Wall clock time and date at job start Tue Mar 31 2020 07:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 H 1.08998 * 109.47270 * 305.00593 * 3 2 1 5 5 C 1.53003 * 109.46672 * 65.00003 * 3 2 1 6 6 C 1.53001 * 109.46945 * 184.99970 * 3 2 1 7 7 H 1.08996 * 109.46964 * 60.00711 * 6 3 2 8 8 O 1.42898 * 109.47218 * 300.00093 * 6 3 2 9 9 C 1.42901 * 113.99714 * 150.00083 * 8 6 3 10 10 C 1.50703 * 109.46786 * 180.02562 * 6 3 2 11 11 O 1.21288 * 120.00185 * 115.00112 * 10 6 3 12 12 N 1.34777 * 120.00053 * 295.00324 * 10 6 3 13 13 C 1.39937 * 120.00233 * 185.09223 * 12 10 6 14 14 C 1.39301 * 119.94440 * 33.25598 * 13 12 10 15 15 C 1.38484 * 120.42475 * 180.28416 * 14 13 12 16 16 C 1.37686 * 120.32493 * 359.48746 * 15 14 13 17 17 C 1.40745 * 119.88359 * 0.25605 * 16 15 14 18 18 C 1.41400 * 120.21073 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00369 * 209.18055 * 18 17 16 20 20 C 1.39936 * 120.00236 * 29.18631 * 18 17 16 21 21 N 1.30833 * 119.99588 * 15.62584 * 20 18 17 22 22 Si 1.86801 * 120.00283 * 195.63103 * 20 18 17 23 23 H 1.48497 * 109.47092 * 94.96961 * 22 20 18 24 24 H 1.48499 * 109.47220 * 214.97249 * 22 20 18 25 25 H 1.48499 * 109.46974 * 334.97083 * 22 20 18 26 26 C 1.38243 * 119.94927 * 213.02941 * 13 12 10 27 27 H 1.09000 * 109.46813 * 299.99753 * 1 2 3 28 28 H 1.08997 * 109.47203 * 59.99725 * 1 2 3 29 29 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46813 * 240.00247 * 2 1 3 31 31 H 1.08998 * 109.46651 * 120.00800 * 2 1 3 32 32 H 1.09001 * 109.47084 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47440 * 300.00287 * 5 3 2 34 34 H 1.08998 * 109.46791 * 60.00297 * 5 3 2 35 35 H 1.09002 * 109.46602 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.46913 * 300.00235 * 9 8 6 37 37 H 1.09004 * 109.46970 * 60.00410 * 9 8 6 38 38 H 0.96997 * 120.00214 * 5.08396 * 12 10 6 39 39 H 1.07997 * 119.78842 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.83784 * 179.76951 * 15 14 13 41 41 H 1.07998 * 120.06366 * 180.23829 * 16 15 14 42 42 H 0.96998 * 119.99629 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.15712 * 359.95396 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5650 1.4442 -0.1257 7 1 3.8532 0.9569 -1.0571 8 8 4.1347 0.7374 0.9779 9 6 5.3746 0.0935 0.6779 10 6 4.0674 2.8650 -0.1251 11 8 4.7647 3.2613 0.7847 12 7 3.7418 3.6954 -1.1355 13 6 4.2936 4.9801 -1.1908 14 6 5.5867 5.2023 -0.7228 15 6 6.1404 6.4708 -0.7673 16 6 5.4219 7.5251 -1.2850 17 6 4.1163 7.3147 -1.7665 18 6 3.3720 8.3927 -2.2990 19 1 2.2941 8.3900 -2.2319 20 6 4.0321 9.4629 -2.9131 21 7 5.2846 9.3405 -3.2707 22 14 3.1249 11.0664 -3.2222 23 1 3.3875 12.0072 -2.1036 24 1 3.5993 11.6661 -4.4952 25 1 1.6668 10.8005 -3.3134 26 6 3.5564 6.0259 -1.7142 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.9991 3.1539 1.3077 33 1 0.5491 2.1251 1.3970 34 1 2.0700 1.5873 2.1491 35 1 5.7412 -0.4208 1.5664 36 1 5.2239 -0.6294 -0.1238 37 1 6.1043 0.8393 0.3623 38 1 3.1250 3.4024 -1.8245 39 1 6.1595 4.3807 -0.3187 40 1 7.1424 6.6330 -0.3985 41 1 5.8593 8.5119 -1.3212 42 1 5.7420 10.0822 -3.6967 43 1 2.5555 5.8538 -2.0813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456746285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:04 Heat of formation + Delta-G solvation = -95.453157 kcal Electronic energy + Delta-G solvation = -23361.990745 eV Core-core repulsion = 19984.695625 eV Total energy + Delta-G solvation = -3377.295120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63129 -39.61156 -38.36354 -36.70691 -36.03386 -34.84749 -31.78924 -31.59816 -29.99694 -28.42497 -27.21020 -27.01147 -25.18295 -23.13141 -22.75410 -21.48637 -20.79257 -19.45319 -18.51483 -17.79313 -17.41033 -16.99269 -16.57198 -16.40576 -15.91161 -15.79093 -15.40853 -14.91421 -14.80806 -14.49205 -14.40544 -14.09522 -14.00250 -13.57385 -13.19636 -13.01119 -12.87670 -12.83545 -12.70423 -12.52530 -12.37400 -12.18788 -11.97512 -11.78672 -11.67621 -11.55990 -11.45235 -11.34870 -11.13811 -10.81993 -10.24098 -9.40470 -8.74072 -8.62353 -6.37726 0.82745 0.95482 1.40267 1.49497 1.53833 1.71852 2.09209 2.23056 2.76057 2.78682 3.54848 3.69702 3.71978 3.85814 4.05708 4.24816 4.39898 4.45564 4.51259 4.60965 4.62417 4.63571 4.72407 4.78419 4.82870 4.98736 4.99104 5.00449 5.10706 5.15089 5.18269 5.22995 5.25713 5.32150 5.48956 5.56152 5.72921 5.80238 5.98704 6.06985 6.07840 6.29709 6.61395 6.68699 6.92865 6.97001 7.26296 8.36855 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003599 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.077367 B = 7777.812548 C = 8673.384013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.080 4.080 4 H 0.101 0.899 5 C -0.144 4.144 6 C 0.086 3.914 7 H 0.118 0.882 8 O -0.369 6.369 9 C 0.023 3.977 10 C 0.483 3.517 11 O -0.555 6.555 12 N -0.657 5.657 13 C 0.163 3.837 14 C -0.236 4.236 15 C -0.100 4.100 16 C -0.189 4.189 17 C 0.098 3.902 18 C -0.501 4.501 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.829 5.829 22 Si 0.983 3.017 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.251 4.251 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.418 0.582 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.287 0.713 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -17.069 1.281 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.099 4.099 4 H 0.119 0.881 5 C -0.201 4.201 6 C 0.025 3.975 7 H 0.135 0.865 8 O -0.286 6.286 9 C -0.073 4.073 10 C 0.271 3.729 11 O -0.432 6.432 12 N -0.304 5.304 13 C 0.070 3.930 14 C -0.257 4.257 15 C -0.118 4.118 16 C -0.209 4.209 17 C 0.095 3.905 18 C -0.530 4.530 19 H 0.097 0.903 20 C -0.178 4.178 21 N -0.456 5.456 22 Si 0.804 3.196 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.179 1.179 26 C -0.273 4.273 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.256 0.744 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.365 -16.780 2.012 18.059 hybrid contribution 0.180 1.028 -0.555 1.182 sum -6.185 -15.752 1.456 16.986 Atomic orbital electron populations 1.21830 0.94828 1.02296 1.02147 1.21452 0.96477 0.93480 1.03057 1.21375 0.89321 0.99519 0.99691 0.88093 1.21783 1.02042 0.98635 0.97672 1.22284 0.95883 0.86635 0.92747 0.86461 1.87960 1.37819 1.67433 1.35420 1.23028 0.84842 0.96103 1.03311 1.22279 0.80131 0.89631 0.80839 1.90698 1.38794 1.77449 1.36223 1.43505 1.47057 1.12395 1.27454 1.17480 0.92010 0.84288 0.99267 1.20437 0.95537 0.97108 1.12654 1.20795 0.98745 0.93073 0.99230 1.21217 0.97285 0.97909 1.04479 1.17737 0.92264 0.92025 0.88446 1.19775 0.94953 1.03526 1.34777 0.90264 1.26735 0.95571 1.02972 0.92548 1.69881 1.12563 1.33427 1.29683 0.85177 0.79467 0.76530 0.78438 1.19067 1.19261 1.17949 1.20912 1.00724 0.91670 1.13991 0.92863 0.92125 0.91724 0.90354 0.91696 0.95883 0.90418 0.92703 0.88065 0.91085 0.95718 0.74387 0.88154 0.87404 0.88335 0.90201 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.54 5.19 30.60 0.16 -1.38 16 3 C -0.08 -1.55 2.23 -10.79 -0.02 -1.57 16 4 H 0.10 1.65 7.77 -2.39 -0.02 1.63 16 5 C -0.14 -3.48 8.56 71.98 0.62 -2.86 16 6 C 0.09 2.03 2.26 29.85 0.07 2.09 16 7 H 0.12 2.00 7.79 -2.39 -0.02 1.98 16 8 O -0.37 -9.50 8.63 -129.98 -1.12 -10.62 16 9 C 0.02 0.47 10.81 113.37 1.23 1.69 16 10 C 0.48 16.53 5.61 87.66 0.49 17.02 16 11 O -0.55 -24.54 14.17 15.94 0.23 -24.31 16 12 N -0.66 -22.64 5.30 -303.64 -1.61 -24.25 16 13 C 0.16 7.41 6.27 38.10 0.24 7.65 16 14 C -0.24 -11.58 8.66 22.58 0.20 -11.38 16 15 C -0.10 -5.04 10.02 22.20 0.22 -4.82 16 16 C -0.19 -10.37 8.66 22.75 0.20 -10.17 16 17 C 0.10 5.37 5.52 -21.31 -0.12 5.26 16 18 C -0.50 -26.95 9.04 23.46 0.21 -26.74 16 19 H 0.08 4.08 7.89 -2.91 -0.02 4.05 16 20 C 0.04 1.83 5.15 85.25 0.44 2.27 16 21 N -0.83 -43.80 11.15 21.82 0.24 -43.55 16 22 Si 0.98 38.22 29.59 68.60 2.03 40.25 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 24 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.25 -12.25 9.70 22.85 0.22 -12.03 16 27 H 0.05 0.72 6.56 -2.39 -0.02 0.71 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.06 7.84 -2.39 -0.02 1.04 16 32 H 0.02 0.70 7.22 -2.39 -0.02 0.68 16 33 H 0.08 1.53 6.56 -2.39 -0.02 1.52 16 34 H 0.05 1.43 7.68 -2.39 -0.02 1.41 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 37 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.42 10.90 8.43 -92.71 -0.78 10.12 16 39 H 0.10 4.88 6.39 -2.91 -0.02 4.86 16 40 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.10 5.60 6.43 -2.91 -0.02 5.58 16 42 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -69.22 351.25 4.83 -64.39 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.22 Total: 34.32 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 4.84 Total: -36.22 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.37 Total: -67.80 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.90 Total: -34.94 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -69.22 4.83 -64.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.061 kcal (2) G-P(sol) polarization free energy of solvation -69.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds