Wall clock time and date at job start Tue Mar 31 2020 07:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 H 1.09004 * 109.46921 * 304.99304 * 3 2 1 5 5 O 1.42898 * 109.47307 * 64.99443 * 3 2 1 6 6 C 1.53003 * 109.47260 * 184.99833 * 3 2 1 7 7 H 1.09002 * 109.46856 * 54.99207 * 6 3 2 8 8 C 1.52997 * 109.46744 * 294.99973 * 6 3 2 9 9 C 1.52999 * 109.46961 * 174.99972 * 8 6 3 10 10 N 1.46496 * 109.47033 * 174.99814 * 6 3 2 11 11 C 1.34780 * 119.99606 * 204.99898 * 10 6 3 12 12 O 1.21585 * 120.00248 * 0.02562 * 11 10 6 13 13 C 1.47644 * 119.99682 * 179.97438 * 11 10 6 14 14 C 1.40019 * 119.89372 * 179.97438 * 13 11 10 15 15 C 1.36320 * 120.10443 * 180.27875 * 14 13 11 16 16 C 1.40882 * 119.89049 * 359.50133 * 15 14 13 17 17 C 1.41107 * 120.10130 * 180.22956 * 16 15 14 18 18 H 1.08002 * 120.00312 * 204.80378 * 17 16 15 19 19 C 1.40229 * 120.00101 * 24.80680 * 17 16 15 20 20 N 1.30645 * 119.99784 * 17.72871 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 197.73117 * 19 17 16 22 22 H 1.48496 * 109.47041 * 59.99770 * 21 19 17 23 23 H 1.48497 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46946 * 299.99529 * 21 19 17 25 25 C 1.40893 * 119.79733 * 0.49872 * 16 15 14 26 26 C 1.36322 * 119.88770 * 359.75551 * 25 16 15 27 27 H 1.09008 * 109.46565 * 60.00298 * 1 2 3 28 28 H 1.08995 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47321 * 300.00459 * 1 2 3 30 30 H 1.08997 * 109.47321 * 239.99541 * 2 1 3 31 31 H 1.09006 * 109.47039 * 119.99490 * 2 1 3 32 32 H 0.96698 * 113.99747 * 60.00185 * 5 3 2 33 33 H 1.08999 * 109.47170 * 294.99609 * 8 6 3 34 34 H 1.08999 * 109.47817 * 54.99729 * 8 6 3 35 35 H 1.09007 * 109.47160 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47300 * 300.00151 * 9 8 6 37 37 H 1.08997 * 109.47310 * 59.99765 * 9 8 6 38 38 H 0.96994 * 120.00102 * 24.99461 * 10 6 3 39 39 H 1.08004 * 119.94630 * 359.97438 * 14 13 11 40 40 H 1.08000 * 120.04629 * 179.74253 * 15 14 13 41 41 H 0.97002 * 119.99718 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.05567 * 179.73136 * 25 16 15 43 43 H 1.07997 * 119.94394 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 1 3.8571 0.8799 -1.0112 8 6 4.1797 0.7976 1.1171 9 6 5.6950 0.6862 0.9373 10 7 4.0433 2.8237 -0.2458 11 6 5.2191 3.0787 -0.8533 12 8 5.8825 2.1639 -1.3021 13 6 5.7010 4.4689 -0.9749 14 6 6.9231 4.7313 -1.6060 15 6 7.3748 6.0127 -1.7156 16 6 6.6049 7.0749 -1.2019 17 6 7.0660 8.4035 -1.3172 18 1 6.7290 9.1547 -0.6182 19 6 7.9617 8.7486 -2.3394 20 7 8.1048 7.9648 -3.3748 21 14 8.9505 10.3291 -2.2208 22 1 9.7954 10.2938 -1.0001 23 1 9.8178 10.4615 -3.4189 24 1 8.0247 11.4879 -2.1488 25 6 5.3759 6.8060 -0.5677 26 6 4.9349 5.5207 -0.4582 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0141 1.6543 2.0138 33 1 3.9618 1.4109 1.9914 34 1 3.7563 -0.1971 1.2564 35 1 6.1332 0.2258 1.8229 36 1 5.9131 0.0729 0.0630 37 1 6.1185 1.6808 0.7981 38 1 3.5139 3.5536 0.1118 39 1 7.5110 3.9165 -2.0023 40 1 8.3195 6.2136 -2.1989 41 1 8.7247 8.2033 -4.0817 42 1 4.7844 7.6167 -0.1686 43 1 3.9931 5.3135 0.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456698793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:07 Heat of formation + Delta-G solvation = -94.717286 kcal Electronic energy + Delta-G solvation = -23189.323264 eV Core-core repulsion = 19812.060054 eV Total energy + Delta-G solvation = -3377.263210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.80790 -38.19312 -36.98824 -34.44237 -33.87789 -32.96113 -31.98292 -30.04102 -29.48409 -28.06460 -25.84128 -23.92362 -22.69525 -21.74447 -20.93222 -20.18335 -19.53163 -17.52161 -17.18433 -16.38233 -15.88289 -15.65896 -15.35918 -14.95676 -14.58381 -14.01775 -13.91048 -13.45766 -13.22345 -12.97110 -12.65035 -12.63538 -12.33635 -12.20244 -12.06074 -11.84820 -11.75992 -11.47450 -11.31016 -11.20881 -11.12708 -10.97278 -10.70684 -10.66576 -10.54688 -10.07699 -10.02271 -9.51301 -9.31345 -8.90952 -8.49925 -7.67540 -7.54345 -7.00192 -4.58375 2.26646 2.93406 2.96104 2.99499 3.05726 3.69775 3.75531 3.89480 4.29073 4.54703 4.62344 4.73465 4.83854 5.04439 5.20409 5.23894 5.46799 5.54755 5.58826 5.60514 5.72196 5.76983 5.83595 6.02342 6.04067 6.07442 6.14062 6.15828 6.30428 6.35907 6.68709 6.82293 6.86137 7.01848 7.09235 7.13401 7.45952 7.48165 7.64730 7.81512 7.90084 8.07871 8.30633 8.45130 8.65061 8.77788 9.12436 9.91745 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.003167 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.206824 B = 8839.208547 C = 9232.726139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.098 3.902 4 H 0.104 0.896 5 O -0.558 6.558 6 C 0.116 3.884 7 H 0.090 0.910 8 C -0.138 4.138 9 C -0.143 4.143 10 N -0.733 5.733 11 C 0.572 3.428 12 O -0.569 6.569 13 C -0.284 4.284 14 C -0.036 4.036 15 C -0.183 4.183 16 C 0.129 3.871 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.236 4.236 26 C -0.049 4.049 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.372 0.628 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 -9.961 6.239 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.039 3.961 4 H 0.122 0.878 5 O -0.364 6.364 6 C 0.010 3.990 7 H 0.108 0.892 8 C -0.176 4.176 9 C -0.200 4.200 10 N -0.386 5.386 11 C 0.367 3.633 12 O -0.451 6.451 13 C -0.289 4.289 14 C -0.055 4.055 15 C -0.203 4.203 16 C 0.126 3.874 17 C -0.472 4.472 18 H 0.102 0.898 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.255 4.255 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.220 0.780 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.236 0.764 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.598 -10.231 5.259 14.361 hybrid contribution 0.453 0.644 0.409 0.887 sum -8.145 -9.587 5.668 13.798 Atomic orbital electron populations 1.21700 0.95020 1.01360 1.02455 1.22229 0.97067 0.96820 1.03113 1.22290 0.92581 0.93260 0.87982 0.87831 1.86576 1.76799 1.57349 1.15631 1.21555 0.93053 0.85054 0.99311 0.89171 1.21997 0.97809 0.99899 0.97937 1.21766 0.94462 1.03349 1.00422 1.45886 1.23294 1.07494 1.61934 1.18547 0.79465 0.89557 0.75762 1.90638 1.56909 1.47053 1.50524 1.18933 1.01496 0.90414 1.18008 1.20474 0.93766 0.96377 0.94918 1.21011 1.01378 0.91028 1.06853 1.17773 0.89115 0.93337 0.87219 1.19804 1.21217 0.95341 1.10847 0.89812 1.26102 0.95591 0.99096 0.93960 1.69744 1.27928 1.36356 1.05274 0.86266 0.79864 0.81107 0.79047 1.18485 1.20046 1.18693 1.20673 0.98328 0.95061 1.11441 1.20389 0.96559 0.93168 0.96676 0.92711 0.92893 0.92064 0.90811 0.91223 0.77956 0.91983 0.91646 0.94136 0.92329 0.91557 0.76450 0.88247 0.86221 0.90135 0.88543 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.81 16 2 C -0.15 -1.29 5.25 -26.73 -0.14 -1.43 16 3 C 0.10 1.04 2.86 -26.73 -0.08 0.96 16 4 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 5 O -0.56 -5.88 12.51 -35.23 -0.44 -6.33 16 6 C 0.12 1.52 2.13 -67.93 -0.14 1.38 16 7 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 8 C -0.14 -1.62 4.89 -26.73 -0.13 -1.75 16 9 C -0.14 -2.10 8.51 37.16 0.32 -1.79 16 10 N -0.73 -11.85 4.96 -54.81 -0.27 -12.12 16 11 C 0.57 11.79 6.33 -12.42 -0.08 11.72 16 12 O -0.57 -12.91 13.46 5.29 0.07 -12.84 16 13 C -0.28 -6.47 5.89 -104.73 -0.62 -7.09 16 14 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 15 C -0.18 -4.72 8.63 -39.27 -0.34 -5.06 16 16 C 0.13 3.30 5.57 -106.80 -0.60 2.71 16 17 C -0.44 -11.14 9.04 -37.75 -0.34 -11.48 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 20 N -0.77 -18.97 10.95 55.56 0.61 -18.37 16 21 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.28 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 25 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 26 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 27 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 32 H 0.37 2.94 7.31 45.56 0.33 3.27 16 33 H 0.06 0.68 7.00 -51.93 -0.36 0.31 16 34 H 0.07 0.61 6.45 -51.93 -0.34 0.28 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 37 H 0.07 1.20 5.65 -51.93 -0.29 0.91 16 38 H 0.40 6.11 6.38 -40.82 -0.26 5.85 16 39 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 41 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 43 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -28.14 343.47 -8.51 -36.65 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.62 Total: 14.90 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.01 Total: -19.56 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.34 Total: -30.49 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.37 Total: -19.17 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.14 -8.51 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.064 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds