Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47243 * 239.99333 * 2 1 3 5 5 H 1.07995 * 120.00700 * 240.00317 * 4 2 1 6 6 C 1.37884 * 119.99368 * 60.00355 * 4 2 1 7 7 N 1.31516 * 120.00234 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99534 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47565 * 60.00245 * 8 6 4 10 10 H 1.48508 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47510 * 299.99832 * 8 6 4 12 12 C 1.53009 * 109.46990 * 120.00131 * 2 1 3 13 13 N 1.46497 * 109.46584 * 299.99793 * 12 2 1 14 14 C 1.34782 * 120.00004 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00404 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47326 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47322 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.94432 * 89.99694 * 18 17 16 20 20 C 1.38137 * 120.06013 * 180.02562 * 19 18 17 21 21 C 1.38737 * 119.94162 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.05545 * 180.02562 * 21 20 19 23 23 C 1.38734 * 119.88732 * 0.27760 * 21 20 19 24 24 C 1.38143 * 119.94306 * 359.42517 * 23 21 20 25 25 H 1.08997 * 109.47124 * 300.00281 * 1 2 3 26 26 H 1.08998 * 109.46898 * 60.00461 * 1 2 3 27 27 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47507 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46760 * 299.99623 * 3 2 1 30 30 H 1.08997 * 109.47253 * 59.99798 * 3 2 1 31 31 H 0.96995 * 119.99538 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46947 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47155 * 59.99947 * 12 2 1 34 34 H 0.97002 * 120.00614 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47186 * 59.99143 * 16 14 13 36 36 H 1.09008 * 109.46639 * 299.99589 * 16 14 13 37 37 H 1.08997 * 109.47096 * 59.99460 * 17 16 14 38 38 H 1.09005 * 109.46515 * 299.99512 * 17 16 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03660 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00170 * 90.00174 * 22 21 20 42 42 H 1.07999 * 120.02623 * 179.72382 * 23 21 20 43 43 H 1.08005 * 119.97511 * 180.27480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8281 -2.5200 -4.0081 10 1 1.8280 -0.4195 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6696 15 8 2.5748 -1.4769 3.7809 16 6 1.3748 0.2193 4.9000 17 6 1.8848 -0.5018 6.1493 18 6 1.3825 0.2087 7.3797 19 6 0.1742 -0.1576 7.9433 20 6 -0.2887 0.4923 9.0708 21 6 0.4601 1.5132 9.6381 22 8 0.0072 2.1538 10.7477 23 6 1.6697 1.8824 9.0677 24 6 2.1312 1.2251 7.9437 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7091 1.1612 -3.4844 32 1 3.1300 -0.7217 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2848 0.2187 4.9000 36 1 1.7375 1.2473 4.8999 37 1 2.9748 -0.5015 6.1494 38 1 1.5217 -1.5296 6.1491 39 1 -0.4082 -0.9527 7.5014 40 1 -1.2328 0.2062 9.5104 41 1 0.2925 1.7504 11.5789 42 1 2.2523 2.6797 9.5049 43 1 3.0749 1.5091 7.5019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -77.571173 kcal Electronic energy + Delta-G solvation = -22349.860024 eV Core-core repulsion = 18973.340324 eV Total energy + Delta-G solvation = -3376.519699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09270 -39.25988 -37.30868 -36.36793 -33.41533 -33.25883 -31.24500 -30.90885 -29.08216 -25.83555 -25.73470 -25.18606 -23.73139 -23.05884 -21.33480 -19.91520 -18.76986 -18.69169 -17.06069 -16.19813 -15.99557 -15.76458 -15.32357 -15.17079 -15.06912 -14.60297 -13.99807 -13.78459 -13.49156 -13.23074 -13.05134 -12.76591 -12.61031 -12.20041 -12.15512 -11.76005 -11.50959 -11.37869 -11.18939 -11.04998 -10.84687 -10.73529 -10.70077 -10.38976 -10.21097 -9.64072 -9.57391 -9.25030 -9.24525 -8.80692 -8.67306 -8.45184 -8.30686 -6.02556 -4.12735 0.95627 1.09877 3.06798 3.29642 3.32731 3.33991 3.37535 3.77571 3.95177 4.39623 4.60148 4.67082 4.73952 5.02439 5.05740 5.13873 5.24028 5.31741 5.33108 5.56779 5.65585 5.69604 5.87006 6.06568 6.09607 6.16072 6.23979 6.32600 6.43424 6.50488 6.56872 6.77893 6.81822 6.93037 7.01090 7.04221 7.34499 7.34878 7.54965 7.68773 8.00338 8.06077 8.15476 8.38066 8.71477 8.87970 9.53017 10.98809 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040843 B = 0.002433 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.385697 B =11507.582957 C =11700.961570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.718 5.718 14 C 0.503 3.497 15 O -0.555 6.555 16 C -0.136 4.136 17 C -0.064 4.064 18 C -0.085 4.085 19 C -0.100 4.100 20 C -0.143 4.143 21 C 0.094 3.906 22 O -0.501 6.501 23 C -0.143 4.143 24 C -0.100 4.100 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.388 0.612 42 H 0.127 0.873 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 2.434 22.008 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.288 3.712 15 O -0.434 6.434 16 C -0.176 4.176 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.162 4.162 21 C 0.050 3.950 22 O -0.311 6.311 23 C -0.162 4.162 24 C -0.118 4.118 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.233 0.767 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.243 0.757 42 H 0.145 0.855 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.573 2.222 21.494 21.665 hybrid contribution 0.195 -0.277 -0.537 0.635 sum -1.378 1.946 20.956 21.091 Atomic orbital electron populations 1.21832 0.97781 0.99161 1.00096 1.18353 0.92785 0.92753 0.90607 1.21831 0.98574 0.98373 1.00099 1.20951 1.31529 1.12103 0.89916 0.92510 1.24887 0.94869 0.94931 0.98858 1.69793 1.36642 1.22712 1.23334 0.86628 0.79237 0.79786 0.82170 1.20283 1.21329 1.20287 1.21704 0.98095 0.95771 0.83553 1.46347 1.52537 1.31796 1.06126 1.20569 0.80774 0.84857 0.84981 1.90666 1.38823 1.26870 1.87084 1.21655 1.02605 1.00755 0.92610 1.20327 1.01776 0.98880 0.89219 1.20038 0.94809 0.96648 0.97025 1.21010 0.95659 0.99756 0.95372 1.21417 1.00669 0.96119 0.97966 1.18490 0.92964 0.93402 0.90155 1.84833 1.75901 1.55270 1.15123 1.21414 0.95702 1.01031 0.98008 1.21011 0.99991 0.95378 0.95418 0.97483 0.89595 0.95459 0.95458 0.89594 0.97477 0.92944 0.92794 0.92799 0.76697 0.89069 0.89068 0.90060 0.90056 0.85406 0.85511 0.75653 0.85510 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.76 16 13 N -0.72 -12.48 4.96 -60.29 -0.30 -12.78 16 14 C 0.50 8.28 7.83 -10.98 -0.09 8.19 16 15 O -0.56 -11.17 15.98 5.55 0.09 -11.08 16 16 C -0.14 -1.59 5.68 -27.89 -0.16 -1.75 16 17 C -0.06 -0.71 4.63 -27.89 -0.13 -0.84 16 18 C -0.09 -0.85 5.13 -104.60 -0.54 -1.38 16 19 C -0.10 -0.93 9.69 -39.61 -0.38 -1.32 16 20 C -0.14 -1.30 9.99 -39.43 -0.39 -1.69 16 21 C 0.09 0.88 6.71 -39.21 -0.26 0.62 16 22 O -0.50 -4.14 13.50 -19.41 -0.26 -4.40 16 23 C -0.14 -1.30 9.99 -39.43 -0.39 -1.69 16 24 C -0.10 -0.93 9.69 -39.61 -0.38 -1.32 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.24 6.16 -40.82 -0.25 5.99 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.39 1.28 9.06 45.56 0.41 1.70 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -30.32 352.63 -8.04 -38.36 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.79 Total: 6.34 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.59 Total: -14.38 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.22 Total: -35.84 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.17 Total: -15.48 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -8.04 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.207 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds