Wall clock time and date at job start Tue Mar 31 2020 07:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.09009 * 109.46834 * 55.00137 * 3 2 1 5 5 O 1.42896 * 109.47049 * 295.00382 * 3 2 1 6 6 C 1.52995 * 109.47211 * 174.99842 * 3 2 1 7 7 H 1.09003 * 109.47580 * 300.00659 * 6 3 2 8 8 C 1.53002 * 109.47105 * 180.02562 * 6 3 2 9 9 C 1.53001 * 109.46910 * 175.00113 * 8 6 3 10 10 N 1.46504 * 109.46879 * 60.00154 * 6 3 2 11 11 C 1.34779 * 119.99995 * 204.99375 * 10 6 3 12 12 O 1.21588 * 119.99783 * 0.02562 * 11 10 6 13 13 C 1.47637 * 120.00169 * 180.02562 * 11 10 6 14 14 C 1.40018 * 119.89088 * 359.73303 * 13 11 10 15 15 C 1.36320 * 120.10251 * 179.71285 * 14 13 11 16 16 C 1.40892 * 119.89168 * 0.58370 * 15 14 13 17 17 C 1.41105 * 120.10078 * 179.67403 * 16 15 14 18 18 H 1.08000 * 119.99803 * 204.64987 * 17 16 15 19 19 C 1.40227 * 120.00433 * 24.65026 * 17 16 15 20 20 N 1.30645 * 120.00138 * 17.85896 * 19 17 16 21 21 Si 1.86798 * 120.00013 * 197.86749 * 19 17 16 22 22 H 1.48503 * 109.47683 * 59.99491 * 21 19 17 23 23 H 1.48502 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47034 * 299.99603 * 21 19 17 25 25 C 1.40881 * 119.79157 * 359.69063 * 16 15 14 26 26 C 1.36318 * 119.89512 * 0.02562 * 25 16 15 27 27 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47152 * 299.99663 * 1 2 3 29 29 H 1.09000 * 109.47343 * 59.99910 * 1 2 3 30 30 H 1.09007 * 109.47066 * 240.00285 * 2 1 3 31 31 H 1.08996 * 109.47000 * 120.00755 * 2 1 3 32 32 H 0.96695 * 114.00174 * 299.99288 * 5 3 2 33 33 H 1.09001 * 109.46944 * 295.00323 * 8 6 3 34 34 H 1.09003 * 109.47025 * 55.00086 * 8 6 3 35 35 H 1.09003 * 109.47298 * 60.00140 * 9 8 6 36 36 H 1.09002 * 109.46715 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47488 * 299.99877 * 9 8 6 38 38 H 0.96997 * 120.00091 * 25.00390 * 10 6 3 39 39 H 1.07998 * 119.95050 * 0.02562 * 14 13 11 40 40 H 1.08005 * 120.05567 * 180.24786 * 15 14 13 41 41 H 0.97000 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.05510 * 179.97438 * 25 16 15 43 43 H 1.07998 * 119.94733 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9569 1.0571 8 6 4.0747 2.8868 0.1264 9 6 5.5841 2.8940 0.3769 10 7 4.1489 0.7198 -1.0057 11 6 5.3660 0.1531 -0.8871 12 8 5.9789 0.2427 0.1592 13 6 5.9549 -0.5765 -2.0275 14 6 5.2447 -0.6831 -3.2294 15 6 5.7869 -1.3508 -4.2870 16 6 7.0587 -1.9446 -4.1652 17 6 7.6211 -2.6427 -5.2549 18 1 8.3609 -3.4100 -5.0807 19 6 7.2196 -2.3401 -6.5639 20 7 6.6107 -1.2121 -6.8162 21 14 7.5552 -3.5500 -7.9470 22 1 6.8782 -4.8385 -7.6529 23 1 7.0355 -2.9985 -9.2241 24 1 9.0185 -3.7751 -8.0636 25 6 7.7669 -1.8396 -2.9519 26 6 7.2191 -1.1649 -1.9016 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0141 1.6543 -2.0138 33 1 3.8644 3.3470 -0.8391 34 1 3.5730 3.4492 0.9139 35 1 6.0858 2.3317 -0.4106 36 1 5.9474 3.9217 0.3769 37 1 5.7944 2.4339 1.3424 38 1 3.6598 0.6481 -1.8403 39 1 4.2680 -0.2314 -3.3204 40 1 5.2400 -1.4292 -5.2151 41 1 6.3333 -1.0027 -7.7218 42 1 8.7420 -2.2935 -2.8537 43 1 7.7611 -1.0842 -0.9710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456698775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:00 Heat of formation + Delta-G solvation = -110.272054 kcal Electronic energy + Delta-G solvation = -23478.189895 eV Core-core repulsion = 20100.252179 eV Total energy + Delta-G solvation = -3377.937716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23324 -39.48983 -38.54437 -35.73908 -35.59704 -33.65713 -33.51518 -31.72554 -31.28139 -29.22746 -27.55727 -25.10331 -23.93768 -22.81877 -22.22877 -21.82768 -21.18439 -19.35798 -18.73946 -17.74446 -17.24166 -16.74715 -16.25719 -16.06115 -15.86864 -15.69944 -15.42970 -14.96089 -14.53630 -14.23736 -14.21140 -13.92536 -13.74169 -13.54647 -13.26394 -13.16140 -12.99818 -12.84883 -12.66249 -12.53047 -12.35889 -12.33284 -11.89010 -11.83085 -11.77949 -11.62618 -11.35672 -11.10614 -10.87599 -10.59511 -9.89781 -9.56133 -9.39036 -8.78734 -6.47651 0.47599 1.15779 1.39055 1.44740 1.51919 2.14862 2.19980 2.36581 2.81213 3.34783 3.62975 3.70487 3.91448 4.09891 4.23225 4.26048 4.30450 4.31759 4.45372 4.46461 4.65882 4.69378 4.81012 4.86245 4.92828 4.99417 5.03386 5.04499 5.13936 5.17333 5.22734 5.27885 5.32191 5.41526 5.48447 5.58730 5.67082 5.83882 5.95543 6.00029 6.24222 6.54757 6.67198 6.73720 6.78216 6.90184 7.51834 8.16292 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.003843 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.860543 B = 7284.060697 C = 7996.900544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.113 3.887 4 H 0.125 0.875 5 O -0.561 6.561 6 C 0.115 3.885 7 H 0.078 0.922 8 C -0.121 4.121 9 C -0.141 4.141 10 N -0.717 5.717 11 C 0.577 3.423 12 O -0.591 6.591 13 C -0.292 4.292 14 C -0.053 4.053 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.478 4.478 18 H 0.083 0.917 19 C 0.040 3.960 20 N -0.798 5.798 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.260 1.260 25 C -0.255 4.255 26 C -0.034 4.034 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.379 0.621 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.297 0.703 42 H 0.100 0.900 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 3.946 5.523 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.194 4.194 3 C 0.054 3.946 4 H 0.142 0.858 5 O -0.367 6.367 6 C 0.010 3.990 7 H 0.096 0.904 8 C -0.160 4.160 9 C -0.198 4.198 10 N -0.370 5.370 11 C 0.370 3.630 12 O -0.474 6.474 13 C -0.296 4.296 14 C -0.072 4.072 15 C -0.217 4.217 16 C 0.098 3.902 17 C -0.505 4.505 18 H 0.101 0.899 19 C -0.179 4.179 20 N -0.421 5.421 21 Si 0.805 3.195 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.184 1.184 25 C -0.274 4.274 26 C -0.053 4.053 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.010 4.591 6.486 13.578 hybrid contribution 0.786 -0.949 -1.299 1.791 sum -10.224 3.643 5.187 12.029 Atomic orbital electron populations 1.21669 0.94126 1.01809 1.02478 1.22202 0.97639 0.96594 1.02935 1.22263 0.90074 0.93625 0.88681 0.85789 1.86569 1.76731 1.57449 1.16001 1.21801 0.94151 0.92585 0.90429 0.90367 1.21814 0.95378 0.95812 1.02964 1.21740 0.96832 1.00179 1.01083 1.45685 1.18662 1.56009 1.16657 1.18197 0.80750 0.77100 0.86912 1.90636 1.62440 1.63213 1.31153 1.19239 0.99514 1.15156 0.95711 1.20721 0.98112 0.96605 0.91800 1.21016 0.96355 1.05557 0.98781 1.18118 0.91229 0.88598 0.92232 1.20085 1.21077 1.17843 0.91487 0.89866 1.26878 0.92102 0.96398 1.02518 1.69750 1.27205 1.20752 1.24443 0.85189 0.79955 0.78533 0.75786 1.18244 1.18721 1.18413 1.20842 1.00789 1.09990 0.95818 1.20500 0.94007 0.93973 0.96816 0.92562 0.92019 0.92305 0.92006 0.91306 0.77221 0.91385 0.89457 0.95111 0.92766 0.93688 0.76217 0.85781 0.86870 0.89183 0.88142 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.81 71.98 0.71 -1.59 16 2 C -0.16 -2.88 5.38 30.59 0.16 -2.71 16 3 C 0.11 2.10 2.79 30.59 0.09 2.18 16 4 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 5 O -0.56 -10.75 12.29 -148.98 -1.83 -12.58 16 6 C 0.12 2.81 2.09 44.99 0.09 2.90 16 7 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 8 C -0.12 -2.93 5.39 30.60 0.17 -2.77 16 9 C -0.14 -4.25 8.51 71.98 0.61 -3.64 16 10 N -0.72 -20.67 4.33 -445.58 -1.93 -22.60 16 11 C 0.58 22.56 6.33 86.72 0.55 23.11 16 12 O -0.59 -26.03 13.46 -3.99 -0.05 -26.09 16 13 C -0.29 -12.80 5.89 -19.94 -0.12 -12.92 16 14 C -0.05 -2.25 9.47 22.25 0.21 -2.03 16 15 C -0.20 -9.55 8.64 22.47 0.19 -9.36 16 16 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 17 C -0.48 -24.05 9.04 23.46 0.21 -23.83 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 19 C 0.04 1.85 5.14 85.35 0.44 2.29 16 20 N -0.80 -37.73 10.95 21.87 0.24 -37.49 16 21 Si 0.99 34.53 29.60 68.60 2.03 36.56 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 23 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 C -0.25 -12.58 9.73 22.47 0.22 -12.37 16 26 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 30 H 0.06 1.25 7.61 -2.38 -0.02 1.23 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.38 6.00 7.51 -74.06 -0.56 5.44 16 33 H 0.07 1.65 7.84 -2.39 -0.02 1.63 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.03 1.12 5.65 -2.39 -0.01 1.11 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 38 H 0.40 9.90 4.96 -92.71 -0.46 9.44 16 39 H 0.12 4.12 6.37 -2.91 -0.02 4.10 16 40 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 41 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 42 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.10 4.66 7.63 -2.91 -0.02 4.64 16 Total: -1.00 -59.52 345.33 2.09 -57.43 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: 0.01 Total: 41.79 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.63 Total: -37.01 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.69 Total: -60.10 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.89 Total: -38.67 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Total: -59.52 2.09 -57.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.843 kcal (2) G-P(sol) polarization free energy of solvation -59.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds