Wall clock time and date at job start Tue Mar 31 2020 07:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09000 * 109.46834 * 304.99820 * 3 2 1 5 5 O 1.42898 * 109.47199 * 64.99622 * 3 2 1 6 6 C 1.53001 * 109.46831 * 185.00227 * 3 2 1 7 7 H 1.08997 * 109.46960 * 64.99784 * 6 3 2 8 8 C 1.53005 * 109.46840 * 184.99826 * 6 3 2 9 9 C 1.53004 * 109.46921 * 184.99518 * 8 6 3 10 10 N 1.46500 * 109.46759 * 304.99678 * 6 3 2 11 11 C 1.34773 * 119.99626 * 155.00465 * 10 6 3 12 12 O 1.21589 * 120.00381 * 359.97438 * 11 10 6 13 13 C 1.47645 * 119.99748 * 179.97438 * 11 10 6 14 14 C 1.40013 * 119.89472 * 359.72005 * 13 11 10 15 15 C 1.36324 * 120.10190 * 179.76170 * 14 13 11 16 16 C 1.40885 * 119.89543 * 0.51501 * 15 14 13 17 17 C 1.41107 * 120.10692 * 179.71650 * 16 15 14 18 18 H 1.07996 * 120.00430 * 204.65139 * 17 16 15 19 19 C 1.40228 * 119.99414 * 24.65538 * 17 16 15 20 20 N 1.30649 * 120.00334 * 17.86646 * 19 17 16 21 21 Si 1.86804 * 119.99827 * 197.86244 * 19 17 16 22 22 H 1.48500 * 109.46745 * 90.00170 * 21 19 17 23 23 H 1.48496 * 109.47188 * 210.00142 * 21 19 17 24 24 H 1.48501 * 109.46945 * 330.00540 * 21 19 17 25 25 C 1.40896 * 119.78986 * 359.74192 * 16 15 14 26 26 C 1.36312 * 119.89270 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46831 * 300.00159 * 1 2 3 28 28 H 1.08998 * 109.47067 * 60.00437 * 1 2 3 29 29 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46831 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46846 * 120.00068 * 2 1 3 32 32 H 0.96697 * 113.99710 * 60.00639 * 5 3 2 33 33 H 1.08999 * 109.46638 * 64.99803 * 8 6 3 34 34 H 1.08996 * 109.47270 * 304.99684 * 8 6 3 35 35 H 1.08996 * 109.47284 * 300.00158 * 9 8 6 36 36 H 1.08995 * 109.46889 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46594 * 60.00266 * 9 8 6 38 38 H 0.97000 * 119.99885 * 334.99928 * 10 6 3 39 39 H 1.07995 * 119.94899 * 0.02686 * 14 13 11 40 40 H 1.08004 * 120.04777 * 180.23429 * 15 14 13 41 41 H 0.96994 * 119.99950 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.04776 * 179.97438 * 25 16 15 43 43 H 1.08004 * 119.94622 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 1 3.8498 1.0376 -1.0961 8 6 4.0852 2.8777 -0.0007 9 6 5.5946 2.8959 -0.2502 10 7 4.1435 0.6201 0.9382 11 6 5.3565 0.0571 0.7702 12 8 5.9703 0.2328 -0.2645 13 6 5.9399 -0.7730 1.8428 14 6 5.2337 -0.9691 3.0358 15 6 5.7663 -1.7387 4.0270 16 6 7.0340 -2.3284 3.8537 17 6 7.5921 -3.1209 4.8791 18 1 8.6632 -3.2419 4.9459 19 6 6.7559 -3.7516 5.8115 20 7 5.4851 -3.9057 5.5500 21 14 7.4588 -4.3716 7.4274 22 1 7.3728 -3.2974 8.4491 23 1 6.6829 -5.5525 7.8841 24 1 8.8796 -4.7576 7.2334 25 6 7.7431 -2.1237 2.6535 26 6 7.1999 -1.3573 1.6658 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0142 1.6543 2.0138 33 1 3.8780 3.2533 1.0013 34 1 3.5878 3.5103 -0.7359 35 1 6.0921 2.2634 0.4850 36 1 5.9652 3.9171 -0.1616 37 1 5.8017 2.5203 -1.2522 38 1 3.6537 0.4797 1.7636 39 1 4.2638 -0.5134 3.1693 40 1 5.2192 -1.8925 4.9454 41 1 4.9066 -4.3416 6.1951 42 1 8.7155 -2.5734 2.5165 43 1 7.7429 -1.1995 0.7456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456698796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:09 Heat of formation + Delta-G solvation = -94.502297 kcal Electronic energy + Delta-G solvation = -23489.756398 eV Core-core repulsion = 20112.502511 eV Total energy + Delta-G solvation = -3377.253888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87454 -38.09396 -37.00232 -34.47059 -33.90102 -32.82201 -32.10790 -30.05113 -29.47996 -28.09571 -25.86662 -24.10021 -22.34190 -21.33194 -21.07246 -20.44962 -19.71978 -17.57399 -17.31536 -16.50584 -15.85154 -15.43458 -15.05517 -14.83325 -14.75884 -14.05060 -13.98168 -13.34186 -13.22885 -12.95595 -12.80253 -12.56608 -12.39262 -12.15649 -12.02879 -11.92264 -11.53217 -11.42713 -11.31843 -11.19736 -11.04373 -10.98572 -10.82191 -10.68890 -10.53920 -10.06123 -9.90659 -9.59277 -9.38738 -8.96130 -8.54900 -7.76028 -7.57773 -7.06970 -4.63684 2.20135 2.89617 2.93753 2.96082 3.00007 3.69122 3.71598 3.84223 4.21906 4.52758 4.58856 4.84116 4.96062 5.27874 5.31362 5.39310 5.51455 5.54304 5.66170 5.67151 5.80216 5.91801 5.98167 6.03277 6.08500 6.14628 6.19117 6.20031 6.28252 6.44531 6.72319 6.74440 6.79557 6.90936 7.02638 7.09911 7.39834 7.49102 7.61197 7.75003 7.82586 8.03799 8.18354 8.36473 8.59901 8.71799 9.05934 9.85056 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003913 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.069609 B = 7153.505281 C = 8053.052453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.101 3.899 4 H 0.107 0.893 5 O -0.557 6.557 6 C 0.115 3.885 7 H 0.091 0.909 8 C -0.125 4.125 9 C -0.145 4.145 10 N -0.735 5.735 11 C 0.574 3.426 12 O -0.567 6.567 13 C -0.285 4.285 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.772 5.772 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.022 4.022 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.372 0.628 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.391 0.609 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 6.506 -4.065 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.041 3.959 4 H 0.124 0.876 5 O -0.362 6.362 6 C 0.009 3.991 7 H 0.109 0.891 8 C -0.163 4.163 9 C -0.202 4.202 10 N -0.389 5.389 11 C 0.370 3.630 12 O -0.449 6.449 13 C -0.290 4.290 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.103 0.897 19 C -0.146 4.146 20 N -0.395 5.395 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.258 4.258 26 C -0.041 4.041 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.226 0.774 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.773 6.915 -5.134 11.601 hybrid contribution 0.225 -0.890 1.473 1.735 sum -7.548 6.025 -3.661 10.328 Atomic orbital electron populations 1.21703 0.95233 1.01463 1.02056 1.22210 0.96699 0.96946 1.03581 1.22315 0.92346 0.93174 0.88051 0.87563 1.86563 1.76808 1.57170 1.15645 1.21638 0.92420 0.91594 0.93414 0.89127 1.21811 0.96874 0.95623 1.02038 1.21810 0.95260 1.00136 1.02986 1.45900 1.20596 1.53145 1.19301 1.18490 0.79578 0.77914 0.87067 1.90646 1.61251 1.63238 1.29760 1.18911 0.99652 1.13696 0.96729 1.20441 0.96721 0.97523 0.93539 1.20973 0.98416 1.00804 0.99523 1.17785 0.91202 0.88004 0.90478 1.19869 0.95167 1.23872 1.08146 0.89696 1.26095 0.94481 0.94213 0.99853 1.69739 1.05713 1.29443 1.34599 0.86208 0.80440 0.78869 0.80774 1.18903 1.20000 1.18261 1.20720 1.01975 1.08049 0.95100 1.20357 0.93178 0.93430 0.97140 0.92152 0.92991 0.92843 0.90934 0.91103 0.78073 0.91615 0.91983 0.91753 0.94208 0.92528 0.77379 0.89566 0.86239 0.90219 0.88441 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.81 37.16 0.36 -1.05 16 2 C -0.16 -1.68 5.30 -26.73 -0.14 -1.82 16 3 C 0.10 1.09 2.83 -26.73 -0.08 1.01 16 4 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 5 O -0.56 -6.14 12.10 -35.23 -0.43 -6.56 16 6 C 0.11 1.51 2.16 -67.93 -0.15 1.37 16 7 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 8 C -0.12 -1.63 5.33 -26.73 -0.14 -1.77 16 9 C -0.14 -2.21 8.51 37.16 0.32 -1.89 16 10 N -0.74 -11.14 4.26 -54.81 -0.23 -11.37 16 11 C 0.57 11.34 6.33 -12.42 -0.08 11.26 16 12 O -0.57 -12.44 13.46 5.29 0.07 -12.37 16 13 C -0.29 -6.24 5.89 -104.73 -0.62 -6.86 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 15 C -0.18 -4.24 8.63 -39.27 -0.34 -4.58 16 16 C 0.13 3.21 5.58 -106.80 -0.60 2.62 16 17 C -0.44 -10.86 9.04 -37.75 -0.34 -11.21 16 18 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 19 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 20 N -0.77 -18.16 10.95 55.56 0.61 -17.55 16 21 Si 0.91 17.03 29.60 -169.99 -5.03 12.00 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 25 C -0.24 -5.68 9.73 -39.27 -0.38 -6.07 16 26 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.82 7.31 -51.93 -0.38 0.44 16 32 H 0.37 3.42 7.81 45.56 0.36 3.78 16 33 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.17 5.64 -51.93 -0.29 0.87 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 38 H 0.39 5.26 4.93 -40.82 -0.20 5.06 16 39 H 0.09 1.52 6.37 -52.49 -0.33 1.19 16 40 H 0.12 2.89 6.16 -52.48 -0.32 2.57 16 41 H 0.29 6.06 8.29 -40.82 -0.34 5.73 16 42 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 43 H 0.10 2.24 7.63 -52.48 -0.40 1.84 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -27.15 344.89 -8.53 -35.67 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.69 Total: 14.94 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.02 Total: -19.95 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.38 Total: -28.93 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.35 Total: -18.93 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.15 -8.53 -35.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.828 kcal (2) G-P(sol) polarization free energy of solvation -27.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds