Wall clock time and date at job start Tue Mar 31 2020 07:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.09009 * 109.46834 * 55.00137 * 3 2 1 5 5 O 1.42896 * 109.47049 * 295.00382 * 3 2 1 6 6 C 1.52995 * 109.47211 * 174.99842 * 3 2 1 7 7 H 1.09003 * 109.47580 * 300.00659 * 6 3 2 8 8 C 1.53002 * 109.47105 * 180.02562 * 6 3 2 9 9 C 1.53001 * 109.46910 * 175.00113 * 8 6 3 10 10 N 1.46504 * 109.46879 * 60.00154 * 6 3 2 11 11 C 1.34779 * 119.99995 * 204.99375 * 10 6 3 12 12 O 1.21588 * 119.99783 * 0.02562 * 11 10 6 13 13 C 1.47637 * 120.00169 * 180.02562 * 11 10 6 14 14 C 1.40018 * 119.89088 * 359.73303 * 13 11 10 15 15 C 1.36320 * 120.10251 * 179.71285 * 14 13 11 16 16 C 1.40892 * 119.89168 * 0.58370 * 15 14 13 17 17 C 1.41105 * 120.10078 * 179.67403 * 16 15 14 18 18 H 1.08000 * 119.99803 * 204.64987 * 17 16 15 19 19 C 1.40227 * 120.00433 * 24.65026 * 17 16 15 20 20 N 1.30645 * 120.00138 * 17.85896 * 19 17 16 21 21 Si 1.86798 * 120.00013 * 197.86749 * 19 17 16 22 22 H 1.48503 * 109.47683 * 59.99491 * 21 19 17 23 23 H 1.48502 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47034 * 299.99603 * 21 19 17 25 25 C 1.40881 * 119.79157 * 359.69063 * 16 15 14 26 26 C 1.36318 * 119.89512 * 0.02562 * 25 16 15 27 27 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47152 * 299.99663 * 1 2 3 29 29 H 1.09000 * 109.47343 * 59.99910 * 1 2 3 30 30 H 1.09007 * 109.47066 * 240.00285 * 2 1 3 31 31 H 1.08996 * 109.47000 * 120.00755 * 2 1 3 32 32 H 0.96695 * 114.00174 * 299.99288 * 5 3 2 33 33 H 1.09001 * 109.46944 * 295.00323 * 8 6 3 34 34 H 1.09003 * 109.47025 * 55.00086 * 8 6 3 35 35 H 1.09003 * 109.47298 * 60.00140 * 9 8 6 36 36 H 1.09002 * 109.46715 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47488 * 299.99877 * 9 8 6 38 38 H 0.96997 * 120.00091 * 25.00390 * 10 6 3 39 39 H 1.07998 * 119.95050 * 0.02562 * 14 13 11 40 40 H 1.08005 * 120.05567 * 180.24786 * 15 14 13 41 41 H 0.97000 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.05510 * 179.97438 * 25 16 15 43 43 H 1.07998 * 119.94733 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9569 1.0571 8 6 4.0747 2.8868 0.1264 9 6 5.5841 2.8940 0.3769 10 7 4.1489 0.7198 -1.0057 11 6 5.3660 0.1531 -0.8871 12 8 5.9789 0.2427 0.1592 13 6 5.9549 -0.5765 -2.0275 14 6 5.2447 -0.6831 -3.2294 15 6 5.7869 -1.3508 -4.2870 16 6 7.0587 -1.9446 -4.1652 17 6 7.6211 -2.6427 -5.2549 18 1 8.3609 -3.4100 -5.0807 19 6 7.2196 -2.3401 -6.5639 20 7 6.6107 -1.2121 -6.8162 21 14 7.5552 -3.5500 -7.9470 22 1 6.8782 -4.8385 -7.6529 23 1 7.0355 -2.9985 -9.2241 24 1 9.0185 -3.7751 -8.0636 25 6 7.7669 -1.8396 -2.9519 26 6 7.2191 -1.1649 -1.9016 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0141 1.6543 -2.0138 33 1 3.8644 3.3470 -0.8391 34 1 3.5730 3.4492 0.9139 35 1 6.0858 2.3317 -0.4106 36 1 5.9474 3.9217 0.3769 37 1 5.7944 2.4339 1.3424 38 1 3.6598 0.6481 -1.8403 39 1 4.2680 -0.2314 -3.3204 40 1 5.2400 -1.4292 -5.2151 41 1 6.3333 -1.0027 -7.7218 42 1 8.7420 -2.2935 -2.8537 43 1 7.7611 -1.0842 -0.9710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456698775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:01 Heat of formation + Delta-G solvation = -94.410506 kcal Electronic energy + Delta-G solvation = -23477.502087 eV Core-core repulsion = 20100.252179 eV Total energy + Delta-G solvation = -3377.249907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87435 -38.09305 -37.00217 -34.47255 -33.89936 -32.83341 -32.12056 -30.04907 -29.47842 -28.10390 -25.87145 -24.08901 -22.34339 -21.32433 -21.07270 -20.45947 -19.73023 -17.57651 -17.34941 -16.52136 -15.82544 -15.43258 -15.07065 -14.80412 -14.75666 -14.05167 -13.97940 -13.34378 -13.22635 -12.97343 -12.78779 -12.58582 -12.39767 -12.14047 -12.07355 -11.88662 -11.57890 -11.38688 -11.28708 -11.21887 -11.06688 -11.02511 -10.83011 -10.68320 -10.51665 -10.08436 -9.90938 -9.58930 -9.37535 -8.96591 -8.54703 -7.75839 -7.57609 -7.06575 -4.63472 2.20754 2.90377 2.92403 2.96308 3.00166 3.67598 3.71361 3.84579 4.22059 4.53166 4.57501 4.83088 4.94784 5.28690 5.30217 5.38867 5.50361 5.54443 5.64859 5.66040 5.80651 5.88534 5.98020 6.02626 6.09108 6.13558 6.16893 6.21201 6.28427 6.45841 6.72921 6.75407 6.79669 6.90476 7.02477 7.10136 7.39822 7.49092 7.61283 7.75095 7.82434 8.03940 8.18175 8.36391 8.59947 8.71978 9.05863 9.85383 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.003843 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.860543 B = 7284.060697 C = 7996.900544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.101 3.899 4 H 0.107 0.893 5 O -0.556 6.556 6 C 0.115 3.885 7 H 0.091 0.909 8 C -0.126 4.126 9 C -0.145 4.145 10 N -0.735 5.735 11 C 0.575 3.425 12 O -0.567 6.567 13 C -0.286 4.286 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.443 4.443 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.771 5.771 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.372 0.628 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.390 0.610 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 3.305 5.790 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.041 3.959 4 H 0.125 0.875 5 O -0.362 6.362 6 C 0.010 3.990 7 H 0.109 0.891 8 C -0.165 4.165 9 C -0.202 4.202 10 N -0.389 5.389 11 C 0.370 3.630 12 O -0.449 6.449 13 C -0.290 4.290 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.126 3.874 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.394 5.394 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.259 4.259 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.226 0.774 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.064 3.928 6.752 11.966 hybrid contribution 0.214 -0.838 -1.490 1.722 sum -8.851 3.090 5.262 10.751 Atomic orbital electron populations 1.21703 0.95228 1.01423 1.02112 1.22218 0.96715 0.97011 1.03508 1.22321 0.92364 0.93122 0.88086 0.87546 1.86568 1.76758 1.57194 1.15641 1.21626 0.92370 0.93034 0.91993 0.89119 1.21832 0.96978 0.95692 1.01960 1.21808 0.95241 1.00060 1.03076 1.45884 1.20256 1.57314 1.15494 1.18489 0.79588 0.76950 0.87997 1.90645 1.61418 1.62288 1.30532 1.18905 0.99816 1.15677 0.94625 1.20440 0.96868 0.97906 0.93013 1.20974 0.96405 1.04176 0.98163 1.17774 0.90336 0.87733 0.91603 1.19830 1.19897 1.17038 0.90311 0.89750 1.26092 0.92755 0.94990 1.00800 1.69731 1.26896 1.19561 1.23249 0.86265 0.80159 0.81118 0.78765 1.18466 1.20020 1.18643 1.20715 1.00378 1.09239 0.95542 1.20354 0.93122 0.93659 0.96951 0.92881 0.92961 0.92129 0.91135 0.90958 0.78065 0.91578 0.92004 0.91736 0.94186 0.92530 0.77424 0.89566 0.86233 0.90145 0.88447 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.01 16 2 C -0.16 -1.63 5.38 -26.73 -0.14 -1.78 16 3 C 0.10 1.08 2.79 -26.73 -0.07 1.01 16 4 H 0.11 1.05 8.14 -51.92 -0.42 0.62 16 5 O -0.56 -6.22 12.29 -35.23 -0.43 -6.66 16 6 C 0.12 1.52 2.09 -67.93 -0.14 1.38 16 7 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 8 C -0.13 -1.67 5.39 -26.73 -0.14 -1.82 16 9 C -0.14 -2.25 8.51 37.16 0.32 -1.93 16 10 N -0.74 -11.18 4.33 -54.81 -0.24 -11.42 16 11 C 0.57 11.36 6.33 -12.42 -0.08 11.28 16 12 O -0.57 -12.44 13.46 5.29 0.07 -12.37 16 13 C -0.29 -6.25 5.89 -104.73 -0.62 -6.87 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 15 C -0.18 -4.24 8.64 -39.27 -0.34 -4.58 16 16 C 0.13 3.22 5.58 -106.81 -0.60 2.62 16 17 C -0.44 -10.87 9.04 -37.75 -0.34 -11.21 16 18 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 19 C 0.08 1.72 5.14 -17.31 -0.09 1.63 16 20 N -0.77 -18.17 10.95 55.56 0.61 -17.56 16 21 Si 0.91 17.02 29.60 -169.99 -5.03 11.98 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 25 C -0.24 -5.69 9.73 -39.27 -0.38 -6.08 16 26 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.07 0.79 7.61 -51.92 -0.40 0.39 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.37 3.52 7.51 45.56 0.34 3.86 16 33 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.20 5.65 -51.93 -0.29 0.90 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 38 H 0.39 5.27 4.96 -40.82 -0.20 5.07 16 39 H 0.09 1.52 6.37 -52.49 -0.33 1.18 16 40 H 0.12 2.89 6.16 -52.48 -0.32 2.57 16 41 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 42 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -27.17 345.33 -8.56 -35.74 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -5.73 Total: 15.01 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.02 Total: -19.93 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.37 Total: -28.98 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.36 Total: -19.03 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.17 -8.56 -35.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.674 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds