Wall clock time and date at job start Tue Mar 31 2020 07:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 H 1.09004 * 109.46921 * 304.99304 * 3 2 1 5 5 O 1.42898 * 109.47307 * 64.99443 * 3 2 1 6 6 C 1.53003 * 109.47260 * 184.99833 * 3 2 1 7 7 H 1.09002 * 109.46856 * 54.99207 * 6 3 2 8 8 C 1.52997 * 109.46744 * 294.99973 * 6 3 2 9 9 C 1.52999 * 109.46961 * 174.99972 * 8 6 3 10 10 N 1.46496 * 109.47033 * 174.99814 * 6 3 2 11 11 C 1.34780 * 119.99606 * 204.99898 * 10 6 3 12 12 O 1.21585 * 120.00248 * 0.02562 * 11 10 6 13 13 C 1.47644 * 119.99682 * 179.97438 * 11 10 6 14 14 C 1.40019 * 119.89372 * 179.97438 * 13 11 10 15 15 C 1.36320 * 120.10443 * 180.27875 * 14 13 11 16 16 C 1.40882 * 119.89049 * 359.50133 * 15 14 13 17 17 C 1.41107 * 120.10130 * 180.22956 * 16 15 14 18 18 H 1.08002 * 120.00312 * 204.80378 * 17 16 15 19 19 C 1.40229 * 120.00101 * 24.80680 * 17 16 15 20 20 N 1.30645 * 119.99784 * 17.72871 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 197.73117 * 19 17 16 22 22 H 1.48496 * 109.47041 * 59.99770 * 21 19 17 23 23 H 1.48497 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46946 * 299.99529 * 21 19 17 25 25 C 1.40893 * 119.79733 * 0.49872 * 16 15 14 26 26 C 1.36322 * 119.88770 * 359.75551 * 25 16 15 27 27 H 1.09008 * 109.46565 * 60.00298 * 1 2 3 28 28 H 1.08995 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47321 * 300.00459 * 1 2 3 30 30 H 1.08997 * 109.47321 * 239.99541 * 2 1 3 31 31 H 1.09006 * 109.47039 * 119.99490 * 2 1 3 32 32 H 0.96698 * 113.99747 * 60.00185 * 5 3 2 33 33 H 1.08999 * 109.47170 * 294.99609 * 8 6 3 34 34 H 1.08999 * 109.47817 * 54.99729 * 8 6 3 35 35 H 1.09007 * 109.47160 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47300 * 300.00151 * 9 8 6 37 37 H 1.08997 * 109.47310 * 59.99765 * 9 8 6 38 38 H 0.96994 * 120.00102 * 24.99461 * 10 6 3 39 39 H 1.08004 * 119.94630 * 359.97438 * 14 13 11 40 40 H 1.08000 * 120.04629 * 179.74253 * 15 14 13 41 41 H 0.97002 * 119.99718 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.05567 * 179.73136 * 25 16 15 43 43 H 1.07997 * 119.94394 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 1 3.8571 0.8799 -1.0112 8 6 4.1797 0.7976 1.1171 9 6 5.6950 0.6862 0.9373 10 7 4.0433 2.8237 -0.2458 11 6 5.2191 3.0787 -0.8533 12 8 5.8825 2.1639 -1.3021 13 6 5.7010 4.4689 -0.9749 14 6 6.9231 4.7313 -1.6060 15 6 7.3748 6.0127 -1.7156 16 6 6.6049 7.0749 -1.2019 17 6 7.0660 8.4035 -1.3172 18 1 6.7290 9.1547 -0.6182 19 6 7.9617 8.7486 -2.3394 20 7 8.1048 7.9648 -3.3748 21 14 8.9505 10.3291 -2.2208 22 1 9.7954 10.2938 -1.0001 23 1 9.8178 10.4615 -3.4189 24 1 8.0247 11.4879 -2.1488 25 6 5.3759 6.8060 -0.5677 26 6 4.9349 5.5207 -0.4582 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0141 1.6543 2.0138 33 1 3.9618 1.4109 1.9914 34 1 3.7563 -0.1971 1.2564 35 1 6.1332 0.2258 1.8229 36 1 5.9131 0.0729 0.0630 37 1 6.1185 1.6808 0.7981 38 1 3.5139 3.5536 0.1118 39 1 7.5110 3.9165 -2.0023 40 1 8.3195 6.2136 -2.1989 41 1 8.7247 8.2033 -4.0817 42 1 4.7844 7.6167 -0.1686 43 1 3.9931 5.3135 0.0281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456698793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:06 Heat of formation + Delta-G solvation = -112.396328 kcal Electronic energy + Delta-G solvation = -23190.089885 eV Core-core repulsion = 19812.060054 eV Total energy + Delta-G solvation = -3378.029831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17156 -39.55058 -38.60132 -35.70018 -35.64113 -33.78428 -33.21687 -31.85042 -31.27011 -29.17660 -27.55064 -24.94026 -24.00336 -23.13633 -22.57961 -21.31141 -21.12190 -19.35440 -18.59194 -17.57638 -17.08909 -16.87122 -16.73108 -16.16127 -15.74864 -15.58129 -15.48660 -14.96229 -14.53571 -14.38731 -14.09695 -13.98296 -13.58693 -13.57429 -13.24590 -13.12666 -12.93383 -12.80715 -12.66833 -12.59980 -12.50498 -12.31216 -11.91265 -11.78501 -11.62323 -11.54511 -11.35670 -11.11430 -10.98792 -10.54623 -9.88818 -9.56623 -9.40111 -8.78812 -6.48231 0.46973 1.14996 1.37333 1.44332 1.51470 2.13178 2.19747 2.39882 2.81066 3.47109 3.66151 3.70755 3.85487 4.08062 4.16754 4.21335 4.32894 4.35431 4.40950 4.47118 4.63190 4.72769 4.77854 4.88225 4.96994 4.98603 5.01466 5.03785 5.15517 5.18240 5.23757 5.26821 5.34902 5.44387 5.47527 5.58757 5.70438 5.79803 5.97114 6.02094 6.20904 6.56035 6.76913 6.77904 6.82256 6.90169 7.53478 8.16256 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.003167 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.206824 B = 8839.208547 C = 9232.726139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.094 0.906 5 O -0.565 6.565 6 C 0.113 3.887 7 H 0.072 0.928 8 C -0.131 4.131 9 C -0.141 4.141 10 N -0.716 5.716 11 C 0.573 3.427 12 O -0.595 6.595 13 C -0.293 4.293 14 C -0.049 4.049 15 C -0.204 4.204 16 C 0.101 3.899 17 C -0.475 4.475 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.805 5.805 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.253 1.253 25 C -0.247 4.247 26 C -0.039 4.039 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.386 0.614 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.027 0.973 38 H 0.406 0.594 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.295 0.705 42 H 0.114 0.886 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -10.265 7.826 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.051 3.949 4 H 0.112 0.888 5 O -0.373 6.373 6 C 0.008 3.992 7 H 0.090 0.910 8 C -0.169 4.169 9 C -0.199 4.199 10 N -0.368 5.368 11 C 0.366 3.634 12 O -0.479 6.479 13 C -0.297 4.297 14 C -0.069 4.069 15 C -0.223 4.223 16 C 0.098 3.902 17 C -0.502 4.502 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.428 5.428 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.177 1.177 25 C -0.267 4.267 26 C -0.058 4.058 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.243 0.757 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.402 -10.557 6.873 16.337 hybrid contribution 0.940 0.610 -0.061 1.122 sum -9.462 -9.946 6.812 15.326 Atomic orbital electron populations 1.21684 0.94544 1.02076 1.02068 1.22199 0.97363 0.95145 1.04014 1.22121 0.90118 0.94712 0.87974 0.88843 1.86565 1.76813 1.57852 1.16071 1.21813 0.95108 0.82837 0.99471 0.90984 1.21977 0.95450 1.01957 0.97506 1.21709 0.96833 1.00784 1.00534 1.45744 1.21539 1.09402 1.60147 1.18264 0.80628 0.88295 0.76200 1.90626 1.58026 1.47414 1.51810 1.19264 1.00929 0.92356 1.17185 1.20543 0.94904 0.95782 0.95656 1.20942 1.01348 0.91808 1.08221 1.18126 0.90211 0.93762 0.88108 1.20122 1.22804 0.95440 1.11831 0.89064 1.27023 0.95936 1.02561 0.92981 1.69801 1.28635 1.38316 1.06080 0.85138 0.78202 0.76659 0.79148 1.18233 1.19201 1.17691 1.20936 0.97844 0.96445 1.11432 1.20687 0.97532 0.92022 0.95541 0.93318 0.91655 0.92257 0.90733 0.89523 0.76387 0.90384 0.88291 0.92251 0.94065 0.95368 0.75658 0.89062 0.87876 0.89394 0.86819 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.81 71.98 0.71 -1.21 16 2 C -0.15 -2.03 5.25 30.59 0.16 -1.87 16 3 C 0.11 2.03 2.86 30.60 0.09 2.12 16 4 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 5 O -0.57 -10.00 12.51 -148.98 -1.86 -11.86 16 6 C 0.11 2.73 2.13 44.99 0.10 2.83 16 7 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 8 C -0.13 -2.70 4.89 30.59 0.15 -2.55 16 9 C -0.14 -4.02 8.51 71.98 0.61 -3.41 16 10 N -0.72 -22.18 4.96 -445.59 -2.21 -24.39 16 11 C 0.57 23.70 6.33 86.73 0.55 24.25 16 12 O -0.59 -27.62 13.46 -3.98 -0.05 -27.67 16 13 C -0.29 -13.51 5.89 -19.93 -0.12 -13.63 16 14 C -0.05 -2.54 9.52 22.25 0.21 -2.33 16 15 C -0.20 -11.00 8.63 22.47 0.19 -10.81 16 16 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 17 C -0.47 -24.25 9.04 23.46 0.21 -24.04 16 18 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 19 C 0.03 1.61 5.14 85.35 0.44 2.05 16 20 N -0.80 -40.86 10.95 21.87 0.24 -40.62 16 21 Si 0.99 35.85 29.60 68.60 2.03 37.88 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 24 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 25 C -0.25 -11.54 9.73 22.47 0.22 -11.32 16 26 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.81 7.82 -2.39 -0.02 0.79 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.90 6.70 -2.38 -0.02 0.89 16 32 H 0.39 4.49 7.31 -74.06 -0.54 3.95 16 33 H 0.08 1.40 7.00 -2.39 -0.02 1.39 16 34 H 0.10 1.44 6.45 -2.39 -0.02 1.42 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 37 H 0.03 1.00 5.65 -2.39 -0.01 0.99 16 38 H 0.41 11.47 6.38 -92.71 -0.59 10.88 16 39 H 0.09 4.70 7.63 -2.91 -0.02 4.68 16 40 H 0.10 5.78 6.16 -2.91 -0.02 5.76 16 41 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 42 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.13 4.34 6.37 -2.91 -0.02 4.32 16 Total: -1.00 -63.62 343.47 1.65 -61.97 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.10 Total: 40.84 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 3.61 Total: -36.14 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -1.97 Total: -65.01 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.92 Total: -39.54 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -63.62 1.65 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.426 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds