Wall clock time and date at job start Tue Mar 31 2020 07:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47623 * 2 1 4 4 H 1.09010 * 109.46963 * 54.99646 * 3 2 1 5 5 C 1.53004 * 109.46855 * 295.00256 * 3 2 1 6 6 C 1.52995 * 109.47628 * 174.99590 * 3 2 1 7 7 H 1.09003 * 109.46688 * 66.13786 * 6 3 2 8 8 O 1.42897 * 109.47395 * 306.13945 * 6 3 2 9 9 C 1.42899 * 114.00110 * 149.99839 * 8 6 3 10 10 C 1.50698 * 109.47248 * 186.13657 * 6 3 2 11 11 O 1.21285 * 120.00129 * 108.83055 * 10 6 3 12 12 N 1.34779 * 120.00083 * 288.55201 * 10 6 3 13 13 C 1.39936 * 119.99919 * 180.14310 * 12 10 6 14 14 C 1.39291 * 119.94844 * 31.43508 * 13 12 10 15 15 C 1.38488 * 120.43097 * 179.76036 * 14 13 12 16 16 C 1.37685 * 120.31863 * 0.51368 * 15 14 13 17 17 C 1.40738 * 119.88427 * 359.73954 * 16 15 14 18 18 C 1.41414 * 120.21117 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99723 * 30.96991 * 18 17 16 20 20 C 1.39933 * 120.00455 * 210.97305 * 18 17 16 21 21 N 1.30827 * 119.99423 * 13.67984 * 20 18 17 22 22 Si 1.86797 * 120.00313 * 193.67378 * 20 18 17 23 23 H 1.48499 * 109.46899 * 89.99861 * 22 20 18 24 24 H 1.48496 * 109.47193 * 210.00211 * 22 20 18 25 25 H 1.48505 * 109.46992 * 330.00304 * 22 20 18 26 26 C 1.38243 * 119.94786 * 211.70251 * 13 12 10 27 27 H 1.09000 * 109.47386 * 299.99999 * 1 2 3 28 28 H 1.09008 * 109.46982 * 60.00079 * 1 2 3 29 29 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47386 * 240.00001 * 2 1 3 31 31 H 1.09004 * 109.47297 * 120.00312 * 2 1 3 32 32 H 1.08998 * 109.47126 * 298.31109 * 5 3 2 33 33 H 1.09003 * 109.47174 * 58.31805 * 5 3 2 34 34 H 1.09002 * 109.46369 * 178.31330 * 5 3 2 35 35 H 1.08991 * 109.47192 * 59.99950 * 9 8 6 36 36 H 1.09001 * 109.47173 * 180.02562 * 9 8 6 37 37 H 1.09009 * 109.47149 * 299.99774 * 9 8 6 38 38 H 0.96998 * 119.99935 * 0.14798 * 12 10 6 39 39 H 1.08000 * 119.78434 * 0.02562 * 14 13 12 40 40 H 1.07990 * 119.84054 * 180.25635 * 15 14 13 41 41 H 1.08002 * 120.05780 * 179.77048 * 16 15 14 42 42 H 0.96999 * 119.99850 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.16096 * 359.96057 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 1 4.0036 1.0018 -0.7685 8 8 3.9492 0.6823 1.2719 9 6 5.2240 0.0489 1.1480 10 6 4.0547 2.8614 0.2773 11 8 4.4898 3.2419 1.3436 12 7 4.0145 3.7043 -0.7735 13 6 4.4721 5.0193 -0.6336 14 6 5.5075 5.3045 0.2535 15 6 5.9715 6.6015 0.3962 16 6 5.4067 7.6257 -0.3302 17 6 4.3564 7.3534 -1.2265 18 6 3.7716 8.4000 -1.9765 19 1 4.3675 9.2510 -2.2718 20 6 2.4209 8.3331 -2.3362 21 7 1.6350 7.4562 -1.7662 22 14 1.7400 9.4960 -3.6298 23 1 1.8718 8.8749 -4.9722 24 1 0.3074 9.7661 -3.3477 25 1 2.4999 10.7715 -3.5978 26 6 3.8923 6.0341 -1.3719 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0942 1.6053 -2.1474 33 1 0.5505 2.0988 -1.4113 34 1 1.9727 3.1629 -1.2946 35 1 5.9924 0.8061 0.9928 36 1 5.4424 -0.5096 2.0582 37 1 5.2096 -0.6337 0.2981 38 1 3.6682 3.3995 -1.6268 39 1 5.9541 4.5084 0.8306 40 1 6.7775 6.8113 1.0837 41 1 5.7694 8.6362 -0.2129 42 1 0.6988 7.4095 -2.0157 43 1 3.0870 5.8145 -2.0573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456746275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:02 Heat of formation + Delta-G solvation = -71.981765 kcal Electronic energy + Delta-G solvation = -23703.942293 eV Core-core repulsion = 20327.664968 eV Total energy + Delta-G solvation = -3376.277324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24587 -38.09050 -36.77544 -35.90448 -34.18268 -33.25315 -30.69799 -29.52267 -28.37167 -27.68116 -25.71457 -25.22926 -24.16456 -21.41573 -21.06710 -20.16427 -19.64529 -17.48131 -17.33248 -16.67524 -15.92998 -15.43690 -14.96095 -14.80740 -14.70093 -14.43000 -14.12512 -13.69675 -13.57112 -13.03113 -12.83472 -12.63621 -12.46312 -12.35116 -11.93297 -11.78531 -11.74050 -11.45664 -11.25987 -11.12243 -10.85061 -10.76936 -10.70481 -10.61778 -10.46875 -10.26988 -9.91714 -9.87745 -9.35328 -9.04251 -8.70934 -7.32980 -6.94550 -6.68670 -4.37414 2.55948 2.85569 3.08271 3.11811 3.16931 3.26060 3.47581 3.86198 3.96021 4.64353 4.71181 4.73573 4.93317 5.02393 5.11445 5.27171 5.34285 5.40221 5.48403 5.53365 5.61666 5.65856 5.66182 5.87160 5.91798 6.04426 6.08045 6.26502 6.26828 6.37021 6.65460 6.68031 6.84146 6.99338 7.06165 7.08120 7.24877 7.60878 7.69220 7.93237 8.02457 8.16328 8.32306 8.56744 8.76193 8.90103 8.96030 10.26102 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.004667 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.021303 B = 5997.517142 C = 7460.246795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.083 4.083 4 H 0.084 0.916 5 C -0.167 4.167 6 C 0.080 3.920 7 H 0.081 0.919 8 O -0.355 6.355 9 C 0.029 3.971 10 C 0.482 3.518 11 O -0.509 6.509 12 N -0.662 5.662 13 C 0.141 3.859 14 C -0.225 4.225 15 C -0.090 4.090 16 C -0.222 4.222 17 C 0.123 3.877 18 C -0.470 4.470 19 H 0.078 0.922 20 C 0.077 3.923 21 N -0.804 5.804 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.176 4.176 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.400 0.600 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.278 0.722 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 -14.374 -1.709 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.102 4.102 4 H 0.103 0.897 5 C -0.225 4.225 6 C 0.019 3.981 7 H 0.099 0.901 8 O -0.272 6.272 9 C -0.068 4.068 10 C 0.268 3.732 11 O -0.383 6.383 12 N -0.309 5.309 13 C 0.049 3.951 14 C -0.246 4.246 15 C -0.108 4.108 16 C -0.242 4.242 17 C 0.120 3.880 18 C -0.501 4.501 19 H 0.096 0.904 20 C -0.140 4.140 21 N -0.430 5.430 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.198 4.198 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.237 0.763 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.080 -14.251 -0.738 14.311 hybrid contribution -0.407 0.456 -1.132 1.287 sum -1.487 -13.795 -1.871 14.001 Atomic orbital electron populations 1.21825 0.95722 1.01383 1.02150 1.21475 0.95854 0.95306 1.02423 1.21159 0.91135 0.97912 0.99958 0.89725 1.22169 1.02865 1.01720 0.95717 1.22146 0.96751 0.89294 0.89954 0.90119 1.87963 1.35538 1.65300 1.38391 1.22844 0.85466 0.96465 1.01979 1.21266 0.79475 0.87999 0.84473 1.90695 1.44106 1.76812 1.26685 1.43808 1.62438 1.11424 1.13251 1.17683 0.95262 0.82132 1.00035 1.20485 1.01363 0.96843 1.05869 1.20466 0.98687 0.92983 0.98701 1.21112 1.04003 0.97094 1.02030 1.17347 0.89768 0.91710 0.89133 1.19493 0.94717 1.05257 1.30631 0.90433 1.25831 0.97075 0.95724 0.95329 1.69816 1.06093 1.31957 1.35115 0.86333 0.78239 0.81081 0.81140 1.19443 1.20433 1.18722 1.20957 1.02936 0.91199 1.04707 0.92612 0.92421 0.92914 0.92219 0.90886 0.92276 0.90992 0.90772 0.93712 0.89366 0.94125 0.76309 0.87438 0.89016 0.88808 0.91127 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.15 0.36 -1.06 16 2 C -0.11 -1.15 5.28 -26.74 -0.14 -1.29 16 3 C -0.08 -1.04 2.15 -90.62 -0.19 -1.23 16 4 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 5 C -0.17 -1.95 8.06 37.16 0.30 -1.65 16 6 C 0.08 1.13 2.15 -27.89 -0.06 1.07 16 7 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 8 O -0.36 -5.21 8.89 -54.89 -0.49 -5.69 16 9 C 0.03 0.33 10.81 101.05 1.09 1.42 16 10 C 0.48 9.02 6.76 -10.99 -0.07 8.95 16 11 O -0.51 -11.68 13.87 -14.10 -0.20 -11.87 16 12 N -0.66 -12.52 4.26 -9.91 -0.04 -12.56 16 13 C 0.14 3.30 6.33 -83.76 -0.53 2.77 16 14 C -0.22 -5.43 8.70 -39.10 -0.34 -5.77 16 15 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 16 C -0.22 -5.57 9.79 -38.84 -0.38 -5.96 16 17 C 0.12 3.28 5.51 -106.85 -0.59 2.69 16 18 C -0.47 -12.41 9.04 -37.74 -0.34 -12.75 16 19 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 20 C 0.08 1.91 5.18 -17.35 -0.09 1.82 16 21 N -0.80 -20.63 11.16 55.55 0.62 -20.01 16 22 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.18 -4.46 8.55 -38.68 -0.33 -4.79 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 6.53 -51.92 -0.34 0.17 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.79 7.37 -51.93 -0.38 0.41 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.77 6.49 -51.93 -0.34 0.43 16 34 H 0.07 1.05 5.46 -51.93 -0.28 0.77 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.36 8.09 -51.92 -0.42 -0.06 16 38 H 0.40 6.27 6.65 -40.82 -0.27 6.00 16 39 H 0.11 2.59 6.07 -52.49 -0.32 2.28 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 43 H 0.12 2.96 6.51 -52.49 -0.34 2.62 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -30.86 347.29 -8.07 -38.93 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.45 Total: 10.73 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -1.72 Total: -18.31 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.58 Total: -32.57 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.68 Total: -17.57 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.86 -8.07 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds