Wall clock time and date at job start Tue Mar 31 2020 07:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09000 * 109.46834 * 304.99820 * 3 2 1 5 5 O 1.42898 * 109.47199 * 64.99622 * 3 2 1 6 6 C 1.53001 * 109.46831 * 185.00227 * 3 2 1 7 7 H 1.08997 * 109.46960 * 64.99784 * 6 3 2 8 8 C 1.53005 * 109.46840 * 184.99826 * 6 3 2 9 9 C 1.53004 * 109.46921 * 184.99518 * 8 6 3 10 10 N 1.46500 * 109.46759 * 304.99678 * 6 3 2 11 11 C 1.34773 * 119.99626 * 155.00465 * 10 6 3 12 12 O 1.21589 * 120.00381 * 359.97438 * 11 10 6 13 13 C 1.47645 * 119.99748 * 179.97438 * 11 10 6 14 14 C 1.40013 * 119.89472 * 359.72005 * 13 11 10 15 15 C 1.36324 * 120.10190 * 179.76170 * 14 13 11 16 16 C 1.40885 * 119.89543 * 0.51501 * 15 14 13 17 17 C 1.41107 * 120.10692 * 179.71650 * 16 15 14 18 18 H 1.07996 * 120.00430 * 204.65139 * 17 16 15 19 19 C 1.40228 * 119.99414 * 24.65538 * 17 16 15 20 20 N 1.30649 * 120.00334 * 17.86646 * 19 17 16 21 21 Si 1.86804 * 119.99827 * 197.86244 * 19 17 16 22 22 H 1.48500 * 109.46745 * 90.00170 * 21 19 17 23 23 H 1.48496 * 109.47188 * 210.00142 * 21 19 17 24 24 H 1.48501 * 109.46945 * 330.00540 * 21 19 17 25 25 C 1.40896 * 119.78986 * 359.74192 * 16 15 14 26 26 C 1.36312 * 119.89270 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46831 * 300.00159 * 1 2 3 28 28 H 1.08998 * 109.47067 * 60.00437 * 1 2 3 29 29 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46831 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46846 * 120.00068 * 2 1 3 32 32 H 0.96697 * 113.99710 * 60.00639 * 5 3 2 33 33 H 1.08999 * 109.46638 * 64.99803 * 8 6 3 34 34 H 1.08996 * 109.47270 * 304.99684 * 8 6 3 35 35 H 1.08996 * 109.47284 * 300.00158 * 9 8 6 36 36 H 1.08995 * 109.46889 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46594 * 60.00266 * 9 8 6 38 38 H 0.97000 * 119.99885 * 334.99928 * 10 6 3 39 39 H 1.07995 * 119.94899 * 0.02686 * 14 13 11 40 40 H 1.08004 * 120.04777 * 180.23429 * 15 14 13 41 41 H 0.96994 * 119.99950 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.04776 * 179.97438 * 25 16 15 43 43 H 1.08004 * 119.94622 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 1 3.8498 1.0376 -1.0961 8 6 4.0852 2.8777 -0.0007 9 6 5.5946 2.8959 -0.2502 10 7 4.1435 0.6201 0.9382 11 6 5.3565 0.0571 0.7702 12 8 5.9703 0.2328 -0.2645 13 6 5.9399 -0.7730 1.8428 14 6 5.2337 -0.9691 3.0358 15 6 5.7663 -1.7387 4.0270 16 6 7.0340 -2.3284 3.8537 17 6 7.5921 -3.1209 4.8791 18 1 8.6632 -3.2419 4.9459 19 6 6.7559 -3.7516 5.8115 20 7 5.4851 -3.9057 5.5500 21 14 7.4588 -4.3716 7.4274 22 1 7.3728 -3.2974 8.4491 23 1 6.6829 -5.5525 7.8841 24 1 8.8796 -4.7576 7.2334 25 6 7.7431 -2.1237 2.6535 26 6 7.1999 -1.3573 1.6658 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0142 1.6543 2.0138 33 1 3.8780 3.2533 1.0013 34 1 3.5878 3.5103 -0.7359 35 1 6.0921 2.2634 0.4850 36 1 5.9652 3.9171 -0.1616 37 1 5.8017 2.5203 -1.2522 38 1 3.6537 0.4797 1.7636 39 1 4.2638 -0.5134 3.1693 40 1 5.2192 -1.8925 4.9454 41 1 4.9066 -4.3416 6.1951 42 1 8.7155 -2.5734 2.5165 43 1 7.7429 -1.1995 0.7456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456698796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:09 Heat of formation + Delta-G solvation = -110.326286 kcal Electronic energy + Delta-G solvation = -23490.442578 eV Core-core repulsion = 20112.502511 eV Total energy + Delta-G solvation = -3377.940067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23223 -39.49109 -38.54394 -35.73321 -35.59692 -33.67708 -33.47821 -31.72237 -31.28247 -29.22266 -27.55271 -25.11557 -23.93694 -22.81891 -22.25336 -21.80938 -21.16739 -19.35990 -18.71040 -17.72434 -17.23694 -16.76872 -16.24906 -16.07783 -15.87273 -15.70567 -15.43248 -14.96536 -14.52641 -14.25657 -14.22073 -13.93020 -13.67558 -13.55080 -13.29737 -13.16540 -13.00448 -12.85790 -12.63703 -12.49973 -12.38713 -12.30390 -11.88092 -11.83825 -11.75797 -11.63370 -11.35763 -11.11990 -10.86877 -10.58795 -9.89798 -9.56257 -9.39102 -8.79067 -6.47847 0.47234 1.15621 1.38978 1.43697 1.52861 2.15268 2.19550 2.37662 2.80899 3.34919 3.63553 3.70485 3.91307 4.09002 4.23601 4.26182 4.30992 4.31747 4.45272 4.46618 4.65575 4.69817 4.80713 4.86776 4.92720 5.00370 5.03517 5.05490 5.14053 5.17255 5.22491 5.28290 5.32326 5.40955 5.49637 5.58728 5.67678 5.83813 5.95497 6.00065 6.24099 6.54816 6.69101 6.74002 6.78184 6.90056 7.52079 8.16169 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003913 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.069609 B = 7153.505281 C = 8053.052453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 C 0.114 3.886 4 H 0.124 0.876 5 O -0.560 6.560 6 C 0.115 3.885 7 H 0.076 0.924 8 C -0.120 4.120 9 C -0.141 4.141 10 N -0.717 5.717 11 C 0.577 3.423 12 O -0.591 6.591 13 C -0.291 4.291 14 C -0.053 4.053 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.477 4.477 18 H 0.083 0.917 19 C 0.040 3.960 20 N -0.798 5.798 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.255 4.255 26 C -0.034 4.034 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.380 0.620 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.297 0.703 42 H 0.100 0.900 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 7.396 -3.583 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.194 4.194 3 C 0.055 3.945 4 H 0.142 0.858 5 O -0.367 6.367 6 C 0.010 3.990 7 H 0.094 0.906 8 C -0.158 4.158 9 C -0.198 4.198 10 N -0.370 5.370 11 C 0.370 3.630 12 O -0.475 6.475 13 C -0.296 4.296 14 C -0.072 4.072 15 C -0.217 4.217 16 C 0.098 3.902 17 C -0.504 4.504 18 H 0.101 0.899 19 C -0.179 4.179 20 N -0.422 5.422 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.274 4.274 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.611 7.822 -4.653 13.236 hybrid contribution 0.745 -1.100 1.212 1.799 sum -8.867 6.721 -3.440 11.646 Atomic orbital electron populations 1.21668 0.94126 1.01751 1.02520 1.22196 0.97642 0.96715 1.02840 1.22233 0.90101 0.93477 0.88734 0.85850 1.86563 1.76769 1.57361 1.15961 1.21809 0.94158 0.91182 0.91853 0.90550 1.21787 0.95291 0.95680 1.03034 1.21742 0.96824 1.00201 1.01077 1.45700 1.18980 1.52063 1.20230 1.18199 0.80743 0.77959 0.86090 1.90637 1.62284 1.64095 1.30465 1.19245 0.99333 1.13345 0.97640 1.20719 0.97877 0.96290 0.92334 1.21014 0.98477 1.02059 1.00145 1.18125 0.92164 0.88824 0.91072 1.20106 0.95494 1.25253 1.09592 0.89923 1.26875 0.94615 0.93799 1.02594 1.69754 1.06782 1.29736 1.35917 0.85136 0.79550 0.78556 0.76193 1.18294 1.18894 1.18274 1.20845 1.02404 1.08808 0.95348 1.20503 0.94051 0.93739 0.97025 0.92170 0.92010 0.92717 0.91566 0.92017 0.77136 0.91137 0.89617 0.94959 0.92689 0.93861 0.76156 0.85782 0.86882 0.89203 0.88154 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.81 71.98 0.71 -1.68 16 2 C -0.16 -3.00 5.30 30.60 0.16 -2.84 16 3 C 0.11 2.13 2.83 30.59 0.09 2.21 16 4 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 5 O -0.56 -10.48 12.10 -148.98 -1.80 -12.28 16 6 C 0.11 2.79 2.16 44.99 0.10 2.89 16 7 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 8 C -0.12 -2.83 5.33 30.60 0.16 -2.66 16 9 C -0.14 -4.16 8.51 71.98 0.61 -3.54 16 10 N -0.72 -20.58 4.26 -445.58 -1.90 -22.48 16 11 C 0.58 22.52 6.33 86.73 0.55 23.07 16 12 O -0.59 -26.05 13.46 -4.00 -0.05 -26.10 16 13 C -0.29 -12.76 5.89 -19.93 -0.12 -12.88 16 14 C -0.05 -2.24 9.47 22.25 0.21 -2.02 16 15 C -0.20 -9.54 8.63 22.47 0.19 -9.35 16 16 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 17 C -0.48 -24.03 9.04 23.46 0.21 -23.82 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 19 C 0.04 1.85 5.14 85.35 0.44 2.29 16 20 N -0.80 -37.68 10.95 21.87 0.24 -37.44 16 21 Si 0.99 34.57 29.60 68.60 2.03 36.60 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 24 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 25 C -0.25 -12.57 9.73 22.47 0.22 -12.35 16 26 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 27 H 0.06 1.01 7.82 -2.39 -0.02 0.99 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.29 7.31 -2.39 -0.02 1.28 16 32 H 0.38 5.76 7.81 -74.06 -0.58 5.18 16 33 H 0.07 1.64 7.73 -2.39 -0.02 1.62 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.15 5.64 -2.39 -0.01 1.13 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 38 H 0.40 9.86 4.93 -92.71 -0.46 9.40 16 39 H 0.12 4.11 6.37 -2.91 -0.02 4.09 16 40 H 0.11 5.54 6.16 -2.91 -0.02 5.52 16 41 H 0.30 12.42 8.29 -92.71 -0.77 11.65 16 42 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.10 4.66 7.63 -2.91 -0.02 4.64 16 Total: -1.00 -59.43 344.89 2.13 -57.30 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -0.01 Total: 41.38 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.63 Total: -36.99 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.66 Total: -59.91 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.86 Total: -38.38 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Total: -59.43 2.13 -57.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456698796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.027 kcal (2) G-P(sol) polarization free energy of solvation -59.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds