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.60 Total: 4.78 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.74 Total: -9.24 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.40 Total: -40.58 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.13 Total: -16.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.15 -7.75 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.047 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds