Wall clock time and date at job start Tue Mar 31 2020 07:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 H 1.08998 * 109.47270 * 305.00593 * 3 2 1 5 5 C 1.53003 * 109.46672 * 65.00003 * 3 2 1 6 6 C 1.53001 * 109.46945 * 184.99970 * 3 2 1 7 7 H 1.08996 * 109.46964 * 60.00711 * 6 3 2 8 8 O 1.42898 * 109.47218 * 300.00093 * 6 3 2 9 9 C 1.42901 * 113.99714 * 150.00083 * 8 6 3 10 10 C 1.50703 * 109.46786 * 180.02562 * 6 3 2 11 11 O 1.21288 * 120.00185 * 115.00112 * 10 6 3 12 12 N 1.34777 * 120.00053 * 295.00324 * 10 6 3 13 13 C 1.39937 * 120.00233 * 185.09223 * 12 10 6 14 14 C 1.39301 * 119.94440 * 33.25598 * 13 12 10 15 15 C 1.38484 * 120.42475 * 180.28416 * 14 13 12 16 16 C 1.37686 * 120.32493 * 359.48746 * 15 14 13 17 17 C 1.40745 * 119.88359 * 0.25605 * 16 15 14 18 18 C 1.41400 * 120.21073 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00369 * 209.18055 * 18 17 16 20 20 C 1.39936 * 120.00236 * 29.18631 * 18 17 16 21 21 N 1.30833 * 119.99588 * 15.62584 * 20 18 17 22 22 Si 1.86801 * 120.00283 * 195.63103 * 20 18 17 23 23 H 1.48497 * 109.47092 * 94.96961 * 22 20 18 24 24 H 1.48499 * 109.47220 * 214.97249 * 22 20 18 25 25 H 1.48499 * 109.46974 * 334.97083 * 22 20 18 26 26 C 1.38243 * 119.94927 * 213.02941 * 13 12 10 27 27 H 1.09000 * 109.46813 * 299.99753 * 1 2 3 28 28 H 1.08997 * 109.47203 * 59.99725 * 1 2 3 29 29 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46813 * 240.00247 * 2 1 3 31 31 H 1.08998 * 109.46651 * 120.00800 * 2 1 3 32 32 H 1.09001 * 109.47084 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47440 * 300.00287 * 5 3 2 34 34 H 1.08998 * 109.46791 * 60.00297 * 5 3 2 35 35 H 1.09002 * 109.46602 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.46913 * 300.00235 * 9 8 6 37 37 H 1.09004 * 109.46970 * 60.00410 * 9 8 6 38 38 H 0.96997 * 120.00214 * 5.08396 * 12 10 6 39 39 H 1.07997 * 119.78842 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.83784 * 179.76951 * 15 14 13 41 41 H 1.07998 * 120.06366 * 180.23829 * 16 15 14 42 42 H 0.96998 * 119.99629 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.15712 * 359.95396 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5650 1.4442 -0.1257 7 1 3.8532 0.9569 -1.0571 8 8 4.1347 0.7374 0.9779 9 6 5.3746 0.0935 0.6779 10 6 4.0674 2.8650 -0.1251 11 8 4.7647 3.2613 0.7847 12 7 3.7418 3.6954 -1.1355 13 6 4.2936 4.9801 -1.1908 14 6 5.5867 5.2023 -0.7228 15 6 6.1404 6.4708 -0.7673 16 6 5.4219 7.5251 -1.2850 17 6 4.1163 7.3147 -1.7665 18 6 3.3720 8.3927 -2.2990 19 1 2.2941 8.3900 -2.2319 20 6 4.0321 9.4629 -2.9131 21 7 5.2846 9.3405 -3.2707 22 14 3.1249 11.0664 -3.2222 23 1 3.3875 12.0072 -2.1036 24 1 3.5993 11.6661 -4.4952 25 1 1.6668 10.8005 -3.3134 26 6 3.5564 6.0259 -1.7142 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.9991 3.1539 1.3077 33 1 0.5491 2.1251 1.3970 34 1 2.0700 1.5873 2.1491 35 1 5.7412 -0.4208 1.5664 36 1 5.2239 -0.6294 -0.1238 37 1 6.1043 0.8393 0.3623 38 1 3.1250 3.4024 -1.8245 39 1 6.1595 4.3807 -0.3187 40 1 7.1424 6.6330 -0.3985 41 1 5.8593 8.5119 -1.3212 42 1 5.7420 10.0822 -3.6967 43 1 2.5555 5.8538 -2.0813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456746285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:04 Heat of formation + Delta-G solvation = -77.964279 kcal Electronic energy + Delta-G solvation = -23361.232370 eV Core-core repulsion = 19984.695625 eV Total energy + Delta-G solvation = -3376.536745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26019 -38.15705 -36.80229 -35.79405 -34.33736 -33.05829 -30.64339 -29.82552 -28.45992 -27.33382 -26.04850 -25.22548 -24.23011 -21.50853 -20.91752 -20.32795 -19.49609 -17.71079 -17.13141 -16.67453 -15.98214 -15.42906 -14.98120 -14.84489 -14.80597 -14.44649 -14.16233 -13.69126 -13.53253 -13.15402 -12.97613 -12.85278 -12.26628 -12.19662 -12.03472 -11.86196 -11.67208 -11.38790 -11.33839 -11.14169 -10.97251 -10.84308 -10.62804 -10.62170 -10.57457 -10.36633 -10.01733 -9.72309 -9.31480 -9.04496 -8.80911 -7.44219 -6.89180 -6.73064 -4.37116 2.55279 2.81692 3.08662 3.12287 3.16348 3.25547 3.47517 3.81710 3.95913 4.57455 4.63650 4.67995 4.80529 4.95251 5.08846 5.23273 5.32623 5.37907 5.45148 5.52663 5.58263 5.65397 5.68294 5.82879 5.89466 5.98249 6.02056 6.24047 6.27779 6.40678 6.52762 6.72737 6.90164 6.91835 7.03220 7.06231 7.24292 7.59402 7.67078 7.97520 8.04034 8.12202 8.30836 8.58135 8.69883 8.90348 8.96472 10.23902 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003599 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.077367 B = 7777.812548 C = 8673.384013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.083 4.083 4 H 0.085 0.915 5 C -0.147 4.147 6 C 0.078 3.922 7 H 0.083 0.917 8 O -0.352 6.352 9 C 0.029 3.971 10 C 0.484 3.516 11 O -0.507 6.507 12 N -0.666 5.666 13 C 0.152 3.848 14 C -0.223 4.223 15 C -0.097 4.097 16 C -0.162 4.162 17 C 0.125 3.875 18 C -0.469 4.469 19 H 0.077 0.923 20 C 0.077 3.923 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.241 4.241 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.398 0.602 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.279 0.721 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 -15.536 2.270 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.102 4.102 4 H 0.103 0.897 5 C -0.204 4.204 6 C 0.016 3.984 7 H 0.101 0.899 8 O -0.269 6.269 9 C -0.068 4.068 10 C 0.270 3.730 11 O -0.381 6.381 12 N -0.312 5.312 13 C 0.061 3.939 14 C -0.244 4.244 15 C -0.116 4.116 16 C -0.181 4.181 17 C 0.122 3.878 18 C -0.499 4.499 19 H 0.095 0.905 20 C -0.140 4.140 21 N -0.425 5.425 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.263 4.263 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.232 0.768 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.735 -15.198 3.015 16.201 hybrid contribution -0.367 0.657 -0.916 1.186 sum -5.102 -14.540 2.098 15.551 Atomic orbital electron populations 1.21830 0.95668 1.01503 1.02128 1.21504 0.95856 0.95356 1.02492 1.21286 0.90805 0.97802 1.00261 0.89662 1.21819 1.00961 1.00851 0.96808 1.22154 0.94874 0.90027 0.91330 0.89919 1.87961 1.36933 1.67528 1.34507 1.22847 0.86240 0.96205 1.01476 1.21243 0.81533 0.88038 0.82201 1.90722 1.36649 1.76249 1.34481 1.43563 1.46970 1.14113 1.26530 1.17450 0.92659 0.82426 1.01409 1.20306 0.94646 0.97360 1.12088 1.20581 0.98042 0.93099 0.99839 1.21291 0.96522 0.98093 1.02234 1.17360 0.91818 0.90659 0.87984 1.19495 0.94667 1.02233 1.33544 0.90489 1.25853 0.94821 0.99878 0.93434 1.69821 1.11096 1.32081 1.29509 0.86310 0.80681 0.81446 0.78308 1.19410 1.20364 1.18660 1.20737 0.99908 0.92040 1.13637 0.92285 0.92718 0.92846 0.92205 0.90966 0.92382 0.92305 0.91573 0.89400 0.94193 0.93587 0.76752 0.88191 0.89032 0.86767 0.90980 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.11 -1.02 5.19 -26.73 -0.14 -1.16 16 3 C -0.08 -0.90 2.23 -90.62 -0.20 -1.11 16 4 H 0.09 0.84 7.77 -51.93 -0.40 0.44 16 5 C -0.15 -1.85 8.56 37.16 0.32 -1.53 16 6 C 0.08 1.01 2.26 -27.88 -0.06 0.94 16 7 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 8 O -0.35 -4.83 8.63 -55.10 -0.48 -5.31 16 9 C 0.03 0.32 10.81 101.05 1.09 1.41 16 10 C 0.48 8.48 5.61 -10.98 -0.06 8.42 16 11 O -0.51 -11.08 14.17 -14.32 -0.20 -11.28 16 12 N -0.67 -11.84 5.30 -9.90 -0.05 -11.89 16 13 C 0.15 3.45 6.27 -83.76 -0.53 2.93 16 14 C -0.22 -5.37 8.66 -39.10 -0.34 -5.71 16 15 C -0.10 -2.38 10.02 -39.69 -0.40 -2.78 16 16 C -0.16 -4.28 8.66 -38.84 -0.34 -4.61 16 17 C 0.12 3.33 5.52 -106.85 -0.59 2.74 16 18 C -0.47 -12.42 9.04 -37.74 -0.34 -12.76 16 19 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 20 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 21 N -0.80 -20.75 11.15 55.55 0.62 -20.13 16 22 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.24 -5.84 9.70 -38.68 -0.38 -6.22 16 27 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 32 H 0.06 0.89 7.22 -51.93 -0.37 0.52 16 33 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 5.63 8.43 -40.82 -0.34 5.28 16 39 H 0.10 2.39 6.39 -52.49 -0.34 2.05 16 40 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.11 3.09 6.43 -52.49 -0.34 2.76 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -30.87 351.25 -8.15 -39.02 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.61 Total: 9.04 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.69 Total: -18.43 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.57 Total: -32.03 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.68 Total: -16.59 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.87 -8.15 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.943 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds