Wall clock time and date at job start Tue Mar 31 2020 07:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47454 * 2 1 4 4 H 1.09004 * 109.46892 * 54.37247 * 3 2 1 5 5 C 1.53002 * 109.46976 * 294.37774 * 3 2 1 6 6 C 1.52999 * 109.47154 * 174.37297 * 3 2 1 7 7 H 1.08996 * 109.46986 * 302.54726 * 6 3 2 8 8 O 1.42894 * 109.46713 * 62.54777 * 6 3 2 9 9 C 1.42908 * 113.99922 * 208.63090 * 8 6 3 10 10 C 1.50699 * 109.46802 * 182.54604 * 6 3 2 11 11 O 1.21281 * 120.00040 * 244.99729 * 10 6 3 12 12 N 1.34777 * 120.00006 * 65.00682 * 10 6 3 13 13 C 1.39935 * 120.00126 * 174.84769 * 12 10 6 14 14 C 1.39299 * 119.94536 * 327.48239 * 13 12 10 15 15 C 1.38484 * 120.42580 * 179.75998 * 14 13 12 16 16 C 1.37685 * 120.32387 * 0.52063 * 15 14 13 17 17 C 1.40749 * 119.88356 * 359.74063 * 16 15 14 18 18 C 1.41408 * 120.20821 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99695 * 206.83437 * 18 17 16 20 20 C 1.39934 * 120.00129 * 26.83696 * 18 17 16 21 21 N 1.30834 * 119.99872 * 12.84763 * 20 18 17 22 22 Si 1.86800 * 119.99962 * 192.84889 * 20 18 17 23 23 H 1.48500 * 109.46983 * 60.00177 * 22 20 18 24 24 H 1.48502 * 109.46994 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47143 * 300.00226 * 22 20 18 26 26 C 1.38239 * 119.94756 * 147.75942 * 13 12 10 27 27 H 1.09002 * 109.47285 * 59.98915 * 1 2 3 28 28 H 1.08993 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46577 * 300.00040 * 1 2 3 30 30 H 1.09000 * 109.46577 * 240.00743 * 2 1 3 31 31 H 1.08993 * 109.47055 * 120.00956 * 2 1 3 32 32 H 1.09002 * 109.46878 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.46775 * 299.99473 * 5 3 2 34 34 H 1.08997 * 109.47164 * 60.00010 * 5 3 2 35 35 H 1.08995 * 109.47039 * 184.85885 * 9 8 6 36 36 H 1.09004 * 109.46787 * 304.85698 * 9 8 6 37 37 H 1.08995 * 109.46981 * 64.85440 * 9 8 6 38 38 H 0.97003 * 120.00038 * 354.83926 * 12 10 6 39 39 H 1.08001 * 119.78166 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.83892 * 180.25476 * 15 14 13 41 41 H 1.08002 * 120.05977 * 179.76052 * 16 15 14 42 42 H 0.96998 * 119.99856 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.16221 * 359.95987 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 6 1.6488 2.1218 -1.3139 6 6 3.5636 1.4447 0.1414 7 1 3.8443 0.9210 1.0552 8 8 4.1473 0.7856 -0.9840 9 6 5.4019 0.1607 -0.7053 10 6 4.0600 2.8662 0.2043 11 8 4.7649 3.3020 -0.6812 12 7 3.7209 3.6531 1.2446 13 6 4.2678 4.9360 1.3589 14 6 5.5594 5.1848 0.9004 15 6 6.1086 6.4518 1.0041 16 6 5.3870 7.4779 1.5718 17 6 4.0828 7.2402 2.0445 18 6 3.3354 8.2891 2.6282 19 1 2.5677 8.0659 3.3543 20 6 3.5904 9.6162 2.2651 21 7 4.3303 9.8773 1.2181 22 14 2.8747 11.0150 3.2753 23 1 3.3730 10.9229 4.6712 24 1 3.2900 12.3136 2.6867 25 1 1.3927 10.9205 3.2715 26 6 3.5275 5.9532 1.9319 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 2.0118 3.1496 -1.3137 33 1 2.0920 1.5797 -2.1492 34 1 0.5635 2.1202 -1.4146 35 1 5.8199 -0.2424 -1.6277 36 1 6.0888 0.8959 -0.2860 37 1 5.2540 -0.6479 0.0104 38 1 3.0976 3.3301 1.9141 39 1 6.1346 4.3852 0.4573 40 1 7.1093 6.6350 0.6417 41 1 5.8209 8.4635 1.6540 42 1 4.5068 10.7972 0.9662 43 1 2.5274 5.7605 2.2912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456746289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:06 Heat of formation + Delta-G solvation = -94.918608 kcal Electronic energy + Delta-G solvation = -23383.902051 eV Core-core repulsion = 20006.630111 eV Total energy + Delta-G solvation = -3377.271940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63488 -39.60774 -38.36344 -36.71733 -36.04877 -34.84389 -31.78700 -31.58920 -29.99396 -28.42269 -27.22220 -27.02203 -25.16723 -23.12833 -22.74598 -21.48392 -20.81015 -19.45189 -18.52736 -17.79291 -17.39892 -17.01674 -16.56024 -16.40343 -15.90174 -15.78180 -15.40041 -14.90947 -14.80472 -14.50414 -14.39918 -14.07815 -13.99293 -13.55163 -13.04411 -13.01359 -12.90460 -12.86351 -12.73182 -12.70881 -12.33905 -12.18142 -11.98864 -11.79290 -11.67423 -11.46698 -11.44155 -11.36395 -11.14104 -10.84293 -10.21951 -9.41875 -8.77112 -8.56518 -6.37763 0.83805 0.96198 1.40210 1.50969 1.52935 1.73053 2.08732 2.23392 2.77086 2.77930 3.56668 3.69316 3.71781 3.85351 4.05172 4.24507 4.40662 4.44805 4.51833 4.60986 4.62318 4.64503 4.71895 4.78157 4.82734 4.99433 4.99926 5.02974 5.10944 5.15146 5.19444 5.22812 5.25393 5.33718 5.48473 5.55812 5.73235 5.80796 5.98986 6.07979 6.11081 6.30027 6.61843 6.70053 6.92701 6.98145 7.26815 8.36894 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003654 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.236927 B = 7661.448839 C = 8533.338382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.080 4.080 4 H 0.100 0.900 5 C -0.144 4.144 6 C 0.087 3.913 7 H 0.119 0.881 8 O -0.370 6.370 9 C 0.024 3.976 10 C 0.481 3.519 11 O -0.556 6.556 12 N -0.656 5.656 13 C 0.162 3.838 14 C -0.239 4.239 15 C -0.100 4.100 16 C -0.193 4.193 17 C 0.095 3.905 18 C -0.496 4.496 19 H 0.083 0.917 20 C 0.031 3.969 21 N -0.833 5.833 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.258 1.258 26 C -0.252 4.252 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.419 0.581 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.287 0.713 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -17.874 1.630 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.099 4.099 4 H 0.118 0.882 5 C -0.201 4.201 6 C 0.025 3.975 7 H 0.137 0.863 8 O -0.287 6.287 9 C -0.072 4.072 10 C 0.269 3.731 11 O -0.433 6.433 12 N -0.303 5.303 13 C 0.069 3.931 14 C -0.261 4.261 15 C -0.119 4.119 16 C -0.213 4.213 17 C 0.092 3.908 18 C -0.526 4.526 19 H 0.101 0.899 20 C -0.183 4.183 21 N -0.459 5.459 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.273 4.273 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.257 0.743 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.207 -17.474 0.636 18.244 hybrid contribution 0.116 1.019 0.448 1.119 sum -5.091 -16.455 1.084 17.258 Atomic orbital electron populations 1.21829 0.94842 1.02317 1.02129 1.21463 0.96485 0.93391 1.03118 1.21371 0.89378 0.99559 0.99575 0.88189 1.21768 1.02005 0.98591 0.97739 1.22278 0.95726 0.87071 0.92382 0.86310 1.87962 1.36383 1.70126 1.34232 1.23014 0.84520 0.96328 1.03367 1.22320 0.80228 0.89905 0.80602 1.90701 1.38571 1.75510 1.38478 1.43488 1.46628 1.13420 1.26790 1.17480 0.92009 0.84450 0.99158 1.20450 0.95820 0.97260 1.12526 1.20813 0.98889 0.93128 0.99111 1.21366 0.95386 0.98323 1.06192 1.17769 0.91453 0.92112 0.89483 1.19812 1.18428 0.91366 1.22958 0.89925 1.26825 0.94019 1.02699 0.94731 1.69891 1.31466 1.22843 1.21705 0.85175 0.79426 0.75711 0.78908 1.18208 1.19589 1.18219 1.20896 0.99476 0.93318 1.13642 0.92949 0.91656 0.92115 0.91683 0.90204 0.96104 0.92564 0.90493 0.88345 0.95599 0.90964 0.74315 0.88176 0.87550 0.87618 0.90268 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.68 71.98 0.70 -1.26 16 2 C -0.11 -1.54 5.20 30.60 0.16 -1.38 16 3 C -0.08 -1.58 2.20 -10.79 -0.02 -1.60 16 4 H 0.10 1.69 7.70 -2.39 -0.02 1.67 16 5 C -0.14 -3.58 8.58 71.98 0.62 -2.97 16 6 C 0.09 2.07 2.22 29.85 0.07 2.13 16 7 H 0.12 2.00 7.84 -2.39 -0.02 1.98 16 8 O -0.37 -9.65 8.65 -129.99 -1.12 -10.77 16 9 C 0.02 0.49 10.79 113.37 1.22 1.71 16 10 C 0.48 16.67 5.67 87.66 0.50 17.17 16 11 O -0.56 -25.05 14.12 15.96 0.23 -24.83 16 12 N -0.66 -22.65 5.29 -303.65 -1.61 -24.26 16 13 C 0.16 7.41 6.28 38.10 0.24 7.65 16 14 C -0.24 -11.80 8.67 22.58 0.20 -11.61 16 15 C -0.10 -5.13 10.02 22.20 0.22 -4.91 16 16 C -0.19 -10.63 8.67 22.75 0.20 -10.44 16 17 C 0.09 5.19 5.56 -21.31 -0.12 5.07 16 18 C -0.50 -26.62 9.06 23.46 0.21 -26.40 16 19 H 0.08 4.16 7.88 -2.91 -0.02 4.14 16 20 C 0.03 1.59 5.23 85.25 0.45 2.03 16 21 N -0.83 -44.72 10.82 21.82 0.24 -44.49 16 22 Si 0.99 38.16 29.58 68.60 2.03 40.18 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 24 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.25 -12.26 9.70 22.85 0.22 -12.04 16 27 H 0.05 0.73 6.59 -2.39 -0.02 0.71 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.06 7.91 -2.39 -0.02 1.04 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.02 0.65 7.30 -2.39 -0.02 0.63 16 33 H 0.06 1.49 7.62 -2.39 -0.02 1.47 16 34 H 0.08 1.58 6.59 -2.39 -0.02 1.57 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 10.76 8.38 -92.71 -0.78 9.98 16 39 H 0.10 4.91 6.33 -2.91 -0.02 4.89 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.11 6.05 6.14 -2.91 -0.02 6.03 16 42 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.25 350.77 4.84 -65.41 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.23 Total: 35.59 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.85 Total: -36.84 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.37 Total: -68.74 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.90 Total: -35.60 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -70.25 4.84 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456746289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.507 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds