Wall clock time and date at job start Tue Mar 31 2020 07:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46685 * 2 1 4 4 H 1.09001 * 109.47380 * 54.99984 * 3 2 1 5 5 O 1.42892 * 109.47524 * 294.99500 * 3 2 1 6 6 C 1.53006 * 109.46622 * 174.99527 * 3 2 1 7 7 H 1.08998 * 109.47610 * 300.00291 * 6 3 2 8 8 C 1.53002 * 109.46996 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47061 * 175.00316 * 8 6 3 10 10 N 1.46508 * 109.46863 * 60.00419 * 6 3 2 11 11 C 1.34779 * 119.99377 * 204.99965 * 10 6 3 12 12 O 1.21546 * 120.00492 * 359.97438 * 11 10 6 13 13 C 1.47888 * 119.99588 * 179.97438 * 11 10 6 14 14 C 1.39919 * 120.02408 * 359.72430 * 13 11 10 15 15 C 1.38328 * 120.35816 * 179.71887 * 14 13 11 16 16 C 1.37761 * 120.41018 * 0.55729 * 15 14 13 17 17 C 1.40746 * 120.03874 * 359.72079 * 16 15 14 18 18 C 1.41436 * 120.17756 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00484 * 24.42793 * 18 17 16 20 20 C 1.39942 * 119.99923 * 204.43302 * 18 17 16 21 21 N 1.30832 * 120.00093 * 17.88853 * 20 18 17 22 22 Si 1.86800 * 120.00181 * 197.88800 * 20 18 17 23 23 H 1.48499 * 109.46620 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47210 * 119.99978 * 22 20 18 25 25 H 1.48497 * 109.47242 * 240.00329 * 22 20 18 26 26 C 1.38994 * 120.02543 * 179.97438 * 13 11 10 27 27 H 1.08996 * 109.47292 * 299.99845 * 1 2 3 28 28 H 1.08994 * 109.47113 * 60.00337 * 1 2 3 29 29 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47152 * 239.99387 * 2 1 3 31 31 H 1.09005 * 109.46459 * 119.99797 * 2 1 3 32 32 H 0.96711 * 114.00036 * 300.00908 * 5 3 2 33 33 H 1.09004 * 109.47257 * 55.00051 * 8 6 3 34 34 H 1.09004 * 109.47084 * 295.00121 * 8 6 3 35 35 H 1.09002 * 109.47416 * 60.00528 * 9 8 6 36 36 H 1.09003 * 109.47209 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47339 * 300.00227 * 9 8 6 38 38 H 0.96996 * 120.00017 * 24.99648 * 10 6 3 39 39 H 1.07997 * 119.82117 * 359.97435 * 14 13 11 40 40 H 1.08000 * 119.79663 * 180.25768 * 15 14 13 41 41 H 1.08003 * 119.97958 * 179.74241 * 16 15 14 42 42 H 0.97000 * 120.00157 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.19943 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9570 1.0572 8 6 4.0748 2.8868 0.1252 9 6 5.5842 2.8942 0.3757 10 7 4.1490 0.7198 -1.0057 11 6 5.3660 0.1530 -0.8868 12 8 5.9791 0.2433 0.1589 13 6 5.9555 -0.5788 -2.0287 14 6 5.2478 -0.6879 -3.2308 15 6 5.7951 -1.3659 -4.3052 16 6 7.0378 -1.9511 -4.2007 17 6 7.7621 -1.8567 -2.9976 18 6 9.0385 -2.4559 -2.8873 19 1 9.6302 -2.6334 -3.7731 20 6 9.5347 -2.8190 -1.6302 21 7 8.7190 -2.9374 -0.6142 22 14 11.3618 -3.1346 -1.4027 23 1 12.0633 -2.9347 -2.6962 24 1 11.9055 -2.1900 -0.3942 25 1 11.5690 -4.5294 -0.9370 26 6 7.2108 -1.1631 -1.9070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0142 1.6541 -2.0139 33 1 3.5731 3.4500 0.9122 34 1 3.8646 3.3461 -0.8407 35 1 6.0859 2.3311 -0.4113 36 1 5.9475 3.9219 0.3757 37 1 5.7944 2.4348 1.3416 38 1 3.6599 0.6481 -1.8402 39 1 4.2707 -0.2369 -3.3216 40 1 5.2426 -1.4410 -5.2302 41 1 7.4567 -2.4822 -5.0426 42 1 9.0629 -3.1894 0.2571 43 1 7.7590 -1.0844 -0.9798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456611643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:51 Heat of formation + Delta-G solvation = -90.325669 kcal Electronic energy + Delta-G solvation = -23710.961126 eV Core-core repulsion = 20333.888350 eV Total energy + Delta-G solvation = -3377.072776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96141 -38.12155 -36.93573 -34.51402 -33.79498 -32.85466 -32.14443 -30.00076 -29.44946 -28.05929 -25.34738 -24.18369 -22.86691 -21.34843 -21.04976 -20.43519 -19.71185 -17.92741 -16.95815 -16.21516 -15.80976 -15.18529 -15.08894 -14.87593 -14.84225 -14.44295 -13.90501 -13.36612 -13.22635 -12.97732 -12.84124 -12.56653 -12.52181 -12.36398 -12.03924 -11.69496 -11.56220 -11.26395 -11.18563 -11.11186 -11.08175 -10.88255 -10.75938 -10.60091 -10.47802 -10.03066 -9.94789 -9.71883 -9.24824 -9.01861 -8.61257 -7.66281 -7.55344 -6.83501 -4.44499 2.18191 2.77927 3.06166 3.10718 3.12678 3.57013 3.83983 3.89864 4.18662 4.53215 4.60687 4.80514 4.93230 5.26253 5.27633 5.36579 5.48481 5.55821 5.58140 5.63328 5.72902 5.87930 5.92187 6.03647 6.05117 6.10309 6.15148 6.19648 6.22756 6.41873 6.68535 6.73154 6.83975 6.95888 6.98636 7.18082 7.35135 7.44620 7.66184 7.72126 7.89011 8.04476 8.15746 8.47674 8.77411 8.80329 8.93094 10.11120 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.004182 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.855727 B = 6694.101770 C = 7204.501162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.158 4.158 3 C 0.101 3.899 4 H 0.108 0.892 5 O -0.556 6.556 6 C 0.113 3.887 7 H 0.093 0.907 8 C -0.125 4.125 9 C -0.146 4.146 10 N -0.730 5.730 11 C 0.567 3.433 12 O -0.537 6.537 13 C -0.129 4.129 14 C -0.220 4.220 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.099 3.901 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.783 5.783 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.092 4.092 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.371 0.629 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.392 0.608 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 6.392 1.218 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.042 3.958 4 H 0.126 0.874 5 O -0.361 6.361 6 C 0.008 3.992 7 H 0.111 0.889 8 C -0.164 4.164 9 C -0.204 4.204 10 N -0.386 5.386 11 C 0.357 3.643 12 O -0.415 6.415 13 C -0.132 4.132 14 C -0.240 4.240 15 C -0.115 4.115 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.145 4.145 21 N -0.407 5.407 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.112 4.112 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.218 0.782 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.228 0.772 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.801 6.781 2.662 13.028 hybrid contribution 0.791 -0.713 -0.576 1.211 sum -10.009 6.068 2.086 11.889 Atomic orbital electron populations 1.21699 0.95192 1.01454 1.02088 1.22226 0.96750 0.96949 1.03618 1.22320 0.92226 0.93193 0.88078 0.87422 1.86574 1.76764 1.57159 1.15621 1.21690 0.92493 0.93097 0.91955 0.88908 1.21830 0.96997 0.95544 1.02012 1.21825 0.95153 1.00209 1.03185 1.45924 1.20031 1.56917 1.15682 1.18754 0.79946 0.77270 0.88285 1.90708 1.60884 1.60032 1.29874 1.19486 0.97443 1.03377 0.92876 1.20301 0.99626 1.09767 0.94269 1.20433 0.95879 0.98570 0.96653 1.21101 0.95764 1.07092 0.99300 1.17606 0.92531 0.89540 0.90700 1.19632 1.00826 1.34836 0.93532 0.90039 1.25965 1.00144 0.92984 0.95452 1.69797 1.36562 1.32350 1.01986 0.86245 0.82252 0.78616 0.79584 1.18311 1.19534 1.19894 1.21638 0.93567 0.95611 1.00431 0.92932 0.92171 0.92851 0.91137 0.90844 0.78158 0.91855 0.91555 0.91862 0.94029 0.92372 0.77219 0.89454 0.88942 0.88652 0.90487 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.98 16 2 C -0.16 -1.64 5.38 -26.73 -0.14 -1.78 16 3 C 0.10 1.07 2.79 -26.73 -0.07 0.99 16 4 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 5 O -0.56 -5.89 12.29 -35.23 -0.43 -6.32 16 6 C 0.11 1.49 2.10 -67.92 -0.14 1.35 16 7 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 8 C -0.13 -1.63 5.39 -26.73 -0.14 -1.78 16 9 C -0.15 -2.29 8.51 37.16 0.32 -1.97 16 10 N -0.73 -11.01 4.33 -54.73 -0.24 -11.24 16 11 C 0.57 11.58 6.34 -12.31 -0.08 11.50 16 12 O -0.54 -12.51 13.47 5.32 0.07 -12.44 16 13 C -0.13 -2.92 5.87 -105.04 -0.62 -3.53 16 14 C -0.22 -4.43 9.55 -38.92 -0.37 -4.80 16 15 C -0.10 -2.02 10.01 -39.72 -0.40 -2.41 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 18 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.47 10.96 55.55 0.61 -19.87 16 22 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.41 8.24 -38.44 -0.32 -2.72 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.78 7.61 -51.93 -0.40 0.38 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.37 3.20 7.51 45.56 0.34 3.54 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 35 H 0.06 1.18 5.64 -51.93 -0.29 0.88 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 38 H 0.39 5.05 4.97 -40.82 -0.20 4.85 16 39 H 0.09 1.42 6.38 -52.49 -0.33 1.08 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 42 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 43 H 0.13 3.78 5.74 -52.49 -0.30 3.47 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -28.76 345.59 -8.55 -37.31 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.73 Total: 13.84 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -3.01 Total: -20.04 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.37 Total: -31.11 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.36 Total: -18.76 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.76 -8.55 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456611643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.012 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds