Wall clock time and date at job start Tue Mar 31 2020 07:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.09000 * 109.46941 * 304.99900 * 3 2 1 5 5 N 1.46496 * 109.46965 * 65.00454 * 3 2 1 6 6 C 1.34777 * 119.99786 * 274.99141 * 5 3 2 7 7 O 1.21585 * 120.00005 * 0.02562 * 6 5 3 8 8 C 1.47637 * 119.99862 * 180.02562 * 6 5 3 9 9 C 1.40010 * 119.89995 * 359.72937 * 8 6 5 10 10 C 1.36311 * 120.10910 * 179.75684 * 9 8 6 11 11 C 1.40885 * 119.89524 * 0.51585 * 10 9 8 12 12 C 1.41104 * 120.10955 * 179.71430 * 11 10 9 13 13 H 1.07998 * 120.00549 * 204.64545 * 12 11 10 14 14 C 1.40233 * 119.99549 * 24.65114 * 12 11 10 15 15 N 1.30636 * 120.00284 * 17.87045 * 14 12 11 16 16 Si 1.86806 * 119.99614 * 197.87384 * 14 12 11 17 17 H 1.48501 * 109.47222 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46947 * 119.99914 * 16 14 12 19 19 H 1.48497 * 109.46902 * 239.99557 * 16 14 12 20 20 C 1.40889 * 119.79090 * 359.74060 * 11 10 9 21 21 C 1.36322 * 119.89412 * 359.97438 * 20 11 10 22 22 C 1.52998 * 109.46644 * 185.00203 * 3 2 1 23 23 H 1.08998 * 109.47210 * 184.99699 * 22 3 2 24 24 O 1.42902 * 109.47488 * 304.99787 * 22 3 2 25 25 C 1.53005 * 109.47398 * 65.00183 * 22 3 2 26 26 C 1.52996 * 109.47263 * 175.00009 * 25 22 3 27 27 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47018 * 59.99755 * 1 2 3 29 29 H 1.08998 * 109.46593 * 299.99992 * 1 2 3 30 30 H 1.08996 * 109.47018 * 120.00245 * 2 1 3 31 31 H 1.08998 * 109.46593 * 240.00008 * 2 1 3 32 32 H 0.96995 * 119.99941 * 95.00168 * 5 3 2 33 33 H 1.08004 * 119.94114 * 0.02562 * 9 8 6 34 34 H 1.08007 * 120.05510 * 180.22795 * 10 9 8 35 35 H 0.96998 * 120.00349 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.06064 * 179.97438 * 20 11 10 37 37 H 1.07994 * 119.95181 * 179.97438 * 21 20 11 38 38 H 0.96702 * 113.99679 * 60.00279 * 24 22 3 39 39 H 1.09005 * 109.46814 * 294.99738 * 25 22 3 40 40 H 1.08994 * 109.46988 * 54.99439 * 25 22 3 41 41 H 1.08997 * 109.47247 * 180.02562 * 26 25 22 42 42 H 1.09005 * 109.47235 * 300.00115 * 26 25 22 43 43 H 1.09003 * 109.47655 * 59.99635 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6526 2.0974 1.2518 6 6 0.4353 2.6644 1.3670 7 8 -0.3413 2.6320 0.4321 8 6 0.0450 3.3249 2.6284 9 6 0.9389 3.3560 3.7055 10 6 0.5849 3.9690 4.8704 11 6 -0.6870 4.5624 4.9933 12 6 -1.0605 5.1929 6.1991 13 1 -2.1048 5.2904 6.4567 14 6 -0.0756 5.6930 7.0631 15 7 1.1370 5.8980 6.6223 16 14 -0.4976 6.0658 8.8442 17 1 -1.9275 5.7500 9.0907 18 1 0.3535 5.2398 9.7379 19 1 -0.2542 7.5045 9.1198 20 6 -1.5852 4.5238 3.9085 21 6 -1.2200 3.9136 2.7454 22 6 3.5649 1.4442 -0.1258 23 1 3.9357 2.4653 -0.0367 24 8 4.1294 0.6403 0.9120 25 6 3.9650 0.8735 -1.4878 26 6 5.4803 0.9899 -1.6644 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.2721 2.1230 1.9977 33 1 1.9122 2.8974 3.6118 34 1 1.2765 3.9957 5.6996 35 1 1.8181 6.2443 7.2198 36 1 -2.5614 4.9770 3.9980 37 1 -1.9079 3.8832 1.9135 38 1 3.8428 -0.2831 0.8942 39 1 3.6724 -0.1752 -1.5425 40 1 3.4631 1.4323 -2.2776 41 1 5.7652 0.5837 -2.6349 42 1 5.7730 2.0385 -1.6097 43 1 5.9822 0.4310 -0.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456698784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:04 Heat of formation + Delta-G solvation = -94.888585 kcal Electronic energy + Delta-G solvation = -23245.490348 eV Core-core repulsion = 19868.219709 eV Total energy + Delta-G solvation = -3377.270638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79770 -38.18592 -36.98989 -34.44156 -33.85478 -32.94923 -32.01719 -30.04711 -29.42612 -28.08725 -25.84508 -23.92323 -22.70003 -21.67100 -20.96704 -20.21117 -19.50712 -17.51694 -17.17252 -16.31793 -15.87869 -15.72946 -15.34978 -14.92750 -14.59708 -14.01098 -13.90626 -13.44337 -13.19307 -12.99717 -12.69358 -12.62278 -12.31826 -12.15426 -12.00883 -11.88203 -11.75524 -11.49056 -11.29585 -11.25978 -11.11161 -10.93519 -10.70123 -10.64362 -10.56957 -10.04275 -10.01698 -9.54791 -9.33337 -8.89908 -8.48959 -7.70223 -7.52621 -7.02358 -4.58910 2.25131 2.91336 2.95894 3.01377 3.05412 3.71376 3.74953 3.88422 4.31133 4.54364 4.63062 4.75082 4.85423 5.05544 5.21286 5.25092 5.48144 5.56144 5.59178 5.60661 5.73300 5.77598 5.84768 6.05710 6.07774 6.08618 6.13973 6.16833 6.33128 6.35734 6.68281 6.78628 6.84118 6.99062 7.09646 7.15353 7.45350 7.50625 7.67848 7.81850 7.87916 8.08728 8.30280 8.41789 8.64649 8.77029 9.12471 9.89638 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.003460 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.620597 B = 8089.898277 C = 8869.794860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.116 3.884 4 H 0.090 0.910 5 N -0.732 5.732 6 C 0.572 3.428 7 O -0.572 6.572 8 C -0.285 4.285 9 C -0.062 4.062 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.443 4.443 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.912 3.088 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.240 4.240 21 C -0.022 4.022 22 C 0.098 3.902 23 H 0.104 0.896 24 O -0.557 6.557 25 C -0.154 4.154 26 C -0.148 4.148 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.372 0.628 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -8.673 -8.336 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.010 3.990 4 H 0.108 0.892 5 N -0.385 5.385 6 C 0.367 3.633 7 O -0.454 6.454 8 C -0.289 4.289 9 C -0.081 4.081 10 C -0.198 4.198 11 C 0.125 3.875 12 C -0.471 4.471 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.260 4.260 21 C -0.041 4.041 22 C 0.039 3.961 23 H 0.122 0.878 24 O -0.363 6.363 25 C -0.192 4.192 26 C -0.205 4.205 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.220 0.780 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.740 -8.027 -8.774 13.669 hybrid contribution -0.014 -0.214 0.947 0.971 sum 6.726 -8.241 -7.827 13.206 Atomic orbital electron populations 1.21764 0.94366 1.00030 1.03805 1.22001 0.98006 0.96367 1.01293 1.21552 0.94176 0.93738 0.89485 0.89191 1.45881 1.17724 1.59185 1.15722 1.18532 0.80220 0.76487 0.88023 1.90630 1.51776 1.61703 1.41309 1.18923 0.98449 1.16967 0.94608 1.20501 0.96256 0.97715 0.93674 1.20974 0.98832 1.02325 0.97637 1.17786 0.91183 0.87141 0.91358 1.19874 0.94668 1.30622 1.01914 0.89716 1.26099 0.94303 0.93121 1.01173 1.69747 1.03344 1.29171 1.37176 0.86181 0.80409 0.78795 0.81015 1.18079 1.19379 1.19686 1.20715 1.01111 1.09950 0.94176 1.20354 0.93915 0.93531 0.96333 1.22292 0.91204 0.95822 0.86830 0.87817 1.86587 1.72135 1.24793 1.52773 1.22227 0.97442 1.01921 0.97608 1.21700 0.95301 1.02104 1.01440 0.94148 0.92354 0.91561 0.91960 0.91646 0.76334 0.89262 0.86242 0.90288 0.88464 0.88181 0.77983 0.91235 0.90834 0.92905 0.92702 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.51 37.16 0.32 -1.78 16 2 C -0.14 -1.64 4.89 -26.73 -0.13 -1.77 16 3 C 0.12 1.54 2.13 -67.93 -0.14 1.40 16 4 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 5 N -0.73 -12.05 4.96 -54.82 -0.27 -12.33 16 6 C 0.57 11.81 6.33 -12.42 -0.08 11.73 16 7 O -0.57 -12.81 13.45 5.29 0.07 -12.74 16 8 C -0.28 -6.49 5.89 -104.73 -0.62 -7.11 16 9 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 10 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 11 C 0.13 3.29 5.57 -106.81 -0.60 2.70 16 12 C -0.44 -11.09 9.04 -37.75 -0.34 -11.43 16 13 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 14 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 15 N -0.77 -18.61 10.95 55.56 0.61 -18.00 16 16 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 21 C -0.02 -0.52 9.52 -39.60 -0.38 -0.90 16 22 C 0.10 1.06 2.86 -26.73 -0.08 0.99 16 23 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 24 O -0.56 -6.11 12.51 -35.23 -0.44 -6.55 16 25 C -0.15 -1.32 5.25 -26.73 -0.14 -1.46 16 26 C -0.15 -1.21 9.81 37.16 0.36 -0.85 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 29 H 0.07 1.19 5.64 -51.93 -0.29 0.90 16 30 H 0.06 0.69 7.00 -51.93 -0.36 0.33 16 31 H 0.07 0.62 6.45 -51.93 -0.34 0.29 16 32 H 0.40 6.37 6.38 -40.82 -0.26 6.11 16 33 H 0.09 1.74 6.37 -52.48 -0.33 1.41 16 34 H 0.12 3.00 6.16 -52.48 -0.32 2.68 16 35 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 38 H 0.37 3.07 7.31 45.56 0.33 3.40 16 39 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -27.89 343.46 -8.51 -36.40 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -5.62 Total: 15.28 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.01 Total: -19.58 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.34 Total: -30.32 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.37 Total: -19.29 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.89 -8.51 -36.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.484 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds