Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38365 * 119.85439 * 269.72188 * 4 3 2 6 6 C 1.37956 * 120.14604 * 179.72711 * 5 4 3 7 7 C 1.39575 * 119.85049 * 0.54893 * 6 5 4 8 8 C 1.47852 * 120.14704 * 179.70411 * 7 6 5 9 9 O 1.21543 * 120.00478 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99319 * 0.02614 * 8 7 6 11 11 C 1.46496 * 119.99770 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47446 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47236 * 300.00363 * 12 11 10 14 14 C 1.53000 * 109.46978 * 60.00177 * 12 11 10 15 15 C 1.50694 * 109.47298 * 179.97438 * 12 11 10 16 16 H 1.07999 * 120.00133 * 0.02562 * 15 12 11 17 17 C 1.37882 * 120.00141 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99729 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00298 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47024 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47278 * 120.00084 * 19 17 15 22 22 H 1.48496 * 109.46999 * 240.00445 * 19 17 15 23 23 C 1.39580 * 119.71270 * 359.72610 * 7 6 5 24 24 C 1.37949 * 119.85288 * 0.02562 * 23 7 6 25 25 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 29 29 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 30 30 H 1.08000 * 119.92703 * 0.02562 * 5 4 3 31 31 H 1.07995 * 120.07611 * 180.25511 * 6 5 4 32 32 H 0.96997 * 120.00444 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47235 * 300.00164 * 11 10 8 34 34 H 1.09004 * 109.47036 * 59.99722 * 11 10 8 35 35 H 1.08996 * 109.47086 * 59.99747 * 13 12 11 36 36 H 1.08997 * 109.47069 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.46897 * 299.99682 * 13 12 11 38 38 H 1.08998 * 109.47108 * 59.99530 * 14 12 11 39 39 H 1.08994 * 109.47504 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.47198 * 300.00167 * 14 12 11 41 41 H 0.96993 * 119.99819 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.07243 * 179.97438 * 23 7 6 43 43 H 1.08005 * 119.93174 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1991 1.1381 1.2009 6 6 5.5739 1.0235 1.2086 7 6 6.2731 0.9679 0.0019 8 6 7.7470 0.8517 0.0024 9 8 8.3533 0.8039 -1.0499 10 7 8.4183 0.7987 1.1700 11 6 9.8787 0.6830 1.1706 12 6 10.3866 0.6436 2.6133 13 6 9.9765 1.9296 3.3337 14 6 9.7793 -0.5610 3.3351 15 6 11.8888 0.5239 2.6139 16 1 12.4274 0.4808 1.6789 17 6 12.5756 0.4707 3.8083 18 7 11.9197 0.5238 4.9470 19 14 14.4378 0.3231 3.8091 20 1 14.9318 0.2832 2.4092 21 1 15.0268 1.4933 4.5082 22 1 14.8351 -0.9241 4.5105 23 6 5.5748 1.0229 -1.2055 24 6 4.1997 1.1324 -1.1990 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 3.6572 1.1853 2.1339 31 1 6.1083 0.9817 2.1461 32 1 7.9345 0.8371 2.0098 33 1 10.1708 -0.2330 0.6571 34 1 10.3114 1.5414 0.6568 35 1 8.8900 2.0157 3.3332 36 1 10.3380 1.9013 4.3616 37 1 10.4092 2.7878 2.8194 38 1 10.0713 -1.4772 2.8218 39 1 10.1407 -0.5889 4.3630 40 1 8.6926 -0.4750 3.3346 41 1 12.4028 0.4859 5.7872 42 1 6.1101 0.9808 -2.1427 43 1 3.6582 1.1755 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -65.231912 kcal Electronic energy + Delta-G solvation = -22681.594468 eV Core-core repulsion = 19305.609839 eV Total energy + Delta-G solvation = -3375.984629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10384 -38.77420 -37.58993 -36.32174 -33.44400 -32.27747 -31.18184 -30.63170 -27.85905 -26.17221 -25.73717 -25.45844 -24.69420 -22.74320 -22.23200 -20.09653 -18.87583 -17.83400 -16.74132 -16.42748 -16.23182 -15.81317 -15.37970 -14.89921 -14.76615 -14.59861 -14.40955 -13.98068 -13.60964 -13.07080 -13.02920 -12.88768 -12.59509 -12.45209 -12.18694 -11.87680 -11.47543 -11.38499 -11.23915 -11.13245 -10.88506 -10.66604 -10.40047 -10.20935 -10.06631 -9.65407 -9.64709 -9.27867 -9.08198 -8.98706 -8.79049 -8.45638 -8.31196 -6.02769 -4.12628 0.74593 1.28852 2.93487 3.27211 3.35807 3.40324 3.60532 3.69115 4.01284 4.40034 4.55314 4.56099 4.80691 4.89977 4.93991 5.00913 5.05339 5.13511 5.24176 5.27893 5.31346 5.49356 5.69175 5.88238 6.15811 6.21022 6.31878 6.34877 6.36358 6.49943 6.73436 6.76458 6.78247 6.80868 6.93241 7.00272 7.01027 7.34392 7.54707 7.69102 7.99999 8.02172 8.14270 8.37605 8.65125 8.88323 9.53248 10.98807 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.002829 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.359121 B = 9893.671184 C =10400.177535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.101 3.899 4 C -0.078 4.078 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.117 4.117 8 C 0.545 3.455 9 O -0.548 6.548 10 N -0.709 5.709 11 C 0.131 3.869 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.066 4.066 24 C -0.108 4.108 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.397 0.603 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.259 0.741 42 H 0.138 0.862 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 2.105 -6.158 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.025 3.975 4 C -0.078 4.078 5 C -0.123 4.123 6 C -0.108 4.108 7 C -0.120 4.120 8 C 0.331 3.669 9 O -0.428 6.428 10 N -0.360 5.360 11 C 0.008 3.992 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.085 4.085 24 C -0.126 4.126 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.234 0.766 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.155 0.845 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.528 1.901 -6.684 21.672 hybrid contribution 0.550 0.159 0.530 0.780 sum -19.977 2.060 -6.154 21.005 Atomic orbital electron populations 1.22772 0.80918 1.02955 0.99998 1.87999 1.19645 1.27282 1.95405 1.21380 0.89811 0.85216 1.01083 1.19721 0.93985 1.00445 0.93685 1.20963 0.93913 0.99807 0.97633 1.21383 0.94349 0.97537 0.97513 1.20228 0.93820 1.03686 0.94294 1.18281 0.86665 0.77460 0.84497 1.90732 1.69693 1.51001 1.31350 1.46269 1.09757 1.72305 1.07648 1.21774 0.76086 1.00554 1.00749 1.18370 0.95506 0.92873 0.87802 1.21840 0.95288 0.97457 1.04333 1.21842 0.95002 0.97761 1.04325 1.21018 0.90277 1.50299 0.92703 0.92333 1.24888 0.98342 0.94823 0.95526 1.69812 1.34885 1.50599 0.97188 0.86507 0.85607 0.77567 0.78161 1.19749 1.21074 1.21060 1.21273 0.93584 0.95612 0.98029 1.20991 0.93910 1.00110 0.97571 0.89470 0.93961 0.94019 0.92244 0.92193 0.85372 0.85174 0.76606 0.92485 0.92495 0.97584 0.89510 0.95353 0.95337 0.89514 0.97580 0.93056 0.84457 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.85 10.69 -35.23 -0.38 -4.22 16 3 C 0.10 0.86 6.06 36.01 0.22 1.08 16 4 C -0.08 -0.83 5.52 -104.53 -0.58 -1.41 16 5 C -0.11 -1.15 9.68 -39.64 -0.38 -1.54 16 6 C -0.09 -1.13 9.54 -39.19 -0.37 -1.50 16 7 C -0.12 -1.75 5.87 -104.96 -0.62 -2.36 16 8 C 0.54 10.03 7.77 -12.32 -0.10 9.93 16 9 O -0.55 -11.84 16.35 5.33 0.09 -11.75 16 10 N -0.71 -13.05 4.91 -61.25 -0.30 -13.35 16 11 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 15 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 18 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.07 -0.88 9.60 -39.19 -0.38 -1.26 16 24 C -0.11 -1.19 9.68 -39.64 -0.38 -1.58 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.49 6.41 -52.49 -0.34 1.16 16 32 H 0.40 6.57 4.20 -40.82 -0.17 6.40 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 36 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 41 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 42 H 0.14 1.83 7.65 -52.48 -0.40 1.43 16 43 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -29.91 350.64 -7.59 -37.50 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.44 Total: 4.41 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.34 Total: -10.54 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.22 Total: -36.40 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.29 Total: -15.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.91 -7.59 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.733 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds