Wall clock time and date at job start Tue Mar 31 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47454 * 2 1 4 4 H 1.09004 * 109.46892 * 54.37247 * 3 2 1 5 5 C 1.53002 * 109.46976 * 294.37774 * 3 2 1 6 6 C 1.52999 * 109.47154 * 174.37297 * 3 2 1 7 7 H 1.08996 * 109.46986 * 302.54726 * 6 3 2 8 8 O 1.42894 * 109.46713 * 62.54777 * 6 3 2 9 9 C 1.42908 * 113.99922 * 208.63090 * 8 6 3 10 10 C 1.50699 * 109.46802 * 182.54604 * 6 3 2 11 11 O 1.21281 * 120.00040 * 244.99729 * 10 6 3 12 12 N 1.34777 * 120.00006 * 65.00682 * 10 6 3 13 13 C 1.39935 * 120.00126 * 174.84769 * 12 10 6 14 14 C 1.39299 * 119.94536 * 327.48239 * 13 12 10 15 15 C 1.38484 * 120.42580 * 179.75998 * 14 13 12 16 16 C 1.37685 * 120.32387 * 0.52063 * 15 14 13 17 17 C 1.40749 * 119.88356 * 359.74063 * 16 15 14 18 18 C 1.41408 * 120.20821 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99695 * 206.83437 * 18 17 16 20 20 C 1.39934 * 120.00129 * 26.83696 * 18 17 16 21 21 N 1.30834 * 119.99872 * 12.84763 * 20 18 17 22 22 Si 1.86800 * 119.99962 * 192.84889 * 20 18 17 23 23 H 1.48500 * 109.46983 * 60.00177 * 22 20 18 24 24 H 1.48502 * 109.46994 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47143 * 300.00226 * 22 20 18 26 26 C 1.38239 * 119.94756 * 147.75942 * 13 12 10 27 27 H 1.09002 * 109.47285 * 59.98915 * 1 2 3 28 28 H 1.08993 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46577 * 300.00040 * 1 2 3 30 30 H 1.09000 * 109.46577 * 240.00743 * 2 1 3 31 31 H 1.08993 * 109.47055 * 120.00956 * 2 1 3 32 32 H 1.09002 * 109.46878 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.46775 * 299.99473 * 5 3 2 34 34 H 1.08997 * 109.47164 * 60.00010 * 5 3 2 35 35 H 1.08995 * 109.47039 * 184.85885 * 9 8 6 36 36 H 1.09004 * 109.46787 * 304.85698 * 9 8 6 37 37 H 1.08995 * 109.46981 * 64.85440 * 9 8 6 38 38 H 0.97003 * 120.00038 * 354.83926 * 12 10 6 39 39 H 1.08001 * 119.78166 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.83892 * 180.25476 * 15 14 13 41 41 H 1.08002 * 120.05977 * 179.76052 * 16 15 14 42 42 H 0.96998 * 119.99856 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.16221 * 359.95987 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 6 1.6488 2.1218 -1.3139 6 6 3.5636 1.4447 0.1414 7 1 3.8443 0.9210 1.0552 8 8 4.1473 0.7856 -0.9840 9 6 5.4019 0.1607 -0.7053 10 6 4.0600 2.8662 0.2043 11 8 4.7649 3.3020 -0.6812 12 7 3.7209 3.6531 1.2446 13 6 4.2678 4.9360 1.3589 14 6 5.5594 5.1848 0.9004 15 6 6.1086 6.4518 1.0041 16 6 5.3870 7.4779 1.5718 17 6 4.0828 7.2402 2.0445 18 6 3.3354 8.2891 2.6282 19 1 2.5677 8.0659 3.3543 20 6 3.5904 9.6162 2.2651 21 7 4.3303 9.8773 1.2181 22 14 2.8747 11.0150 3.2753 23 1 3.3730 10.9229 4.6712 24 1 3.2900 12.3136 2.6867 25 1 1.3927 10.9205 3.2715 26 6 3.5275 5.9532 1.9319 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 2.0118 3.1496 -1.3137 33 1 2.0920 1.5797 -2.1492 34 1 0.5635 2.1202 -1.4146 35 1 5.8199 -0.2424 -1.6277 36 1 6.0888 0.8959 -0.2860 37 1 5.2540 -0.6479 0.0104 38 1 3.0976 3.3301 1.9141 39 1 6.1346 4.3852 0.4573 40 1 7.1093 6.6350 0.6417 41 1 5.8209 8.4635 1.6540 42 1 4.5068 10.7972 0.9662 43 1 2.5274 5.7605 2.2912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456746289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:07 Heat of formation + Delta-G solvation = -77.102669 kcal Electronic energy + Delta-G solvation = -23383.129494 eV Core-core repulsion = 20006.630111 eV Total energy + Delta-G solvation = -3376.499383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25057 -38.14443 -36.79020 -35.78987 -34.34296 -33.04947 -30.62651 -29.81825 -28.44869 -27.30860 -26.04618 -25.23193 -24.20439 -21.49319 -20.90689 -20.32067 -19.49349 -17.70128 -17.13380 -16.66210 -15.96115 -15.42936 -14.97452 -14.83680 -14.81039 -14.43245 -14.13978 -13.68081 -13.52648 -13.12411 -12.96958 -12.83235 -12.25404 -12.18431 -12.00859 -11.85683 -11.67004 -11.34258 -11.20150 -11.14148 -10.97652 -10.90359 -10.80006 -10.62180 -10.53650 -10.33879 -10.05438 -9.57729 -9.30138 -9.10733 -8.75919 -7.44709 -6.90732 -6.67311 -4.36734 2.56713 2.83241 3.07802 3.10155 3.16498 3.28912 3.48395 3.81713 3.95473 4.58101 4.64353 4.70106 4.81377 4.95634 5.10033 5.24875 5.32968 5.39027 5.45604 5.53927 5.59293 5.66152 5.69429 5.83889 5.90283 5.99358 6.03815 6.24996 6.29374 6.43122 6.54518 6.74830 6.91384 6.93581 7.04672 7.07538 7.27537 7.60889 7.67828 8.00043 8.04386 8.15520 8.32230 8.59501 8.71281 8.90704 8.98068 10.24627 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003654 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.236927 B = 7661.448839 C = 8533.338382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.082 4.082 4 H 0.085 0.915 5 C -0.147 4.147 6 C 0.078 3.922 7 H 0.083 0.917 8 O -0.352 6.352 9 C 0.029 3.971 10 C 0.483 3.517 11 O -0.506 6.506 12 N -0.666 5.666 13 C 0.152 3.848 14 C -0.226 4.226 15 C -0.097 4.097 16 C -0.165 4.165 17 C 0.122 3.878 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.799 5.799 22 Si 0.910 3.090 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.243 4.243 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.398 0.602 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.280 0.720 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -16.179 0.327 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.101 4.101 4 H 0.103 0.897 5 C -0.204 4.204 6 C 0.016 3.984 7 H 0.100 0.900 8 O -0.269 6.269 9 C -0.067 4.067 10 C 0.269 3.731 11 O -0.380 6.380 12 N -0.312 5.312 13 C 0.060 3.940 14 C -0.247 4.247 15 C -0.116 4.116 16 C -0.185 4.185 17 C 0.119 3.881 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.735 3.265 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.264 4.264 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.232 0.768 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.550 -15.726 -0.681 16.137 hybrid contribution -0.426 0.592 0.941 1.190 sum -3.977 -15.135 0.260 15.651 Atomic orbital electron populations 1.21827 0.95647 1.01498 1.02154 1.21516 0.95897 0.95365 1.02455 1.21282 0.90779 0.97763 1.00298 0.89675 1.21802 1.00965 1.00925 0.96698 1.22148 0.94793 0.90466 0.90947 0.89965 1.87966 1.35446 1.70205 1.33309 1.22832 0.85834 0.96163 1.01891 1.21259 0.81657 0.88259 0.81963 1.90726 1.36319 1.74194 1.36717 1.43553 1.46532 1.15166 1.25914 1.17449 0.92674 0.82597 1.01233 1.20322 0.94883 0.97508 1.11997 1.20602 0.98195 0.93098 0.99683 1.21431 0.94656 0.98492 1.03887 1.17376 0.91112 0.90673 0.88942 1.19477 1.17626 0.90320 1.22124 0.90600 1.25881 0.93980 1.00328 0.94040 1.69807 1.30497 1.21828 1.20350 0.86338 0.80064 0.79363 0.80723 1.18913 1.20375 1.19099 1.20714 0.98605 0.93753 1.13373 0.92282 0.92842 0.92703 0.91013 0.92196 0.92360 0.91541 0.92341 0.89427 0.93586 0.94224 0.76801 0.88173 0.89079 0.86075 0.90894 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.68 37.16 0.36 -0.87 16 2 C -0.11 -1.03 5.20 -26.73 -0.14 -1.17 16 3 C -0.08 -0.92 2.20 -90.62 -0.20 -1.12 16 4 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.15 -1.89 8.58 37.16 0.32 -1.57 16 6 C 0.08 1.02 2.22 -27.88 -0.06 0.96 16 7 H 0.08 0.86 7.84 -51.93 -0.41 0.46 16 8 O -0.35 -4.89 8.65 -55.09 -0.48 -5.37 16 9 C 0.03 0.33 10.79 101.05 1.09 1.42 16 10 C 0.48 8.56 5.67 -10.99 -0.06 8.49 16 11 O -0.51 -11.24 14.12 -14.30 -0.20 -11.44 16 12 N -0.67 -11.88 5.29 -9.91 -0.05 -11.93 16 13 C 0.15 3.46 6.28 -83.76 -0.53 2.94 16 14 C -0.23 -5.47 8.67 -39.10 -0.34 -5.81 16 15 C -0.10 -2.39 10.02 -39.69 -0.40 -2.79 16 16 C -0.16 -4.38 8.67 -38.84 -0.34 -4.72 16 17 C 0.12 3.26 5.56 -106.85 -0.59 2.67 16 18 C -0.47 -12.31 9.06 -37.74 -0.34 -12.65 16 19 H 0.08 1.90 7.88 -52.49 -0.41 1.49 16 20 C 0.07 1.88 5.23 -17.34 -0.09 1.79 16 21 N -0.80 -20.97 10.82 55.55 0.60 -20.37 16 22 Si 0.91 18.71 29.58 -169.99 -5.03 13.69 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.24 -5.88 9.70 -38.69 -0.38 -6.26 16 27 H 0.06 0.49 6.59 -51.93 -0.34 0.15 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.92 7.30 -51.93 -0.38 0.55 16 33 H 0.07 0.89 7.62 -51.93 -0.40 0.50 16 34 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 5.57 8.38 -40.82 -0.34 5.23 16 39 H 0.10 2.40 6.33 -52.49 -0.33 2.07 16 40 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.12 3.30 6.14 -52.49 -0.32 2.98 16 42 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 43 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -31.15 350.77 -8.17 -39.32 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.60 Total: 9.50 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.70 Total: -18.68 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.55 Total: -32.30 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.68 Total: -16.80 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.15 -8.17 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.785 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds