Wall clock time and date at job start Tue Mar 31 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38365 * 119.85439 * 269.72188 * 4 3 2 6 6 C 1.37956 * 120.14604 * 179.72711 * 5 4 3 7 7 C 1.39575 * 119.85049 * 0.54893 * 6 5 4 8 8 C 1.47852 * 120.14704 * 179.70411 * 7 6 5 9 9 O 1.21543 * 120.00478 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99319 * 0.02614 * 8 7 6 11 11 C 1.46496 * 119.99770 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47446 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47236 * 300.00363 * 12 11 10 14 14 C 1.53000 * 109.46978 * 60.00177 * 12 11 10 15 15 C 1.50694 * 109.47298 * 179.97438 * 12 11 10 16 16 H 1.07999 * 120.00133 * 0.02562 * 15 12 11 17 17 C 1.37882 * 120.00141 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99729 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00298 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47024 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47278 * 120.00084 * 19 17 15 22 22 H 1.48496 * 109.46999 * 240.00445 * 19 17 15 23 23 C 1.39580 * 119.71270 * 359.72610 * 7 6 5 24 24 C 1.37949 * 119.85288 * 0.02562 * 23 7 6 25 25 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 29 29 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 30 30 H 1.08000 * 119.92703 * 0.02562 * 5 4 3 31 31 H 1.07995 * 120.07611 * 180.25511 * 6 5 4 32 32 H 0.96997 * 120.00444 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47235 * 300.00164 * 11 10 8 34 34 H 1.09004 * 109.47036 * 59.99722 * 11 10 8 35 35 H 1.08996 * 109.47086 * 59.99747 * 13 12 11 36 36 H 1.08997 * 109.47069 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.46897 * 299.99682 * 13 12 11 38 38 H 1.08998 * 109.47108 * 59.99530 * 14 12 11 39 39 H 1.08994 * 109.47504 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.47198 * 300.00167 * 14 12 11 41 41 H 0.96993 * 119.99819 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.07243 * 179.97438 * 23 7 6 43 43 H 1.08005 * 119.93174 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1991 1.1381 1.2009 6 6 5.5739 1.0235 1.2086 7 6 6.2731 0.9679 0.0019 8 6 7.7470 0.8517 0.0024 9 8 8.3533 0.8039 -1.0499 10 7 8.4183 0.7987 1.1700 11 6 9.8787 0.6830 1.1706 12 6 10.3866 0.6436 2.6133 13 6 9.9765 1.9296 3.3337 14 6 9.7793 -0.5610 3.3351 15 6 11.8888 0.5239 2.6139 16 1 12.4274 0.4808 1.6789 17 6 12.5756 0.4707 3.8083 18 7 11.9197 0.5238 4.9470 19 14 14.4378 0.3231 3.8091 20 1 14.9318 0.2832 2.4092 21 1 15.0268 1.4933 4.5082 22 1 14.8351 -0.9241 4.5105 23 6 5.5748 1.0229 -1.2055 24 6 4.1997 1.1324 -1.1990 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 3.6572 1.1853 2.1339 31 1 6.1083 0.9817 2.1461 32 1 7.9345 0.8371 2.0098 33 1 10.1708 -0.2330 0.6571 34 1 10.3114 1.5414 0.6568 35 1 8.8900 2.0157 3.3332 36 1 10.3380 1.9013 4.3616 37 1 10.4092 2.7878 2.8194 38 1 10.0713 -1.4772 2.8218 39 1 10.1407 -0.5889 4.3630 40 1 8.6926 -0.4750 3.3346 41 1 12.4028 0.4859 5.7872 42 1 6.1101 0.9808 -2.1427 43 1 3.6582 1.1755 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:45 Heat of formation + Delta-G solvation = -82.724185 kcal Electronic energy + Delta-G solvation = -22682.352990 eV Core-core repulsion = 19305.609839 eV Total energy + Delta-G solvation = -3376.743150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31588 -39.86686 -38.44427 -38.01172 -35.13401 -33.41865 -32.54832 -31.88984 -28.68529 -27.58062 -27.47162 -26.98711 -26.04490 -23.67365 -23.33372 -21.38283 -20.65784 -19.17051 -17.85592 -17.34553 -17.24824 -17.02025 -16.57959 -16.51898 -16.31556 -15.77046 -15.43922 -15.09298 -14.77214 -14.65483 -14.49015 -14.22695 -13.92688 -13.55918 -13.19930 -13.13782 -13.10053 -12.70725 -12.58083 -12.53875 -12.27219 -12.17298 -12.13114 -12.04449 -11.50619 -11.33511 -10.97559 -10.70500 -10.62024 -10.41317 -10.14653 -9.98815 -9.80329 -8.03159 -6.18666 -0.26733 0.37988 1.41218 1.45367 1.54804 1.77325 2.22942 2.48218 2.69242 3.18214 3.20531 3.68125 3.76601 3.93131 4.00017 4.22996 4.33939 4.40715 4.46636 4.48383 4.57353 4.61371 4.66066 4.68380 4.79616 4.92318 4.96054 5.01770 5.03315 5.09899 5.17529 5.24865 5.32616 5.36101 5.49472 5.54054 5.65682 5.67016 5.85976 6.13381 6.19576 6.23033 6.42297 6.58633 6.85139 7.20110 7.48978 8.96196 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.002829 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.359121 B = 9893.671184 C =10400.177535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.100 3.900 4 C -0.073 4.073 5 C -0.104 4.104 6 C -0.090 4.090 7 C -0.142 4.142 8 C 0.545 3.455 9 O -0.589 6.589 10 N -0.703 5.703 11 C 0.146 3.854 12 C 0.051 3.949 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.527 4.527 16 H 0.044 0.956 17 C 0.028 3.972 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.077 4.077 24 C -0.105 4.105 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.408 0.592 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.128 0.872 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.788 2.478 -5.738 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.024 3.976 4 C -0.074 4.074 5 C -0.122 4.122 6 C -0.108 4.108 7 C -0.145 4.145 8 C 0.333 3.667 9 O -0.471 6.471 10 N -0.354 5.354 11 C 0.022 3.978 12 C 0.051 3.949 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.566 4.566 16 H 0.063 0.937 17 C -0.172 4.172 18 N -0.538 5.538 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.096 4.096 24 C -0.123 4.123 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.247 0.753 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.146 0.854 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.187 2.277 -6.245 24.121 hybrid contribution 1.240 0.043 0.372 1.296 sum -21.946 2.320 -5.873 22.837 Atomic orbital electron populations 1.22948 0.79164 1.03770 1.01231 1.87943 1.21620 1.28069 1.95690 1.21483 0.87970 0.85160 1.02991 1.20122 0.95645 0.98279 0.93304 1.21291 0.93203 0.98665 0.99037 1.21512 0.95256 0.97179 0.96879 1.19992 0.91411 1.07111 0.96019 1.18851 0.88263 0.76001 0.83559 1.90700 1.70950 1.52821 1.32635 1.46065 1.08361 1.72542 1.08470 1.21354 0.78055 0.99050 0.99325 1.18364 0.94227 0.93568 0.88770 1.21687 0.97167 0.96603 1.02523 1.21692 0.96815 0.96965 1.02538 1.21281 0.92158 1.50830 0.92326 0.93729 1.25457 1.01664 0.94717 0.95357 1.69907 1.35898 1.50615 0.97354 0.85688 0.81641 0.77569 0.77798 1.20079 1.20668 1.20697 1.21328 0.94747 0.96246 0.97257 1.21247 0.92857 0.99110 0.99113 0.88998 0.92724 0.92758 0.90434 0.90290 0.82689 0.84209 0.75346 0.94150 0.94050 0.94503 0.91643 0.96191 0.96265 0.91629 0.94558 0.92981 0.85361 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.98 10.69 -148.98 -1.59 -8.57 16 3 C 0.10 1.31 6.06 71.24 0.43 1.74 16 4 C -0.07 -1.34 5.52 -19.80 -0.11 -1.45 16 5 C -0.10 -1.96 9.68 22.23 0.22 -1.74 16 6 C -0.09 -2.09 9.54 22.53 0.21 -1.87 16 7 C -0.14 -4.16 5.87 -20.09 -0.12 -4.28 16 8 C 0.54 20.27 7.77 86.79 0.67 20.95 16 9 O -0.59 -26.29 16.35 -3.85 -0.06 -26.35 16 10 N -0.70 -25.76 4.91 -465.98 -2.29 -28.05 16 11 C 0.15 6.41 4.50 86.38 0.39 6.79 16 12 C 0.05 2.40 0.50 -52.93 -0.03 2.38 16 13 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 14 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 15 C -0.53 -28.13 8.01 25.60 0.21 -27.92 16 16 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 17 C 0.03 1.47 5.15 84.66 0.44 1.90 16 18 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 19 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.08 -2.01 9.60 22.53 0.22 -1.79 16 24 C -0.11 -2.11 9.68 22.23 0.22 -1.89 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 29 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.14 2.87 6.41 -2.91 -0.02 2.86 16 32 H 0.41 12.94 4.20 -92.71 -0.39 12.55 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 36 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 40 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 41 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 42 H 0.13 3.50 7.65 -2.91 -0.02 3.48 16 43 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.16 350.64 4.05 -61.11 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.61 Total: 20.19 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.15 Total: -15.47 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -2.09 Total: -75.77 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.66 Total: -34.92 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.16 4.05 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.617 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds