Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99635 * 2 1 4 4 C 1.50705 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.38376 * 119.92629 * 270.02522 * 4 3 2 6 6 C 1.38342 * 120.29325 * 180.02562 * 5 4 3 7 7 C 1.37975 * 120.14040 * 359.69340 * 6 5 4 8 8 C 1.39560 * 119.85508 * 0.53311 * 7 6 5 9 9 C 1.47844 * 120.14342 * 179.77081 * 8 7 6 10 10 O 1.21558 * 119.99685 * 179.72614 * 9 8 7 11 11 N 1.34773 * 120.00230 * 359.72208 * 9 8 7 12 12 C 1.46507 * 119.99974 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46969 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47238 * 299.99922 * 13 12 11 15 15 C 1.53000 * 109.47245 * 59.99511 * 13 12 11 16 16 C 1.50698 * 109.46989 * 179.97438 * 13 12 11 17 17 H 1.08005 * 120.00111 * 1.34773 * 16 13 12 18 18 C 1.37875 * 119.99787 * 181.34595 * 16 13 12 19 19 N 1.31525 * 119.99835 * 193.97683 * 18 16 13 20 20 Si 1.86797 * 120.00382 * 13.97713 * 18 16 13 21 21 H 1.48497 * 109.47094 * 84.54669 * 20 18 16 22 22 H 1.48504 * 109.47494 * 204.54933 * 20 18 16 23 23 H 1.48503 * 109.46849 * 324.54974 * 20 18 16 24 24 C 1.37936 * 119.92744 * 90.00203 * 4 3 2 25 25 H 1.09003 * 109.46372 * 60.00389 * 1 2 3 26 26 H 1.08999 * 109.46588 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47405 * 300.00576 * 1 2 3 28 28 H 1.09001 * 109.47308 * 59.99908 * 3 2 1 29 29 H 1.08996 * 109.47127 * 299.99649 * 3 2 1 30 30 H 1.08002 * 119.85623 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92892 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.07632 * 180.28038 * 7 6 5 33 33 H 0.96995 * 120.00268 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47124 * 60.00186 * 12 11 9 35 35 H 1.08999 * 109.46455 * 299.99896 * 12 11 9 36 36 H 1.08997 * 109.47311 * 69.36692 * 14 13 12 37 37 H 1.08994 * 109.47494 * 189.37318 * 14 13 12 38 38 H 1.09006 * 109.46566 * 309.37144 * 14 13 12 39 39 H 1.09002 * 109.47041 * 60.00367 * 15 13 12 40 40 H 1.09003 * 109.46893 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47257 * 300.00068 * 15 13 12 42 42 H 0.96998 * 119.99788 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.07211 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2002 1.1317 1.2002 6 6 5.5793 1.0231 1.2096 7 6 6.2777 0.9622 0.0212 8 6 5.5906 1.0218 -1.1921 9 6 6.3329 0.9623 -2.4693 10 8 5.7314 1.0094 -3.5246 11 7 7.6764 0.8559 -2.4636 12 6 8.4120 0.7975 -3.7293 13 6 9.9103 0.6783 -3.4433 14 6 10.3745 1.8945 -2.6394 15 6 10.1763 -0.5961 -2.6395 16 6 10.6669 0.6176 -4.7452 17 1 10.1345 0.6817 -5.6827 18 6 12.0388 0.4801 -4.7395 19 7 12.7263 0.7005 -5.8389 20 14 12.9210 -0.0190 -3.1705 21 1 12.9052 -1.4984 -3.0429 22 1 14.3262 0.4587 -3.2192 23 1 12.2328 0.5859 -2.0018 24 6 4.1991 1.1320 -1.1945 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6580 1.1748 2.1332 31 1 6.1101 0.9812 2.1493 32 1 7.3539 0.8728 0.0298 33 1 8.1565 0.8188 -1.6216 34 1 8.2222 1.7052 -4.3021 35 1 8.0816 -0.0692 -4.3018 36 1 9.9541 1.8480 -1.6348 37 1 11.4627 1.8958 -2.5782 38 1 10.0372 2.8062 -3.1325 39 1 9.8457 -1.4626 -3.2122 40 1 11.2438 -0.6812 -2.4362 41 1 9.6290 -0.5526 -1.6978 42 1 13.6914 0.6035 -5.8349 43 1 3.6612 1.1749 -2.1300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -67.678588 kcal Electronic energy + Delta-G solvation = -22869.759490 eV Core-core repulsion = 19493.668765 eV Total energy + Delta-G solvation = -3376.090724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35787 -39.88760 -38.55650 -38.19579 -35.14896 -33.70959 -32.86223 -32.08807 -28.37023 -28.03716 -27.65134 -26.98989 -26.21762 -24.50904 -22.80624 -21.29794 -20.99290 -18.90105 -18.09895 -17.45382 -17.32102 -17.12366 -16.82920 -16.51740 -16.38866 -16.26725 -15.40857 -15.15355 -15.00317 -14.74609 -14.72567 -14.38433 -14.01661 -13.76359 -13.63336 -13.50719 -13.16263 -12.95359 -12.60851 -12.40055 -12.34012 -12.19536 -11.96657 -11.95395 -11.78188 -11.16114 -10.98581 -10.65628 -10.62463 -10.39952 -10.20558 -9.93000 -9.84316 -8.30411 -6.32608 -0.16743 0.28305 1.36689 1.38419 1.51608 1.81065 2.17977 2.34927 2.68472 3.05473 3.18009 3.66275 3.78303 3.90823 4.04724 4.10146 4.23239 4.29725 4.30858 4.39281 4.41071 4.54619 4.57806 4.61857 4.73786 4.79964 4.82437 4.86709 4.87974 4.92823 4.98891 5.04049 5.14476 5.30783 5.36733 5.39233 5.49364 5.49952 5.70467 5.78264 5.88797 6.19867 6.29043 6.55753 6.71807 7.19297 7.32206 8.86854 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.003091 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.725718 B = 9055.809533 C = 9517.586044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.102 3.898 4 C -0.111 4.111 5 C -0.069 4.069 6 C -0.121 4.121 7 C -0.079 4.079 8 C -0.152 4.152 9 C 0.547 3.453 10 O -0.590 6.590 11 N -0.703 5.703 12 C 0.156 3.844 13 C 0.028 3.972 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.519 4.519 17 H 0.026 0.974 18 C 0.015 3.985 19 N -0.947 5.947 20 Si 0.946 3.054 21 H -0.281 1.281 22 H -0.315 1.315 23 H -0.201 1.201 24 C -0.060 4.060 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.265 0.735 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 1.342 22.854 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.026 3.974 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.139 4.139 7 C -0.098 4.098 8 C -0.155 4.155 9 C 0.336 3.664 10 O -0.473 6.473 11 N -0.355 5.355 12 C 0.032 3.968 13 C 0.027 3.973 14 C -0.200 4.200 15 C -0.205 4.205 16 C -0.557 4.557 17 H 0.044 0.956 18 C -0.182 4.182 19 N -0.586 5.586 20 Si 0.775 3.225 21 H -0.209 1.209 22 H -0.244 1.244 23 H -0.124 1.124 24 C -0.079 4.079 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.250 0.750 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.803 1.224 22.005 29.629 hybrid contribution 0.832 -0.131 -0.586 1.026 sum -18.971 1.092 21.419 28.633 Atomic orbital electron populations 1.22947 0.79261 1.03801 1.01135 1.87938 1.21582 1.28212 1.95652 1.21432 0.88470 0.85043 1.02467 1.19761 0.95368 1.02936 0.93004 1.21646 0.94756 0.94371 0.97937 1.21508 0.94202 0.99423 0.98732 1.21662 1.01099 0.95799 0.91245 1.19860 0.94445 1.08518 0.92666 1.18831 0.82432 0.75766 0.89359 1.90729 1.69368 1.52613 1.34549 1.45948 1.05947 1.73073 1.10517 1.21102 0.91489 0.99699 0.84515 1.18655 0.90668 0.93706 0.94267 1.22237 1.01020 0.97889 0.98813 1.22316 0.99924 0.98521 0.99787 1.21014 0.92062 1.50680 0.91986 0.95558 1.25898 0.98168 0.94279 0.99864 1.70122 1.07537 1.49714 1.31204 0.86316 0.75424 0.78534 0.82267 1.20870 1.24435 1.12419 1.21147 0.92808 0.95254 0.98668 0.93498 0.88870 0.92179 0.89503 0.92172 0.82398 0.81510 0.83520 0.74991 0.93947 0.93881 0.91399 0.93329 0.94065 0.93528 0.94382 0.90706 0.92642 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.99 10.69 -148.98 -1.59 -9.58 16 3 C 0.10 1.62 6.06 71.24 0.43 2.05 16 4 C -0.11 -2.17 5.50 -19.90 -0.11 -2.28 16 5 C -0.07 -1.00 9.69 22.33 0.22 -0.78 16 6 C -0.12 -1.67 10.03 22.23 0.22 -1.45 16 7 C -0.08 -1.50 9.54 22.53 0.21 -1.29 16 8 C -0.15 -4.08 5.87 -20.09 -0.12 -4.20 16 9 C 0.55 19.06 7.77 86.79 0.67 19.73 16 10 O -0.59 -25.84 16.35 -3.90 -0.06 -25.90 16 11 N -0.70 -22.86 4.95 -465.96 -2.31 -25.17 16 12 C 0.16 6.43 4.49 86.38 0.39 6.81 16 13 C 0.03 1.20 0.50 -52.93 -0.03 1.18 16 14 C -0.14 -5.35 7.53 71.98 0.54 -4.81 16 15 C -0.15 -5.55 7.52 71.98 0.54 -5.01 16 16 C -0.52 -28.92 8.62 25.60 0.22 -28.69 16 17 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 18 C 0.02 0.87 5.32 84.65 0.45 1.32 16 19 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 20 Si 0.95 42.43 22.79 68.60 1.56 43.99 16 21 H -0.28 -12.39 7.10 99.48 0.71 -11.68 16 22 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 23 H -0.20 -7.47 4.65 99.48 0.46 -7.00 16 24 C -0.06 -1.55 9.24 22.52 0.21 -1.34 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.15 2.13 6.41 -2.91 -0.02 2.11 16 33 H 0.41 10.44 4.29 -92.71 -0.40 10.04 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.92 7.13 -2.39 -0.02 1.91 16 37 H 0.05 1.92 4.30 -2.39 -0.01 1.90 16 38 H 0.04 1.59 8.12 -2.38 -0.02 1.57 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.46 2.25 -2.39 -0.01 1.46 16 41 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.12 3.37 7.65 -2.91 -0.02 3.35 16 Total: -1.00 -76.16 340.75 3.38 -72.78 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.37 Total: 19.85 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 5.11 Total: -17.22 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.01 Total: -83.91 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.66 Total: -35.48 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.56 Total: 43.99 kcal Total: -76.16 3.38 -72.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.103 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds