Wall clock time and date at job start Tue Mar 31 2020 07:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47439 * 2 1 4 4 C 1.53001 * 109.47382 * 120.00188 * 2 1 3 5 5 O 1.42905 * 109.47209 * 64.99515 * 4 2 1 6 6 C 1.35897 * 116.99869 * 180.02562 * 5 4 2 7 7 C 1.38738 * 120.05227 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94391 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.05384 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.94399 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99908 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48505 * 109.46876 * 210.00288 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.38270 * 120.11265 * 0.25255 * 9 8 7 24 24 C 1.38141 * 120.05541 * 359.45293 * 23 9 8 25 25 H 1.08995 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46907 * 300.00253 * 1 2 3 27 27 H 1.08995 * 109.47212 * 59.99900 * 1 2 3 28 28 H 1.09004 * 109.46907 * 239.99747 * 2 1 3 29 29 H 1.08996 * 109.47032 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46800 * 300.00148 * 3 2 1 31 31 H 1.08994 * 109.47328 * 59.99859 * 3 2 1 32 32 H 1.09003 * 109.46760 * 305.00172 * 4 2 1 33 33 H 1.08994 * 109.47396 * 184.99721 * 4 2 1 34 34 H 1.07996 * 120.02821 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.97516 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47152 * 330.00001 * 10 9 8 37 37 H 1.09001 * 109.46980 * 210.00101 * 10 9 8 38 38 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 40 40 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 41 41 H 0.97009 * 119.99937 * 179.97438 * 18 17 15 42 42 H 1.07999 * 119.97019 * 179.70188 * 23 9 8 43 43 H 1.07998 * 120.03323 * 180.24999 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0397 -2.8855 2.2333 7 6 1.7066 -4.2323 2.2427 8 6 2.0913 -5.0303 3.3026 9 6 2.8072 -4.4879 4.3537 10 6 3.2251 -5.3607 5.5090 11 6 4.5795 -5.9568 5.2240 12 8 5.1495 -5.6980 4.1853 13 7 5.1578 -6.7768 6.1239 14 6 6.4746 -7.3558 5.8470 15 6 6.8925 -8.2287 7.0023 16 1 6.2420 -8.3413 7.8570 17 6 8.1053 -8.8837 6.9680 18 7 8.4701 -9.6450 7.9764 19 14 9.2308 -8.6885 5.4900 20 1 10.1409 -7.5358 5.7097 21 1 10.0328 -9.9256 5.3118 22 1 8.4134 -8.4490 4.2735 23 6 3.1354 -3.1447 4.3495 24 6 2.7584 -2.3437 3.2891 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 1.1463 -4.6561 1.4225 35 1 1.8326 -6.0788 3.3102 36 1 2.4967 -6.1606 5.6421 37 1 3.2760 -4.7608 6.4177 38 1 4.7020 -6.9834 6.9548 39 1 6.4240 -7.9558 4.9385 40 1 7.2027 -6.5556 5.7139 41 1 9.3233 -10.1062 7.9521 42 1 3.6905 -2.7224 5.1741 43 1 3.0184 -1.2955 3.2842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427642888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:15 Heat of formation + Delta-G solvation = -73.495809 kcal Electronic energy + Delta-G solvation = -22031.601250 eV Core-core repulsion = 18655.258272 eV Total energy + Delta-G solvation = -3376.342978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31799 -39.08082 -37.68789 -35.56677 -34.25514 -32.42062 -31.91451 -31.02126 -28.48207 -27.56494 -27.22146 -26.00862 -22.84378 -22.36857 -21.21841 -20.47528 -19.77550 -18.27862 -17.24764 -16.54242 -16.07822 -15.90896 -15.76635 -14.94886 -14.78983 -14.58766 -14.37236 -14.09562 -13.96174 -13.43830 -13.32400 -12.97794 -12.89728 -12.63782 -12.49319 -12.38118 -12.26240 -11.63793 -11.52037 -11.47745 -11.45550 -11.18271 -10.97644 -10.82613 -10.76270 -10.70718 -9.96828 -9.49506 -9.21872 -8.94857 -8.77580 -8.12810 -8.04232 -6.21550 -4.23642 1.39558 1.44770 3.02527 3.25234 3.28767 3.33589 3.42638 3.69392 4.22089 4.33914 4.37372 4.43358 4.67554 4.80380 4.83066 4.86606 5.02635 5.07198 5.13645 5.15920 5.24649 5.32565 5.39208 5.44168 5.50724 5.52139 5.58534 5.65419 5.67052 5.73987 5.88419 5.92153 6.06255 6.27872 6.36334 6.68153 6.76828 6.83811 7.08258 7.24544 7.36825 7.40588 8.14596 8.53280 8.75702 8.96886 9.38960 10.90344 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.002478 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.194690 B =11297.334515 C =11718.168513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.316 6.316 6 C 0.123 3.877 7 C -0.151 4.151 8 C -0.066 4.066 9 C -0.092 4.092 10 C -0.101 4.101 11 C 0.499 3.501 12 O -0.550 6.550 13 N -0.708 5.708 14 C 0.220 3.780 15 C -0.543 4.543 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.066 4.066 24 C -0.207 4.207 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.396 0.604 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 19.057 -11.571 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.012 4.012 5 O -0.230 6.230 6 C 0.078 3.922 7 C -0.169 4.169 8 C -0.084 4.084 9 C -0.093 4.093 10 C -0.141 4.141 11 C 0.284 3.716 12 O -0.429 6.429 13 N -0.357 5.357 14 C 0.098 3.902 15 C -0.581 4.581 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.084 4.084 24 C -0.226 4.226 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.620 19.056 -12.411 28.168 hybrid contribution 0.743 0.010 -0.025 0.744 sum -15.877 19.066 -12.437 27.753 Atomic orbital electron populations 1.21815 0.94361 1.02568 1.01631 1.21128 0.96951 0.95793 0.97530 1.21785 1.01325 0.94813 1.02449 1.22880 0.99588 0.79791 0.98958 1.86017 1.74477 1.20692 1.41788 1.18939 0.95224 0.90896 0.87126 1.20326 1.05268 0.90888 1.00464 1.20803 0.96146 0.99216 0.92247 1.19250 0.99789 0.93740 0.96475 1.20660 0.96017 0.99647 0.97816 1.20460 0.87102 0.79682 0.84328 1.90672 1.65165 1.61043 1.26036 1.46197 1.21591 1.47067 1.20825 1.19474 0.79852 0.93361 0.97493 1.21104 1.04842 1.28419 1.03758 0.90235 1.24805 0.97455 0.94253 0.96168 1.69883 1.22320 1.30002 1.30775 0.86814 0.81152 0.77970 0.83747 1.19874 1.20893 1.18505 1.20772 0.96983 0.93058 0.97603 1.21124 1.04940 1.00560 0.95960 0.91806 0.92752 0.92556 0.90066 0.92278 0.91742 0.92334 0.92104 0.92051 0.85440 0.85465 0.88301 0.88385 0.77013 0.95781 0.96269 0.92274 0.85948 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.09 37.16 0.34 -0.67 16 2 C -0.10 -0.69 3.16 -90.62 -0.29 -0.97 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C 0.06 0.56 4.12 37.16 0.15 0.71 16 5 O -0.32 -3.74 9.67 -19.42 -0.19 -3.93 16 6 C 0.12 1.60 6.69 -39.21 -0.26 1.34 16 7 C -0.15 -1.97 9.99 -39.43 -0.39 -2.36 16 8 C -0.07 -0.89 9.69 -39.61 -0.38 -1.27 16 9 C -0.09 -1.29 4.37 -104.60 -0.46 -1.75 16 10 C -0.10 -1.35 5.83 -29.03 -0.17 -1.52 16 11 C 0.50 9.44 7.82 -10.98 -0.09 9.36 16 12 O -0.55 -12.72 16.03 5.56 0.09 -12.63 16 13 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 14 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 15 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 19 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 23 C -0.07 -0.88 9.69 -39.60 -0.38 -1.27 16 24 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 25 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 33 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.10 1.07 8.08 -51.93 -0.42 0.66 16 38 H 0.40 6.90 8.32 -40.82 -0.34 6.56 16 39 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 40 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -33.41 359.80 -8.18 -41.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.86 Total: 2.52 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.41 Total: -9.56 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.43 Total: -40.37 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.10 Total: -16.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.41 -8.18 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427642888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.905 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds