Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99635 * 2 1 4 4 C 1.50705 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.38376 * 119.92629 * 270.02522 * 4 3 2 6 6 C 1.38342 * 120.29325 * 180.02562 * 5 4 3 7 7 C 1.37975 * 120.14040 * 359.69340 * 6 5 4 8 8 C 1.39560 * 119.85508 * 0.53311 * 7 6 5 9 9 C 1.47844 * 120.14342 * 179.77081 * 8 7 6 10 10 O 1.21558 * 119.99685 * 179.72614 * 9 8 7 11 11 N 1.34773 * 120.00230 * 359.72208 * 9 8 7 12 12 C 1.46507 * 119.99974 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46969 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47238 * 299.99922 * 13 12 11 15 15 C 1.53000 * 109.47245 * 59.99511 * 13 12 11 16 16 C 1.50698 * 109.46989 * 179.97438 * 13 12 11 17 17 H 1.08005 * 120.00111 * 1.34773 * 16 13 12 18 18 C 1.37875 * 119.99787 * 181.34595 * 16 13 12 19 19 N 1.31525 * 119.99835 * 193.97683 * 18 16 13 20 20 Si 1.86797 * 120.00382 * 13.97713 * 18 16 13 21 21 H 1.48497 * 109.47094 * 84.54669 * 20 18 16 22 22 H 1.48504 * 109.47494 * 204.54933 * 20 18 16 23 23 H 1.48503 * 109.46849 * 324.54974 * 20 18 16 24 24 C 1.37936 * 119.92744 * 90.00203 * 4 3 2 25 25 H 1.09003 * 109.46372 * 60.00389 * 1 2 3 26 26 H 1.08999 * 109.46588 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47405 * 300.00576 * 1 2 3 28 28 H 1.09001 * 109.47308 * 59.99908 * 3 2 1 29 29 H 1.08996 * 109.47127 * 299.99649 * 3 2 1 30 30 H 1.08002 * 119.85623 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92892 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.07632 * 180.28038 * 7 6 5 33 33 H 0.96995 * 120.00268 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47124 * 60.00186 * 12 11 9 35 35 H 1.08999 * 109.46455 * 299.99896 * 12 11 9 36 36 H 1.08997 * 109.47311 * 69.36692 * 14 13 12 37 37 H 1.08994 * 109.47494 * 189.37318 * 14 13 12 38 38 H 1.09006 * 109.46566 * 309.37144 * 14 13 12 39 39 H 1.09002 * 109.47041 * 60.00367 * 15 13 12 40 40 H 1.09003 * 109.46893 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47257 * 300.00068 * 15 13 12 42 42 H 0.96998 * 119.99788 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.07211 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2002 1.1317 1.2002 6 6 5.5793 1.0231 1.2096 7 6 6.2777 0.9622 0.0212 8 6 5.5906 1.0218 -1.1921 9 6 6.3329 0.9623 -2.4693 10 8 5.7314 1.0094 -3.5246 11 7 7.6764 0.8559 -2.4636 12 6 8.4120 0.7975 -3.7293 13 6 9.9103 0.6783 -3.4433 14 6 10.3745 1.8945 -2.6394 15 6 10.1763 -0.5961 -2.6395 16 6 10.6669 0.6176 -4.7452 17 1 10.1345 0.6817 -5.6827 18 6 12.0388 0.4801 -4.7395 19 7 12.7263 0.7005 -5.8389 20 14 12.9210 -0.0190 -3.1705 21 1 12.9052 -1.4984 -3.0429 22 1 14.3262 0.4587 -3.2192 23 1 12.2328 0.5859 -2.0018 24 6 4.1991 1.1320 -1.1945 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6580 1.1748 2.1332 31 1 6.1101 0.9812 2.1493 32 1 7.3539 0.8728 0.0298 33 1 8.1565 0.8188 -1.6216 34 1 8.2222 1.7052 -4.3021 35 1 8.0816 -0.0692 -4.3018 36 1 9.9541 1.8480 -1.6348 37 1 11.4627 1.8958 -2.5782 38 1 10.0372 2.8062 -3.1325 39 1 9.8457 -1.4626 -3.2122 40 1 11.2438 -0.6812 -2.4362 41 1 9.6290 -0.5526 -1.6978 42 1 13.6914 0.6035 -5.8349 43 1 3.6612 1.1749 -2.1300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -44.913015 kcal Electronic energy + Delta-G solvation = -22868.772300 eV Core-core repulsion = 19493.668765 eV Total energy + Delta-G solvation = -3375.103535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21307 -38.81768 -37.65760 -36.66742 -33.54215 -32.30662 -31.50372 -31.09593 -27.63222 -26.44917 -26.22239 -25.54806 -24.99912 -23.31275 -21.97757 -20.02249 -19.26358 -17.71876 -16.71249 -16.42861 -16.24904 -16.02560 -15.65877 -15.29172 -15.13840 -14.89999 -14.44457 -14.10497 -13.59647 -13.37386 -13.00781 -12.87781 -12.62417 -12.59625 -12.53839 -12.23267 -12.06294 -11.85084 -11.66840 -11.31820 -11.21429 -10.45434 -10.33991 -10.18930 -10.08505 -10.04629 -9.65455 -9.13993 -9.11560 -9.10912 -8.70407 -8.55045 -8.45233 -6.15717 -4.13096 0.75166 1.10863 2.89150 3.22963 3.29930 3.37731 3.49397 3.60216 3.95848 4.34441 4.51768 4.56581 4.72141 4.88103 4.90781 5.02780 5.03276 5.06578 5.14837 5.18649 5.33897 5.38756 5.60073 5.76257 5.78739 6.02683 6.04214 6.16372 6.18202 6.27770 6.33551 6.46624 6.50172 6.60677 6.66358 6.67985 6.75578 6.79131 6.93925 7.19512 7.40965 7.70511 7.88372 8.42942 8.53987 8.89741 9.47997 10.97355 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.003091 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.725718 B = 9055.809533 C = 9517.586044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.104 4.104 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.128 4.128 9 C 0.548 3.452 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.141 3.859 13 C 0.028 3.972 14 C -0.143 4.143 15 C -0.149 4.149 16 C -0.513 4.513 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.891 5.891 20 Si 0.885 3.115 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.249 1.249 24 C -0.040 4.040 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 1.423 17.342 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.099 4.099 8 C -0.131 4.131 9 C 0.335 3.665 10 O -0.422 6.422 11 N -0.366 5.366 12 C 0.019 3.981 13 C 0.027 3.973 14 C -0.200 4.200 15 C -0.205 4.205 16 C -0.551 4.551 17 H 0.095 0.905 18 C -0.127 4.127 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.234 1.234 23 H -0.175 1.175 24 C -0.059 4.059 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.958 1.300 16.444 25.130 hybrid contribution 0.748 -0.180 1.195 1.422 sum -18.210 1.120 17.639 25.377 Atomic orbital electron populations 1.22769 0.80910 1.02944 1.00012 1.87994 1.19662 1.27336 1.95406 1.21335 0.89561 0.85213 1.01125 1.19509 0.94216 1.03418 0.93300 1.21195 0.94338 0.96755 0.97432 1.21077 0.94119 1.01401 0.98123 1.21430 1.00101 0.96535 0.91847 1.20113 0.94357 1.05134 0.93511 1.18224 0.82577 0.77273 0.88459 1.90757 1.68519 1.50550 1.32391 1.46249 1.06020 1.73043 1.11333 1.21565 0.91653 1.01692 0.83187 1.18728 0.90915 0.91467 0.96192 1.22308 1.01536 0.99430 0.96747 1.22373 0.99651 1.00342 0.98170 1.20708 0.91618 1.51586 0.91166 0.90488 1.24977 0.97301 0.94409 0.96060 1.69955 1.07235 1.47401 1.28132 0.87294 0.77224 0.78651 0.85034 1.21326 1.23391 1.17525 1.21159 0.92788 0.93775 0.98227 0.93884 0.89489 0.94067 0.92274 0.92076 0.85652 0.85197 0.85389 0.76849 0.91650 0.91748 0.96028 0.92432 0.93312 0.92680 0.93965 0.95261 0.92542 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.04 10.69 -35.23 -0.38 -4.41 16 3 C 0.10 0.93 6.06 36.01 0.22 1.15 16 4 C -0.10 -1.14 5.50 -104.68 -0.58 -1.71 16 5 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16 6 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 7 C -0.08 -0.91 9.54 -39.18 -0.37 -1.29 16 8 C -0.13 -1.80 5.87 -104.97 -0.62 -2.42 16 9 C 0.55 9.52 7.77 -12.33 -0.10 9.42 16 10 O -0.54 -11.31 16.35 5.31 0.09 -11.23 16 11 N -0.72 -12.10 4.95 -61.25 -0.30 -12.41 16 12 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 13 C 0.03 0.61 0.50 -155.66 -0.08 0.54 16 14 C -0.14 -2.89 7.53 37.16 0.28 -2.61 16 15 C -0.15 -3.00 7.52 37.16 0.28 -2.73 16 16 C -0.51 -13.76 8.62 -34.44 -0.30 -14.05 16 17 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 19 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 20 Si 0.89 21.00 22.79 -169.99 -3.87 17.12 16 21 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 22 H -0.31 -7.42 7.11 56.52 0.40 -7.01 16 23 H -0.25 -5.34 4.65 56.52 0.26 -5.08 16 24 C -0.04 -0.53 9.24 -39.19 -0.36 -0.89 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.26 6.41 -52.48 -0.34 0.93 16 33 H 0.40 5.77 4.29 -40.82 -0.18 5.59 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 37 H 0.06 1.24 4.30 -51.93 -0.22 1.01 16 38 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 41 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.14 1.85 7.65 -52.49 -0.40 1.45 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -32.26 340.75 -6.28 -38.54 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.32 Total: 4.26 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.40 Total: -11.19 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.47 Total: -38.23 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.29 Total: -15.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -3.87 Total: 17.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.26 -6.28 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.373 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds