Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 C 1.53000 * 109.47170 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47282 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00406 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47083 * 29.99985 * 6 5 4 8 8 C 1.53003 * 109.46896 * 270.00273 * 6 5 4 9 9 C 1.50697 * 109.47242 * 149.99981 * 6 5 4 10 10 O 1.21280 * 120.00285 * 5.00122 * 9 6 5 11 11 N 1.34780 * 119.99773 * 185.00124 * 9 6 5 12 12 C 1.39939 * 120.00092 * 174.89619 * 11 9 6 13 13 C 1.39288 * 119.94263 * 325.54762 * 12 11 9 14 14 C 1.38492 * 120.42293 * 179.76255 * 13 12 11 15 15 C 1.37680 * 120.32558 * 0.51223 * 14 13 12 16 16 C 1.40741 * 119.88222 * 359.74394 * 15 14 13 17 17 C 1.41408 * 120.21113 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99982 * 25.13233 * 17 16 15 19 19 C 1.39929 * 120.00154 * 205.13059 * 17 16 15 20 20 N 1.30826 * 120.00100 * 16.78889 * 19 17 16 21 21 Si 1.86808 * 120.00004 * 196.78834 * 19 17 16 22 22 H 1.48502 * 109.46999 * 90.00074 * 21 19 17 23 23 H 1.48497 * 109.46945 * 209.99830 * 21 19 17 24 24 H 1.48494 * 109.46859 * 330.00199 * 21 19 17 25 25 C 1.38237 * 119.94950 * 145.81960 * 12 11 9 26 26 H 1.08998 * 109.47165 * 59.99498 * 1 2 3 27 27 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47138 * 299.99821 * 1 2 3 29 29 H 1.09003 * 109.46601 * 240.00724 * 2 1 3 30 30 H 1.08998 * 109.47165 * 120.00502 * 2 1 3 31 31 H 1.09003 * 109.46944 * 60.00060 * 3 2 1 32 32 H 1.08998 * 109.47486 * 300.00305 * 3 2 1 33 33 H 1.09003 * 109.46601 * 60.00724 * 4 3 2 34 34 H 1.08998 * 109.47165 * 300.00502 * 4 3 2 35 35 H 1.08999 * 109.46930 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47260 * 59.99758 * 8 6 5 37 37 H 1.08995 * 109.46828 * 299.99531 * 8 6 5 38 38 H 0.96995 * 120.00059 * 354.89170 * 11 9 6 39 39 H 1.07994 * 119.78902 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.83785 * 180.23489 * 14 13 12 41 41 H 1.07994 * 120.06058 * 179.76330 * 15 14 13 42 42 H 0.97002 * 120.00119 * 179.97438 * 20 19 17 43 43 H 1.08012 * 120.15958 * 359.95749 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9026 -0.0012 7 1 5.9030 2.0445 -0.5160 8 6 5.9805 2.9418 1.4410 9 6 5.8738 4.1694 -0.7109 10 8 5.0251 4.9481 -1.0906 11 7 7.1775 4.4370 -0.9238 12 6 7.5481 5.5578 -1.6754 13 6 6.7572 5.9701 -2.7452 14 6 7.1119 7.0807 -3.4926 15 6 8.2570 7.7838 -3.1924 16 6 9.0688 7.3758 -2.1176 17 6 10.2461 8.0931 -1.8028 18 1 10.3332 9.1345 -2.0758 19 6 11.2982 7.4538 -1.1377 20 7 11.3478 6.1472 -1.0958 21 14 12.6322 8.4661 -0.3097 22 1 12.2418 8.7442 1.0959 23 1 13.9103 7.7104 -0.3281 24 1 12.8046 9.7484 -1.0385 25 6 8.7016 6.2507 -1.3584 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8910 34 1 3.9337 0.9285 0.8890 35 1 7.0671 3.0274 1.4401 36 1 5.6890 2.0255 1.9544 37 1 5.5484 3.7999 1.9558 38 1 7.8589 3.8528 -0.5560 39 1 5.8592 5.4226 -2.9908 40 1 6.4897 7.3942 -4.3178 41 1 8.5316 8.6470 -3.7805 42 1 12.0773 5.7040 -0.6350 43 1 9.3175 5.9295 -0.5312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456725065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = -99.690384 kcal Electronic energy + Delta-G solvation = -22541.687324 eV Core-core repulsion = 19164.208464 eV Total energy + Delta-G solvation = -3377.478860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42611 -39.51720 -38.57206 -36.03871 -35.92309 -35.15056 -32.73814 -31.45503 -30.13305 -29.64183 -27.19181 -25.72006 -24.18261 -23.13233 -22.65278 -22.03218 -21.12956 -19.28724 -18.62602 -17.96003 -17.38807 -16.92948 -16.58096 -16.52214 -16.19067 -15.83541 -15.33138 -14.89394 -14.73899 -14.49676 -14.23068 -14.17524 -13.82905 -13.47058 -13.32453 -13.16685 -13.05872 -12.83757 -12.71328 -12.58405 -12.35139 -12.26770 -11.95709 -11.86308 -11.78769 -11.58921 -11.53753 -11.18157 -10.97926 -10.81825 -10.41091 -9.34702 -8.87818 -8.55689 -6.35748 0.78815 1.02870 1.41206 1.50244 1.53326 1.70065 1.87009 2.23030 2.74855 2.86928 3.58834 3.72144 3.86182 3.94075 4.02175 4.12519 4.20750 4.41222 4.42941 4.44178 4.64204 4.69242 4.70054 4.75455 4.83706 4.90684 4.95158 5.03854 5.09543 5.13847 5.15877 5.20196 5.24022 5.34899 5.35433 5.44593 5.76415 5.82824 6.00677 6.07785 6.11995 6.33917 6.57192 6.71590 6.93329 6.96925 7.24369 8.34534 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.002907 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.673416 B = 9630.443689 C =10368.791166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.052 3.948 5 O -0.390 6.390 6 C 0.082 3.918 7 H 0.118 0.882 8 C -0.165 4.165 9 C 0.501 3.499 10 O -0.555 6.555 11 N -0.655 5.655 12 C 0.151 3.849 13 C -0.243 4.243 14 C -0.085 4.085 15 C -0.248 4.248 16 C 0.091 3.909 17 C -0.497 4.497 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.200 4.200 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.418 0.582 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.290 0.710 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -14.893 6.556 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.157 4.157 4 C -0.023 4.023 5 O -0.309 6.309 6 C 0.021 3.979 7 H 0.136 0.864 8 C -0.223 4.223 9 C 0.289 3.711 10 O -0.432 6.432 11 N -0.302 5.302 12 C 0.058 3.942 13 C -0.264 4.264 14 C -0.104 4.104 15 C -0.268 4.268 16 C 0.088 3.912 17 C -0.526 4.526 18 H 0.094 0.906 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.186 1.186 25 C -0.222 4.222 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.256 0.744 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.747 -14.451 6.372 18.559 hybrid contribution 0.977 0.271 0.160 1.026 sum -8.771 -14.180 6.532 17.907 Atomic orbital electron populations 1.21772 0.95179 1.02312 1.01833 1.21419 0.96455 0.94447 1.03019 1.21561 0.93068 0.98505 1.02526 1.22891 0.95665 0.82137 1.01643 1.88018 1.19038 1.28654 1.95161 1.21912 0.83624 0.94515 0.97862 0.86405 1.22246 1.02512 1.04314 0.93221 1.21375 0.81912 0.88660 0.79135 1.90689 1.51188 1.50003 1.51334 1.43371 1.07721 1.26669 1.52426 1.17655 0.95406 0.89187 0.91940 1.20459 1.02640 1.02985 1.00353 1.20726 0.96114 0.94936 0.98583 1.21214 0.99579 1.04541 1.01453 1.17794 0.92364 0.91532 0.89490 1.19785 0.99629 0.98335 1.34854 0.90618 1.26694 1.00945 0.96042 0.94014 1.69836 1.31452 1.10421 1.32847 0.85204 0.76563 0.78966 0.78969 1.18819 1.18995 1.18573 1.21031 0.97850 1.00098 1.03195 0.93160 0.91459 0.92666 0.91304 0.90574 0.91657 0.92731 0.92343 0.90785 0.89453 0.88282 0.92917 0.74443 0.88366 0.86365 0.87989 0.89954 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.47 5.93 30.59 0.18 -1.29 16 3 C -0.12 -2.17 5.58 30.59 0.17 -1.99 16 4 C 0.05 1.00 5.75 71.98 0.41 1.41 16 5 O -0.39 -11.16 9.53 -129.99 -1.24 -12.40 16 6 C 0.08 2.11 3.13 29.85 0.09 2.20 16 7 H 0.12 2.23 7.79 -2.39 -0.02 2.22 16 8 C -0.17 -3.31 9.47 71.98 0.68 -2.63 16 9 C 0.50 18.78 6.91 87.66 0.61 19.39 16 10 O -0.56 -26.48 14.25 15.96 0.23 -26.25 16 11 N -0.66 -24.90 5.30 -303.66 -1.61 -26.51 16 12 C 0.15 7.29 6.25 38.10 0.24 7.53 16 13 C -0.24 -12.08 8.66 22.58 0.20 -11.89 16 14 C -0.08 -4.11 10.02 22.20 0.22 -3.89 16 15 C -0.25 -12.77 9.79 22.75 0.22 -12.55 16 16 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 17 C -0.50 -26.71 9.05 23.46 0.21 -26.50 16 18 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 19 C 0.04 1.89 5.16 85.25 0.44 2.32 16 20 N -0.82 -40.75 10.94 21.82 0.24 -40.52 16 21 Si 0.98 37.31 29.59 68.60 2.03 39.34 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 C -0.20 -10.46 8.60 22.85 0.20 -10.27 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 0.99 8.09 -2.39 -0.02 0.98 16 34 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 35 H 0.09 1.52 7.77 -2.39 -0.02 1.50 16 36 H 0.10 1.38 7.87 -2.39 -0.02 1.36 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 12.78 8.43 -92.71 -0.78 12.00 16 39 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 40 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 43 H 0.12 6.13 6.17 -2.90 -0.02 6.11 16 Total: -1.00 -69.06 358.60 4.33 -64.73 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.21 Total: 36.02 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 4.47 Total: -34.42 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -1.37 Total: -67.03 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.01 Total: -38.65 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -69.06 4.33 -64.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456725065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.959 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds