Wall clock time and date at job start Tue Mar 31 2020 07:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46685 * 2 1 4 4 H 1.09001 * 109.47380 * 54.99984 * 3 2 1 5 5 O 1.42892 * 109.47524 * 294.99500 * 3 2 1 6 6 C 1.53006 * 109.46622 * 174.99527 * 3 2 1 7 7 H 1.08998 * 109.47610 * 300.00291 * 6 3 2 8 8 C 1.53002 * 109.46996 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47061 * 175.00316 * 8 6 3 10 10 N 1.46508 * 109.46863 * 60.00419 * 6 3 2 11 11 C 1.34779 * 119.99377 * 204.99965 * 10 6 3 12 12 O 1.21546 * 120.00492 * 359.97438 * 11 10 6 13 13 C 1.47888 * 119.99588 * 179.97438 * 11 10 6 14 14 C 1.39919 * 120.02408 * 359.72430 * 13 11 10 15 15 C 1.38328 * 120.35816 * 179.71887 * 14 13 11 16 16 C 1.37761 * 120.41018 * 0.55729 * 15 14 13 17 17 C 1.40746 * 120.03874 * 359.72079 * 16 15 14 18 18 C 1.41436 * 120.17756 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00484 * 24.42793 * 18 17 16 20 20 C 1.39942 * 119.99923 * 204.43302 * 18 17 16 21 21 N 1.30832 * 120.00093 * 17.88853 * 20 18 17 22 22 Si 1.86800 * 120.00181 * 197.88800 * 20 18 17 23 23 H 1.48499 * 109.46620 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47210 * 119.99978 * 22 20 18 25 25 H 1.48497 * 109.47242 * 240.00329 * 22 20 18 26 26 C 1.38994 * 120.02543 * 179.97438 * 13 11 10 27 27 H 1.08996 * 109.47292 * 299.99845 * 1 2 3 28 28 H 1.08994 * 109.47113 * 60.00337 * 1 2 3 29 29 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47152 * 239.99387 * 2 1 3 31 31 H 1.09005 * 109.46459 * 119.99797 * 2 1 3 32 32 H 0.96711 * 114.00036 * 300.00908 * 5 3 2 33 33 H 1.09004 * 109.47257 * 55.00051 * 8 6 3 34 34 H 1.09004 * 109.47084 * 295.00121 * 8 6 3 35 35 H 1.09002 * 109.47416 * 60.00528 * 9 8 6 36 36 H 1.09003 * 109.47209 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47339 * 300.00227 * 9 8 6 38 38 H 0.96996 * 120.00017 * 24.99648 * 10 6 3 39 39 H 1.07997 * 119.82117 * 359.97435 * 14 13 11 40 40 H 1.08000 * 119.79663 * 180.25768 * 15 14 13 41 41 H 1.08003 * 119.97958 * 179.74241 * 16 15 14 42 42 H 0.97000 * 120.00157 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.19943 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9570 1.0572 8 6 4.0748 2.8868 0.1252 9 6 5.5842 2.8942 0.3757 10 7 4.1490 0.7198 -1.0057 11 6 5.3660 0.1530 -0.8868 12 8 5.9791 0.2433 0.1589 13 6 5.9555 -0.5788 -2.0287 14 6 5.2478 -0.6879 -3.2308 15 6 5.7951 -1.3659 -4.3052 16 6 7.0378 -1.9511 -4.2007 17 6 7.7621 -1.8567 -2.9976 18 6 9.0385 -2.4559 -2.8873 19 1 9.6302 -2.6334 -3.7731 20 6 9.5347 -2.8190 -1.6302 21 7 8.7190 -2.9374 -0.6142 22 14 11.3618 -3.1346 -1.4027 23 1 12.0633 -2.9347 -2.6962 24 1 11.9055 -2.1900 -0.3942 25 1 11.5690 -4.5294 -0.9370 26 6 7.2108 -1.1631 -1.9070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0142 1.6541 -2.0139 33 1 3.5731 3.4500 0.9122 34 1 3.8646 3.3461 -0.8407 35 1 6.0859 2.3311 -0.4113 36 1 5.9475 3.9219 0.3757 37 1 5.7944 2.4348 1.3416 38 1 3.6599 0.6481 -1.8402 39 1 4.2707 -0.2369 -3.3216 40 1 5.2426 -1.4410 -5.2302 41 1 7.4567 -2.4822 -5.0426 42 1 9.0629 -3.1894 0.2571 43 1 7.7590 -1.0844 -0.9798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456611643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:50 Heat of formation + Delta-G solvation = -108.609037 kcal Electronic energy + Delta-G solvation = -23711.753952 eV Core-core repulsion = 20333.888350 eV Total energy + Delta-G solvation = -3377.865602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34448 -39.46536 -38.53143 -35.75625 -35.58845 -33.66095 -33.56693 -31.70410 -31.23368 -29.15688 -27.19083 -25.22865 -24.41322 -22.81767 -22.23862 -21.72569 -21.24498 -19.60643 -18.26439 -17.65245 -17.15919 -16.64708 -16.36536 -16.35214 -16.09019 -15.70160 -15.41985 -14.98242 -14.56486 -14.29497 -14.24963 -14.21014 -13.67203 -13.45199 -13.26086 -13.04313 -12.93822 -12.79909 -12.59143 -12.50742 -12.40168 -12.18890 -11.91720 -11.86532 -11.84086 -11.63774 -11.49414 -11.08361 -10.90782 -10.67685 -9.97812 -9.46014 -9.37477 -8.67608 -6.38607 0.41223 1.00852 1.35477 1.45790 1.51398 2.14123 2.19107 2.22794 2.79393 3.33763 3.59622 3.70820 3.89179 4.04511 4.10515 4.22141 4.25912 4.41970 4.43197 4.58972 4.63381 4.68729 4.78004 4.83812 4.91644 4.97502 5.01641 5.08740 5.14704 5.18557 5.21119 5.26582 5.32053 5.41798 5.45192 5.52194 5.58738 5.87117 5.93374 6.05880 6.29547 6.51192 6.67890 6.73074 6.88082 6.94928 7.38479 8.29166 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.004182 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.855727 B = 6694.101770 C = 7204.501162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.158 4.158 3 C 0.117 3.883 4 H 0.125 0.875 5 O -0.558 6.558 6 C 0.112 3.888 7 H 0.073 0.927 8 C -0.119 4.119 9 C -0.143 4.143 10 N -0.706 5.706 11 C 0.565 3.435 12 O -0.575 6.575 13 C -0.138 4.138 14 C -0.197 4.197 15 C -0.096 4.096 16 C -0.220 4.220 17 C 0.067 3.933 18 C -0.499 4.499 19 H 0.082 0.918 20 C 0.031 3.969 21 N -0.825 5.825 22 Si 0.980 3.020 23 H -0.252 1.252 24 H -0.271 1.271 25 H -0.264 1.264 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.381 0.619 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.406 0.594 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.286 0.714 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 7.566 -0.064 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.057 3.943 4 H 0.142 0.858 5 O -0.364 6.364 6 C 0.007 3.993 7 H 0.091 0.909 8 C -0.157 4.157 9 C -0.201 4.201 10 N -0.360 5.360 11 C 0.355 3.645 12 O -0.455 6.455 13 C -0.142 4.142 14 C -0.217 4.217 15 C -0.114 4.114 16 C -0.240 4.240 17 C 0.065 3.935 18 C -0.528 4.528 19 H 0.100 0.900 20 C -0.184 4.184 21 N -0.450 5.450 22 Si 0.801 3.199 23 H -0.175 1.175 24 H -0.196 1.196 25 H -0.188 1.188 26 C -0.152 4.152 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.244 0.756 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.373 7.968 1.338 15.624 hybrid contribution 1.375 -0.981 -0.260 1.709 sum -11.998 6.987 1.078 13.926 Atomic orbital electron populations 1.21662 0.93920 1.01817 1.02594 1.22218 0.97815 0.96621 1.02895 1.22209 0.89578 0.93601 0.88902 0.85761 1.86580 1.76670 1.57304 1.15877 1.21875 0.94500 0.92706 0.90213 0.90878 1.21803 0.94944 0.95553 1.03384 1.21760 0.97186 1.00287 1.00838 1.45658 1.18066 1.55340 1.16938 1.18539 0.81269 0.77535 0.87169 1.90694 1.62287 1.61475 1.31045 1.19836 0.96679 1.02819 0.94830 1.20851 1.00852 1.07486 0.92522 1.20926 0.94925 0.97019 0.98514 1.21405 0.96857 1.07162 0.98542 1.17943 0.93384 0.90260 0.91936 1.19888 1.01880 1.36791 0.94262 0.89989 1.26816 1.04504 0.92266 0.94775 1.69893 1.38539 1.34123 1.02495 0.85186 0.76487 0.78698 0.79554 1.17495 1.19576 1.18818 1.21437 0.95514 0.98574 0.99674 0.92155 0.91905 0.92638 0.91729 0.91816 0.77051 0.89322 0.90642 0.95298 0.92446 0.94237 0.75564 0.84451 0.84432 0.87613 0.90359 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.81 71.98 0.71 -1.48 16 2 C -0.16 -2.87 5.38 30.59 0.16 -2.71 16 3 C 0.12 2.08 2.79 30.59 0.09 2.17 16 4 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 5 O -0.56 -9.49 12.29 -148.98 -1.83 -11.33 16 6 C 0.11 2.74 2.10 44.99 0.09 2.84 16 7 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 8 C -0.12 -2.83 5.39 30.60 0.16 -2.66 16 9 C -0.14 -4.47 8.51 71.98 0.61 -3.86 16 10 N -0.71 -20.08 4.33 -445.34 -1.93 -22.00 16 11 C 0.57 23.33 6.34 86.80 0.55 23.88 16 12 O -0.57 -28.10 13.47 -3.86 -0.05 -28.15 16 13 C -0.14 -6.32 5.87 -20.13 -0.12 -6.44 16 14 C -0.20 -7.40 9.55 22.70 0.22 -7.19 16 15 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 16 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 17 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 18 C -0.50 -27.25 9.05 23.47 0.21 -27.04 16 19 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 20 C 0.03 1.64 5.14 85.25 0.44 2.08 16 21 N -0.82 -46.01 10.96 21.83 0.24 -45.77 16 22 Si 0.98 39.79 29.60 68.60 2.03 41.82 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 C -0.13 -7.21 8.24 23.01 0.19 -7.02 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.24 7.61 -2.39 -0.02 1.23 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.38 4.83 7.51 -74.05 -0.56 4.27 16 33 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.70 7.83 -2.38 -0.02 1.69 16 35 H 0.03 1.08 5.64 -2.39 -0.01 1.07 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.35 7.84 -2.39 -0.02 1.33 16 38 H 0.41 9.05 4.97 -92.71 -0.46 8.59 16 39 H 0.14 3.71 6.38 -2.91 -0.02 3.70 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 43 H 0.10 6.02 5.74 -2.91 -0.02 6.00 16 Total: -1.00 -67.84 345.59 2.11 -65.73 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.01 Total: 37.07 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 3.64 Total: -37.37 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.69 Total: -67.77 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.88 Total: -39.47 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -67.84 2.11 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456611643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.881 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds