Wall clock time and date at job start Tue Mar 31 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47439 * 2 1 4 4 C 1.53001 * 109.47382 * 120.00188 * 2 1 3 5 5 O 1.42905 * 109.47209 * 64.99515 * 4 2 1 6 6 C 1.35897 * 116.99869 * 180.02562 * 5 4 2 7 7 C 1.38738 * 120.05227 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94391 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.05384 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.94399 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99908 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48505 * 109.46876 * 210.00288 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.38270 * 120.11265 * 0.25255 * 9 8 7 24 24 C 1.38141 * 120.05541 * 359.45293 * 23 9 8 25 25 H 1.08995 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46907 * 300.00253 * 1 2 3 27 27 H 1.08995 * 109.47212 * 59.99900 * 1 2 3 28 28 H 1.09004 * 109.46907 * 239.99747 * 2 1 3 29 29 H 1.08996 * 109.47032 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46800 * 300.00148 * 3 2 1 31 31 H 1.08994 * 109.47328 * 59.99859 * 3 2 1 32 32 H 1.09003 * 109.46760 * 305.00172 * 4 2 1 33 33 H 1.08994 * 109.47396 * 184.99721 * 4 2 1 34 34 H 1.07996 * 120.02821 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.97516 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47152 * 330.00001 * 10 9 8 37 37 H 1.09001 * 109.46980 * 210.00101 * 10 9 8 38 38 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 40 40 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 41 41 H 0.97009 * 119.99937 * 179.97438 * 18 17 15 42 42 H 1.07999 * 119.97019 * 179.70188 * 23 9 8 43 43 H 1.07998 * 120.03323 * 180.24999 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0397 -2.8855 2.2333 7 6 1.7066 -4.2323 2.2427 8 6 2.0913 -5.0303 3.3026 9 6 2.8072 -4.4879 4.3537 10 6 3.2251 -5.3607 5.5090 11 6 4.5795 -5.9568 5.2240 12 8 5.1495 -5.6980 4.1853 13 7 5.1578 -6.7768 6.1239 14 6 6.4746 -7.3558 5.8470 15 6 6.8925 -8.2287 7.0023 16 1 6.2420 -8.3413 7.8570 17 6 8.1053 -8.8837 6.9680 18 7 8.4701 -9.6450 7.9764 19 14 9.2308 -8.6885 5.4900 20 1 10.1409 -7.5358 5.7097 21 1 10.0328 -9.9256 5.3118 22 1 8.4134 -8.4490 4.2735 23 6 3.1354 -3.1447 4.3495 24 6 2.7584 -2.3437 3.2891 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 1.1463 -4.6561 1.4225 35 1 1.8326 -6.0788 3.3102 36 1 2.4967 -6.1606 5.6421 37 1 3.2760 -4.7608 6.4177 38 1 4.7020 -6.9834 6.9548 39 1 6.4240 -7.9558 4.9385 40 1 7.2027 -6.5556 5.7139 41 1 9.3233 -10.1062 7.9521 42 1 3.6905 -2.7224 5.1741 43 1 3.0184 -1.2955 3.2842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427642888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:14 Heat of formation + Delta-G solvation = -94.397313 kcal Electronic energy + Delta-G solvation = -22032.507607 eV Core-core repulsion = 18655.258272 eV Total energy + Delta-G solvation = -3377.249335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28881 -40.46013 -38.69229 -36.27685 -36.05117 -34.40224 -33.07290 -31.97855 -30.19044 -28.26094 -28.06226 -27.02684 -24.19453 -23.73622 -22.44552 -21.34793 -21.06064 -19.22782 -19.07190 -17.65095 -17.37135 -17.17732 -16.92126 -16.31921 -16.16670 -15.75259 -15.38488 -15.19677 -14.97805 -14.73331 -14.47078 -14.29912 -14.14898 -13.97009 -13.57282 -13.29567 -13.10679 -12.98477 -12.83188 -12.62300 -12.44858 -12.16537 -12.03191 -11.94399 -11.92357 -11.65320 -11.55896 -11.49039 -10.92315 -10.80457 -9.92751 -9.89250 -9.03161 -8.40376 -6.46912 0.41883 0.44180 1.31493 1.34030 1.46621 1.79142 2.22577 2.27336 2.47424 2.93962 2.95034 3.73600 3.79186 3.84199 3.92489 3.97190 4.11545 4.20305 4.28933 4.39464 4.44577 4.49959 4.61855 4.65969 4.73345 4.76895 4.80198 4.84066 4.97433 4.99654 5.03453 5.10769 5.18193 5.26557 5.30066 5.36655 5.37159 5.41611 5.55578 5.68171 5.84421 6.09610 6.47489 6.54627 6.89241 7.16257 7.47037 8.74213 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.002478 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.194690 B =11297.334515 C =11718.168513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.056 3.944 5 O -0.326 6.326 6 C 0.115 3.885 7 C -0.165 4.165 8 C -0.075 4.075 9 C -0.113 4.113 10 C -0.087 4.087 11 C 0.500 3.500 12 O -0.594 6.594 13 N -0.708 5.708 14 C 0.232 3.768 15 C -0.546 4.546 16 H 0.061 0.939 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.263 1.263 23 C -0.077 4.077 24 C -0.212 4.212 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.410 0.590 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.272 0.728 42 H 0.135 0.865 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 20.541 -12.164 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.019 4.019 5 O -0.240 6.240 6 C 0.070 3.930 7 C -0.183 4.183 8 C -0.093 4.093 9 C -0.113 4.113 10 C -0.126 4.126 11 C 0.288 3.712 12 O -0.475 6.475 13 N -0.358 5.358 14 C 0.108 3.892 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.187 1.187 23 C -0.095 4.095 24 C -0.231 4.231 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.246 0.754 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.153 0.847 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.385 20.554 -12.985 29.888 hybrid contribution 0.898 -0.400 0.149 0.994 sum -16.487 20.154 -12.837 29.031 Atomic orbital electron populations 1.21801 0.94123 1.01790 1.02492 1.21155 0.97149 0.96587 0.96374 1.21771 1.01402 0.93564 1.03276 1.23129 0.99873 0.78538 1.00311 1.86017 1.74498 1.22021 1.41501 1.19142 0.95127 0.91224 0.87531 1.20564 1.05609 0.91253 1.00893 1.21040 0.96115 0.99944 0.92231 1.19428 1.00624 0.94234 0.97040 1.20653 0.92612 1.00567 0.98803 1.21405 0.88530 0.78335 0.82964 1.90652 1.66749 1.62318 1.27823 1.46058 1.20254 1.47451 1.22008 1.19058 0.82075 0.92453 0.95633 1.21313 1.04590 1.28505 1.03937 0.92046 1.25598 0.99090 0.94068 0.98709 1.69981 1.23173 1.31127 1.32627 0.85872 0.79344 0.78487 0.80261 1.19037 1.19768 1.18721 1.21046 0.96988 0.93171 0.98270 1.21370 1.04572 1.01590 0.95562 0.93370 0.92230 0.91382 0.90836 0.92163 0.90782 0.91656 0.91059 0.91943 0.84413 0.84289 0.85396 0.85425 0.75400 0.97266 0.97353 0.91865 0.84677 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.09 71.98 0.65 -1.15 16 2 C -0.09 -1.23 3.16 -10.79 -0.03 -1.27 16 3 C -0.14 -1.30 9.19 71.98 0.66 -0.64 16 4 C 0.06 0.92 4.12 71.98 0.30 1.22 16 5 O -0.33 -7.48 9.67 -92.39 -0.89 -8.38 16 6 C 0.11 2.90 6.69 22.51 0.15 3.05 16 7 C -0.16 -4.17 9.99 22.37 0.22 -3.94 16 8 C -0.08 -1.93 9.69 22.25 0.22 -1.71 16 9 C -0.11 -2.96 4.37 -19.85 -0.09 -3.05 16 10 C -0.09 -2.10 5.83 29.10 0.17 -1.93 16 11 C 0.50 18.19 7.82 87.66 0.69 18.88 16 12 O -0.59 -27.11 16.03 -3.03 -0.05 -27.16 16 13 N -0.71 -27.76 5.55 -466.78 -2.59 -30.35 16 14 C 0.23 11.44 4.50 85.63 0.38 11.82 16 15 C -0.55 -30.14 9.83 25.60 0.25 -29.89 16 16 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 17 C 0.03 1.46 5.47 84.66 0.46 1.92 16 18 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 19 Si 0.94 44.52 27.47 68.60 1.88 46.40 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 23 C -0.08 -1.92 9.69 22.25 0.22 -1.71 16 24 C -0.21 -5.03 9.04 22.37 0.20 -4.82 16 25 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 1.01 7.66 -2.39 -0.02 1.00 16 33 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.13 2.37 8.08 -2.39 -0.02 2.35 16 37 H 0.13 2.35 8.08 -2.39 -0.02 2.33 16 38 H 0.41 13.73 8.32 -92.71 -0.77 12.96 16 39 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 40 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 41 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.14 2.67 6.30 -2.91 -0.02 2.65 16 Total: -1.00 -71.67 359.80 3.27 -68.39 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.17 Total: 19.62 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.45 Total: -13.22 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.29 Total: -85.66 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.94 Total: -35.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -71.67 3.27 -68.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427642888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.003 kcal (2) G-P(sol) polarization free energy of solvation -71.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds