Wall clock time and date at job start Tue Mar 31 2020 07:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47623 * 2 1 4 4 H 1.09010 * 109.46963 * 54.99646 * 3 2 1 5 5 C 1.53004 * 109.46855 * 295.00256 * 3 2 1 6 6 C 1.52995 * 109.47628 * 174.99590 * 3 2 1 7 7 H 1.09003 * 109.46688 * 66.13786 * 6 3 2 8 8 O 1.42897 * 109.47395 * 306.13945 * 6 3 2 9 9 C 1.42899 * 114.00110 * 149.99839 * 8 6 3 10 10 C 1.50698 * 109.47248 * 186.13657 * 6 3 2 11 11 O 1.21285 * 120.00129 * 108.83055 * 10 6 3 12 12 N 1.34779 * 120.00083 * 288.55201 * 10 6 3 13 13 C 1.39936 * 119.99919 * 180.14310 * 12 10 6 14 14 C 1.39291 * 119.94844 * 31.43508 * 13 12 10 15 15 C 1.38488 * 120.43097 * 179.76036 * 14 13 12 16 16 C 1.37685 * 120.31863 * 0.51368 * 15 14 13 17 17 C 1.40738 * 119.88427 * 359.73954 * 16 15 14 18 18 C 1.41414 * 120.21117 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99723 * 30.96991 * 18 17 16 20 20 C 1.39933 * 120.00455 * 210.97305 * 18 17 16 21 21 N 1.30827 * 119.99423 * 13.67984 * 20 18 17 22 22 Si 1.86797 * 120.00313 * 193.67378 * 20 18 17 23 23 H 1.48499 * 109.46899 * 89.99861 * 22 20 18 24 24 H 1.48496 * 109.47193 * 210.00211 * 22 20 18 25 25 H 1.48505 * 109.46992 * 330.00304 * 22 20 18 26 26 C 1.38243 * 119.94786 * 211.70251 * 13 12 10 27 27 H 1.09000 * 109.47386 * 299.99999 * 1 2 3 28 28 H 1.09008 * 109.46982 * 60.00079 * 1 2 3 29 29 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47386 * 240.00001 * 2 1 3 31 31 H 1.09004 * 109.47297 * 120.00312 * 2 1 3 32 32 H 1.08998 * 109.47126 * 298.31109 * 5 3 2 33 33 H 1.09003 * 109.47174 * 58.31805 * 5 3 2 34 34 H 1.09002 * 109.46369 * 178.31330 * 5 3 2 35 35 H 1.08991 * 109.47192 * 59.99950 * 9 8 6 36 36 H 1.09001 * 109.47173 * 180.02562 * 9 8 6 37 37 H 1.09009 * 109.47149 * 299.99774 * 9 8 6 38 38 H 0.96998 * 119.99935 * 0.14798 * 12 10 6 39 39 H 1.08000 * 119.78434 * 0.02562 * 14 13 12 40 40 H 1.07990 * 119.84054 * 180.25635 * 15 14 13 41 41 H 1.08002 * 120.05780 * 179.77048 * 16 15 14 42 42 H 0.96999 * 119.99850 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.16096 * 359.96057 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 1 4.0036 1.0018 -0.7685 8 8 3.9492 0.6823 1.2719 9 6 5.2240 0.0489 1.1480 10 6 4.0547 2.8614 0.2773 11 8 4.4898 3.2419 1.3436 12 7 4.0145 3.7043 -0.7735 13 6 4.4721 5.0193 -0.6336 14 6 5.5075 5.3045 0.2535 15 6 5.9715 6.6015 0.3962 16 6 5.4067 7.6257 -0.3302 17 6 4.3564 7.3534 -1.2265 18 6 3.7716 8.4000 -1.9765 19 1 4.3675 9.2510 -2.2718 20 6 2.4209 8.3331 -2.3362 21 7 1.6350 7.4562 -1.7662 22 14 1.7400 9.4960 -3.6298 23 1 1.8718 8.8749 -4.9722 24 1 0.3074 9.7661 -3.3477 25 1 2.4999 10.7715 -3.5978 26 6 3.8923 6.0341 -1.3719 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0942 1.6053 -2.1474 33 1 0.5505 2.0988 -1.4113 34 1 1.9727 3.1629 -1.2946 35 1 5.9924 0.8061 0.9928 36 1 5.4424 -0.5096 2.0582 37 1 5.2096 -0.6337 0.2981 38 1 3.6682 3.3995 -1.6268 39 1 5.9541 4.5084 0.8306 40 1 6.7775 6.8113 1.0837 41 1 5.7694 8.6362 -0.2129 42 1 0.6988 7.4095 -2.0157 43 1 3.0870 5.8145 -2.0573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456746275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:01 Heat of formation + Delta-G solvation = -88.969494 kcal Electronic energy + Delta-G solvation = -23704.678936 eV Core-core repulsion = 20327.664968 eV Total energy + Delta-G solvation = -3377.013967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69662 -39.58431 -38.36981 -36.92997 -35.88796 -35.05926 -31.84523 -31.40349 -29.96164 -28.70236 -27.18087 -26.75660 -25.18043 -23.20447 -22.71587 -21.31197 -21.14449 -19.27754 -18.77034 -17.96684 -17.28437 -16.89854 -16.68539 -16.42665 -15.91104 -15.70302 -15.53610 -14.91500 -14.81787 -14.51199 -14.41951 -14.17189 -13.70772 -13.58048 -13.33173 -13.01227 -12.89870 -12.80688 -12.66647 -12.56903 -12.39180 -12.23846 -11.89951 -11.75655 -11.72230 -11.66379 -11.45689 -11.37543 -11.16162 -10.79866 -10.23675 -9.29379 -8.79947 -8.56609 -6.37441 0.78073 1.02042 1.41312 1.49391 1.53916 1.66860 2.07819 2.24268 2.72333 2.78196 3.53626 3.70632 3.73701 3.79776 4.12821 4.14547 4.41199 4.43302 4.49332 4.56401 4.59511 4.69878 4.71685 4.76090 4.81096 4.82493 5.03692 5.08032 5.11660 5.12670 5.16482 5.18720 5.26896 5.33796 5.41118 5.55580 5.76225 5.80989 5.98058 6.02103 6.07133 6.33779 6.56547 6.70730 6.94571 6.97169 7.22865 8.39596 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.004667 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.021303 B = 5997.517142 C = 7460.246795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.079 4.079 4 H 0.053 0.947 5 C -0.165 4.165 6 C 0.090 3.910 7 H 0.119 0.881 8 O -0.374 6.374 9 C 0.022 3.978 10 C 0.478 3.522 11 O -0.557 6.557 12 N -0.653 5.653 13 C 0.145 3.855 14 C -0.239 4.239 15 C -0.089 4.089 16 C -0.243 4.243 17 C 0.096 3.904 18 C -0.503 4.503 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.832 5.832 22 Si 0.983 3.017 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.261 1.261 26 C -0.192 4.192 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.417 0.583 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.287 0.713 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -15.961 -3.253 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.098 4.098 4 H 0.071 0.929 5 C -0.222 4.222 6 C 0.029 3.971 7 H 0.136 0.864 8 O -0.291 6.291 9 C -0.074 4.074 10 C 0.266 3.734 11 O -0.434 6.434 12 N -0.301 5.301 13 C 0.051 3.949 14 C -0.260 4.260 15 C -0.107 4.107 16 C -0.262 4.262 17 C 0.093 3.907 18 C -0.533 4.533 19 H 0.095 0.905 20 C -0.176 4.176 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.185 1.185 26 C -0.214 4.214 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.828 -15.875 -2.295 16.144 hybrid contribution -0.146 0.886 -0.565 1.061 sum -1.974 -14.989 -2.861 15.387 Atomic orbital electron populations 1.21829 0.95088 1.02326 1.01827 1.21427 0.96325 0.93253 1.03226 1.21160 0.89903 0.99515 0.99269 0.92852 1.22157 1.03742 1.00048 0.96275 1.22233 0.97636 0.85966 0.91303 0.86363 1.87957 1.36906 1.65172 1.39115 1.23067 0.83627 0.96397 1.04292 1.22329 0.77988 0.89683 0.83351 1.90661 1.46236 1.78060 1.28446 1.43795 1.61991 1.09881 1.14453 1.17765 0.94434 0.83883 0.98770 1.20657 1.01935 0.97130 1.06311 1.20765 0.98927 0.92556 0.98469 1.21285 1.04424 0.97934 1.02607 1.17753 0.90592 0.92578 0.89793 1.19756 0.95882 1.05617 1.32069 0.90519 1.26675 0.96718 0.97359 0.96832 1.69872 1.06754 1.33246 1.35968 0.85197 0.77539 0.78639 0.78265 1.18318 1.19586 1.18539 1.20910 1.03404 0.91435 1.05660 0.93867 0.91884 0.91329 0.89877 0.91538 0.89283 0.90050 0.93780 0.95501 0.87871 0.90864 0.74392 0.87532 0.86371 0.88002 0.90293 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.67 71.98 0.70 -1.80 16 2 C -0.10 -1.85 5.28 30.59 0.16 -1.69 16 3 C -0.08 -1.88 2.15 -10.79 -0.02 -1.90 16 4 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 5 C -0.17 -3.54 8.06 71.98 0.58 -2.96 16 6 C 0.09 2.38 2.15 29.85 0.06 2.45 16 7 H 0.12 2.25 7.79 -2.39 -0.02 2.23 16 8 O -0.37 -10.46 8.89 -130.18 -1.16 -11.62 16 9 C 0.02 0.46 10.81 113.37 1.23 1.69 16 10 C 0.48 17.90 6.76 87.66 0.59 18.49 16 11 O -0.56 -26.13 13.87 15.75 0.22 -25.91 16 12 N -0.65 -24.77 4.26 -303.65 -1.29 -26.07 16 13 C 0.14 6.94 6.33 38.10 0.24 7.18 16 14 C -0.24 -11.78 8.70 22.58 0.20 -11.59 16 15 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 16 C -0.24 -12.45 9.79 22.75 0.22 -12.23 16 17 C 0.10 5.23 5.51 -21.31 -0.12 5.12 16 18 C -0.50 -27.10 9.04 23.46 0.21 -26.89 16 19 H 0.08 3.99 7.88 -2.91 -0.02 3.97 16 20 C 0.04 1.91 5.18 85.25 0.44 2.35 16 21 N -0.83 -43.14 11.16 21.82 0.24 -42.89 16 22 Si 0.98 37.74 29.58 68.60 2.03 39.77 16 23 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 24 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 26 C -0.19 -10.01 8.55 22.85 0.20 -9.81 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.96 6.53 -2.38 -0.02 0.94 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.29 7.37 -2.38 -0.02 1.27 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.59 6.49 -2.39 -0.02 1.57 16 34 H 0.04 1.22 5.46 -2.39 -0.01 1.21 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 38 H 0.42 12.81 6.65 -92.71 -0.62 12.19 16 39 H 0.11 5.25 6.07 -2.91 -0.02 5.23 16 40 H 0.12 4.91 8.06 -2.92 -0.02 4.88 16 41 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 42 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 43 H 0.11 5.79 6.51 -2.91 -0.02 5.77 16 Total: -1.00 -68.98 347.29 5.34 -63.63 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.39 Total: 38.72 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 4.91 Total: -35.63 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.05 Total: -68.96 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.94 Total: -37.53 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -68.98 5.34 -63.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.338 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds