Wall clock time and date at job start Tue Mar 31 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.53001 * 109.47049 * 185.00237 * 3 2 1 6 6 C 1.50700 * 109.47108 * 65.00259 * 5 3 2 7 7 O 1.21281 * 120.00009 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99696 * 180.02562 * 6 5 3 9 9 C 1.46501 * 119.99696 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00002 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00142 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46897 * 89.99939 * 14 12 10 16 16 H 1.48493 * 109.47074 * 210.00119 * 14 12 10 17 17 H 1.48501 * 109.47022 * 329.99959 * 14 12 10 18 18 C 1.50698 * 109.46933 * 65.00194 * 3 2 1 19 19 C 1.38274 * 119.94472 * 59.72993 * 18 3 2 20 20 C 1.38145 * 120.05499 * 179.72845 * 19 18 3 21 21 C 1.38735 * 119.94439 * 0.54000 * 20 19 18 22 22 O 1.35896 * 120.05711 * 179.75593 * 21 20 19 23 23 C 1.42900 * 116.99725 * 359.97438 * 22 21 20 24 24 C 1.38734 * 119.88636 * 359.72808 * 21 20 19 25 25 C 1.38140 * 119.94848 * 0.02562 * 24 21 20 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 31 31 H 1.08997 * 109.46909 * 185.00358 * 5 3 2 32 32 H 1.09002 * 109.46829 * 305.00193 * 5 3 2 33 33 H 0.97002 * 120.00267 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.47304 * 299.99492 * 9 8 6 35 35 H 1.09002 * 109.47343 * 59.99884 * 9 8 6 36 36 H 0.96996 * 119.99794 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.96705 * 359.97438 * 19 18 3 38 38 H 1.07996 * 120.02790 * 180.27310 * 20 19 18 39 39 H 1.08991 * 109.47391 * 60.00393 * 23 22 21 40 40 H 1.09007 * 109.47003 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.47093 * 300.00167 * 23 22 21 42 42 H 1.07999 * 120.02607 * 179.97438 * 24 21 20 43 43 H 1.08002 * 119.97714 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1258 6 6 3.9589 0.8822 -1.4673 7 8 3.1043 0.5157 -2.2460 8 7 5.2610 0.7857 -1.8014 9 6 5.6441 0.2398 -3.1058 10 6 7.1460 0.2415 -3.2297 11 1 7.7544 0.6125 -2.4181 12 6 7.7435 -0.2307 -4.3791 13 7 7.0027 -0.6830 -5.3671 14 14 9.6052 -0.2280 -4.5329 15 1 10.1460 -1.5127 -4.0208 16 1 9.9837 -0.0650 -5.9594 17 1 10.1656 0.8960 -3.7405 18 6 1.6414 2.1162 1.2877 19 6 2.0730 1.6036 2.4972 20 6 1.7136 2.2226 3.6788 21 6 0.9096 3.3529 3.6517 22 8 0.5505 3.9608 4.8129 23 6 1.0365 3.3816 6.0255 24 6 0.4733 3.8620 2.4371 25 6 0.8397 3.2423 1.2581 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6658 33 1 5.9446 1.0785 -1.1785 34 1 5.2730 -0.7811 -3.1956 35 1 5.2139 0.8537 -3.8972 36 1 7.4230 -1.0148 -6.1759 37 1 2.6949 0.7209 2.5179 38 1 2.0546 1.8245 4.6230 39 1 2.1264 3.3845 6.0183 40 1 0.6769 3.9622 6.8751 41 1 0.6765 2.3561 6.1082 42 1 -0.1530 4.7415 2.4134 43 1 0.5006 3.6385 0.3123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427612238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:11 Heat of formation + Delta-G solvation = -95.183920 kcal Electronic energy + Delta-G solvation = -22571.603891 eV Core-core repulsion = 19194.320446 eV Total energy + Delta-G solvation = -3377.283445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30403 -40.54827 -38.88998 -36.38163 -35.71169 -34.33062 -32.00216 -31.74239 -30.59445 -29.08477 -27.97662 -25.72233 -24.18527 -23.93602 -22.93038 -21.49290 -20.70792 -19.09036 -18.87177 -17.72591 -17.08277 -16.96935 -16.58818 -16.34091 -16.13248 -15.99453 -15.51006 -15.13258 -14.73928 -14.49475 -14.41986 -14.35777 -14.07867 -13.91539 -13.46257 -13.40472 -12.96603 -12.79023 -12.77781 -12.69188 -12.29905 -12.22685 -12.13620 -11.94914 -11.65686 -11.53451 -11.45732 -11.37041 -10.79258 -10.55474 -9.89415 -9.75732 -8.98258 -8.28736 -6.45139 0.44997 0.49225 1.43021 1.45363 1.56590 1.84981 2.33550 2.43789 2.63808 2.86279 3.06060 3.74287 3.79606 3.98707 4.05470 4.12970 4.28704 4.36512 4.38482 4.43167 4.49470 4.56787 4.58405 4.66554 4.75498 4.78852 4.85203 4.98434 5.08098 5.15059 5.17235 5.23656 5.26800 5.33257 5.42443 5.42576 5.50233 5.58223 5.74144 5.80331 5.86675 5.88280 6.50651 6.66672 6.97134 7.24595 7.56543 8.83404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.002769 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.562351 B =10109.548984 C =10773.119963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.020 4.020 4 H 0.067 0.933 5 C -0.121 4.121 6 C 0.494 3.506 7 O -0.593 6.593 8 N -0.712 5.712 9 C 0.267 3.733 10 C -0.555 4.555 11 H 0.083 0.917 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.256 1.256 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.205 4.205 21 C 0.108 3.892 22 O -0.338 6.338 23 C 0.019 3.981 24 C -0.160 4.160 25 C -0.082 4.082 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.407 0.593 34 H -0.013 1.013 35 H -0.015 1.015 36 H 0.268 0.732 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 7.555 23.637 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.039 4.039 4 H 0.085 0.915 5 C -0.160 4.160 6 C 0.282 3.718 7 O -0.475 6.475 8 N -0.362 5.362 9 C 0.144 3.856 10 C -0.593 4.593 11 H 0.101 0.899 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.179 1.179 18 C -0.108 4.108 19 C -0.095 4.095 20 C -0.223 4.223 21 C 0.063 3.937 22 O -0.252 6.252 23 C -0.076 4.076 24 C -0.179 4.179 25 C -0.100 4.100 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.243 0.757 34 H 0.005 0.995 35 H 0.003 0.997 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.068 7.392 22.949 26.529 hybrid contribution 1.080 -0.295 -0.501 1.227 sum -9.987 7.097 22.448 25.574 Atomic orbital electron populations 1.21658 0.95260 1.01448 1.01396 1.21665 0.96687 0.95542 1.01898 1.19750 0.93103 0.96471 0.94615 0.91496 1.21760 0.97415 1.03777 0.93076 1.21493 0.82119 0.78111 0.90078 1.90616 1.50728 1.51613 1.54561 1.46262 1.07423 1.63166 1.19326 1.18502 0.95002 0.91631 0.80500 1.21636 0.91212 1.43513 1.02966 0.89892 1.26072 1.04693 0.94048 0.94877 1.70138 1.38131 1.41966 1.06759 0.85169 0.77448 0.79202 0.77477 1.19566 1.21006 1.17929 1.19656 1.00114 0.96690 0.94301 1.20982 0.98287 0.99267 0.90915 1.21420 1.03121 0.97611 1.00176 1.19215 0.95300 0.92730 0.86431 1.86035 1.71464 1.54003 1.13706 1.23312 1.00249 1.00105 0.83884 1.20557 1.04703 1.02818 0.89812 1.21031 0.96453 0.94564 0.97944 0.92157 0.93739 0.92683 0.91155 0.92959 0.87173 0.86636 0.75728 0.99545 0.99672 0.92291 0.84404 0.83519 0.91801 0.86528 0.91828 0.84653 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.73 71.98 0.70 -2.68 16 2 C -0.12 -3.24 5.08 30.60 0.16 -3.09 16 3 C -0.02 -0.52 1.68 -11.54 -0.02 -0.54 16 4 H 0.07 1.96 7.69 -2.39 -0.02 1.94 16 5 C -0.12 -3.13 4.92 29.85 0.15 -2.98 16 6 C 0.49 19.23 7.51 87.66 0.66 19.89 16 7 O -0.59 -28.42 13.99 -3.03 -0.04 -28.47 16 8 N -0.71 -29.88 5.55 -466.79 -2.59 -32.47 16 9 C 0.27 14.69 5.43 85.63 0.46 15.16 16 10 C -0.56 -30.31 9.28 25.60 0.24 -30.07 16 11 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 12 C 0.00 0.14 5.46 84.65 0.46 0.61 16 13 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 14 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 C -0.11 -2.27 3.76 -19.85 -0.07 -2.34 16 19 C -0.08 -1.40 8.70 22.26 0.19 -1.21 16 20 C -0.20 -3.49 9.04 22.37 0.20 -3.29 16 21 C 0.11 2.11 6.69 22.51 0.15 2.26 16 22 O -0.34 -6.14 10.50 -92.38 -0.97 -7.11 16 23 C 0.02 0.18 9.81 113.37 1.11 1.30 16 24 C -0.16 -3.19 9.99 22.37 0.22 -2.97 16 25 C -0.08 -1.68 9.66 22.25 0.22 -1.47 16 26 H 0.06 1.31 7.38 -2.39 -0.02 1.29 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.62 7.20 -2.39 -0.02 1.60 16 30 H 0.05 1.83 5.88 -2.39 -0.01 1.81 16 31 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.12 2.39 7.58 -2.39 -0.02 2.37 16 33 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 34 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.14 2.12 7.12 -2.91 -0.02 2.10 16 38 H 0.15 1.77 6.30 -2.91 -0.02 1.76 16 39 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 40 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 0.51 7.66 -2.38 -0.02 0.49 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.13 2.51 7.94 -2.91 -0.02 2.48 16 Total: -1.00 -72.45 354.46 3.77 -68.68 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.23 Total: 22.58 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.83 Total: -11.43 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.30 Total: -88.67 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.01 Total: -35.58 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -72.45 3.77 -68.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.504 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds