Wall clock time and date at job start Tue Mar 31 2020 07:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.09000 * 109.46941 * 304.99900 * 3 2 1 5 5 N 1.46496 * 109.46965 * 65.00454 * 3 2 1 6 6 C 1.34777 * 119.99786 * 274.99141 * 5 3 2 7 7 O 1.21585 * 120.00005 * 0.02562 * 6 5 3 8 8 C 1.47637 * 119.99862 * 180.02562 * 6 5 3 9 9 C 1.40010 * 119.89995 * 359.72937 * 8 6 5 10 10 C 1.36311 * 120.10910 * 179.75684 * 9 8 6 11 11 C 1.40885 * 119.89524 * 0.51585 * 10 9 8 12 12 C 1.41104 * 120.10955 * 179.71430 * 11 10 9 13 13 H 1.07998 * 120.00549 * 204.64545 * 12 11 10 14 14 C 1.40233 * 119.99549 * 24.65114 * 12 11 10 15 15 N 1.30636 * 120.00284 * 17.87045 * 14 12 11 16 16 Si 1.86806 * 119.99614 * 197.87384 * 14 12 11 17 17 H 1.48501 * 109.47222 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46947 * 119.99914 * 16 14 12 19 19 H 1.48497 * 109.46902 * 239.99557 * 16 14 12 20 20 C 1.40889 * 119.79090 * 359.74060 * 11 10 9 21 21 C 1.36322 * 119.89412 * 359.97438 * 20 11 10 22 22 C 1.52998 * 109.46644 * 185.00203 * 3 2 1 23 23 H 1.08998 * 109.47210 * 184.99699 * 22 3 2 24 24 O 1.42902 * 109.47488 * 304.99787 * 22 3 2 25 25 C 1.53005 * 109.47398 * 65.00183 * 22 3 2 26 26 C 1.52996 * 109.47263 * 175.00009 * 25 22 3 27 27 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47018 * 59.99755 * 1 2 3 29 29 H 1.08998 * 109.46593 * 299.99992 * 1 2 3 30 30 H 1.08996 * 109.47018 * 120.00245 * 2 1 3 31 31 H 1.08998 * 109.46593 * 240.00008 * 2 1 3 32 32 H 0.96995 * 119.99941 * 95.00168 * 5 3 2 33 33 H 1.08004 * 119.94114 * 0.02562 * 9 8 6 34 34 H 1.08007 * 120.05510 * 180.22795 * 10 9 8 35 35 H 0.96998 * 120.00349 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.06064 * 179.97438 * 20 11 10 37 37 H 1.07994 * 119.95181 * 179.97438 * 21 20 11 38 38 H 0.96702 * 113.99679 * 60.00279 * 24 22 3 39 39 H 1.09005 * 109.46814 * 294.99738 * 25 22 3 40 40 H 1.08994 * 109.46988 * 54.99439 * 25 22 3 41 41 H 1.08997 * 109.47247 * 180.02562 * 26 25 22 42 42 H 1.09005 * 109.47235 * 300.00115 * 26 25 22 43 43 H 1.09003 * 109.47655 * 59.99635 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6526 2.0974 1.2518 6 6 0.4353 2.6644 1.3670 7 8 -0.3413 2.6320 0.4321 8 6 0.0450 3.3249 2.6284 9 6 0.9389 3.3560 3.7055 10 6 0.5849 3.9690 4.8704 11 6 -0.6870 4.5624 4.9933 12 6 -1.0605 5.1929 6.1991 13 1 -2.1048 5.2904 6.4567 14 6 -0.0756 5.6930 7.0631 15 7 1.1370 5.8980 6.6223 16 14 -0.4976 6.0658 8.8442 17 1 -1.9275 5.7500 9.0907 18 1 0.3535 5.2398 9.7379 19 1 -0.2542 7.5045 9.1198 20 6 -1.5852 4.5238 3.9085 21 6 -1.2200 3.9136 2.7454 22 6 3.5649 1.4442 -0.1258 23 1 3.9357 2.4653 -0.0367 24 8 4.1294 0.6403 0.9120 25 6 3.9650 0.8735 -1.4878 26 6 5.4803 0.9899 -1.6644 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.2721 2.1230 1.9977 33 1 1.9122 2.8974 3.6118 34 1 1.2765 3.9957 5.6996 35 1 1.8181 6.2443 7.2198 36 1 -2.5614 4.9770 3.9980 37 1 -1.9079 3.8832 1.9135 38 1 3.8428 -0.2831 0.8942 39 1 3.6724 -0.1752 -1.5425 40 1 3.4631 1.4323 -2.2776 41 1 5.7652 0.5837 -2.6349 42 1 5.7730 2.0385 -1.6097 43 1 5.9822 0.4310 -0.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456698784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:03 Heat of formation + Delta-G solvation = -112.083362 kcal Electronic energy + Delta-G solvation = -23246.235969 eV Core-core repulsion = 19868.219709 eV Total energy + Delta-G solvation = -3378.016260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17123 -39.55555 -38.60502 -35.72150 -35.60427 -33.80948 -33.25695 -31.76355 -31.29175 -29.19881 -27.55257 -24.95574 -24.00404 -22.98499 -22.73625 -21.31960 -21.09314 -19.36396 -18.56416 -17.52988 -17.26152 -16.80969 -16.70593 -16.15350 -15.77182 -15.59177 -15.45719 -14.96422 -14.54762 -14.41030 -14.13011 -13.87871 -13.61114 -13.58072 -13.24794 -13.15623 -12.89698 -12.84783 -12.66995 -12.59133 -12.48678 -12.33615 -11.91122 -11.75325 -11.62688 -11.55624 -11.36869 -11.12831 -10.98296 -10.53994 -9.88805 -9.57167 -9.39596 -8.79254 -6.48145 0.46419 1.14731 1.38335 1.42067 1.55079 2.14531 2.19275 2.40330 2.80316 3.46374 3.65934 3.70061 3.85041 4.07487 4.16489 4.20883 4.31335 4.34523 4.44866 4.46802 4.62843 4.72385 4.77197 4.87944 4.92288 4.98311 5.02684 5.03879 5.14595 5.16683 5.20618 5.30618 5.34304 5.43694 5.47859 5.58330 5.70580 5.83720 5.95563 5.99906 6.22945 6.54377 6.75805 6.77745 6.81280 6.89573 7.52603 8.16198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.003460 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.620597 B = 8089.898277 C = 8869.794860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.113 3.887 4 H 0.074 0.926 5 N -0.718 5.718 6 C 0.574 3.426 7 O -0.593 6.593 8 C -0.293 4.293 9 C -0.055 4.055 10 C -0.198 4.198 11 C 0.102 3.898 12 C -0.475 4.475 13 H 0.084 0.916 14 C 0.038 3.962 15 N -0.799 5.799 16 Si 0.988 3.012 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.264 1.264 20 C -0.255 4.255 21 C -0.032 4.032 22 C 0.109 3.891 23 H 0.092 0.908 24 O -0.566 6.566 25 C -0.148 4.148 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.405 0.595 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.297 0.703 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.386 0.614 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -9.973 -8.465 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.008 3.992 4 H 0.092 0.908 5 N -0.370 5.370 6 C 0.367 3.633 7 O -0.477 6.477 8 C -0.298 4.298 9 C -0.074 4.074 10 C -0.217 4.217 11 C 0.098 3.902 12 C -0.502 4.502 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.423 5.423 16 Si 0.808 3.192 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.188 1.188 20 C -0.274 4.274 21 C -0.051 4.051 22 C 0.049 3.951 23 H 0.110 0.890 24 O -0.374 6.374 25 C -0.186 4.186 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.242 0.758 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.280 -9.354 -8.927 15.354 hybrid contribution -0.452 0.143 0.875 0.995 sum 7.828 -9.212 -8.051 14.524 Atomic orbital electron populations 1.21706 0.96551 1.00410 1.01135 1.21982 0.95828 0.95517 1.03614 1.21812 0.96065 0.94195 0.87102 0.90770 1.45783 1.16114 1.58002 1.17091 1.18240 0.81377 0.76742 0.86940 1.90618 1.52760 1.62611 1.41687 1.19268 0.98182 1.16492 0.95833 1.20717 0.97285 0.96727 0.92669 1.20998 0.98773 1.03616 0.98361 1.18123 0.91964 0.87962 0.92114 1.20125 0.95304 1.31955 1.02837 0.89744 1.26935 0.93822 0.92271 1.05117 1.69766 1.04297 1.29217 1.38980 0.85065 0.80067 0.78898 0.75214 1.18055 1.18427 1.18818 1.20862 1.01507 1.10631 0.94410 1.20500 0.94665 0.93774 0.96205 1.22139 0.88912 0.95744 0.88286 0.89015 1.86575 1.72076 1.25876 1.52882 1.22192 0.97740 1.02789 0.95893 1.21686 0.94849 1.01768 1.02102 0.92245 0.93883 0.95320 0.90592 0.88244 0.75841 0.86361 0.87009 0.89219 0.87884 0.87899 0.76411 0.89477 0.90600 0.91558 0.93369 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.51 71.99 0.61 -3.36 16 2 C -0.13 -2.75 4.89 30.60 0.15 -2.60 16 3 C 0.11 2.80 2.13 44.99 0.10 2.90 16 4 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 5 N -0.72 -22.93 4.96 -445.61 -2.21 -25.14 16 6 C 0.57 23.70 6.33 86.73 0.55 24.25 16 7 O -0.59 -26.88 13.45 -3.98 -0.05 -26.93 16 8 C -0.29 -13.53 5.89 -19.93 -0.12 -13.65 16 9 C -0.05 -2.48 9.47 22.25 0.21 -2.27 16 10 C -0.20 -10.01 8.63 22.47 0.19 -9.82 16 11 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 12 C -0.47 -24.37 9.04 23.46 0.21 -24.15 16 13 H 0.08 4.17 7.91 -2.91 -0.02 4.14 16 14 C 0.04 1.76 5.14 85.36 0.44 2.20 16 15 N -0.80 -38.80 10.95 21.87 0.24 -38.56 16 16 Si 0.99 35.26 29.60 68.60 2.03 37.29 16 17 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 18 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 19 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 20 C -0.25 -12.85 9.73 22.47 0.22 -12.63 16 21 C -0.03 -1.57 9.52 22.26 0.21 -1.35 16 22 C 0.11 2.11 2.86 30.60 0.09 2.19 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 24 O -0.57 -10.80 12.51 -148.98 -1.86 -12.67 16 25 C -0.15 -2.09 5.25 30.59 0.16 -1.93 16 26 C -0.15 -2.02 9.81 71.98 0.71 -1.31 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 29 H 0.03 1.01 5.64 -2.39 -0.01 1.00 16 30 H 0.08 1.42 7.00 -2.39 -0.02 1.41 16 31 H 0.10 1.47 6.45 -2.39 -0.02 1.45 16 32 H 0.40 12.26 6.38 -92.71 -0.59 11.67 16 33 H 0.12 4.50 6.37 -2.91 -0.02 4.48 16 34 H 0.11 5.74 6.16 -2.91 -0.02 5.73 16 35 H 0.30 12.75 8.29 -92.71 -0.77 11.99 16 36 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.10 4.84 7.63 -2.91 -0.02 4.81 16 38 H 0.39 4.95 7.31 -74.06 -0.54 4.41 16 39 H 0.09 0.95 6.70 -2.38 -0.02 0.93 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.06 0.84 7.82 -2.39 -0.02 0.83 16 Total: -1.00 -61.75 343.46 1.65 -60.10 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.10 Total: 42.19 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.61 Total: -36.28 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.97 Total: -63.70 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.92 Total: -39.60 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -61.75 1.65 -60.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.987 kcal (2) G-P(sol) polarization free energy of solvation -61.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds