Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47243 * 239.99333 * 2 1 3 5 5 H 1.07995 * 120.00700 * 240.00317 * 4 2 1 6 6 C 1.37884 * 119.99368 * 60.00355 * 4 2 1 7 7 N 1.31516 * 120.00234 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99534 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47565 * 60.00245 * 8 6 4 10 10 H 1.48508 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47510 * 299.99832 * 8 6 4 12 12 C 1.53009 * 109.46990 * 120.00131 * 2 1 3 13 13 N 1.46497 * 109.46584 * 299.99793 * 12 2 1 14 14 C 1.34782 * 120.00004 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00404 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47326 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47322 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.94432 * 89.99694 * 18 17 16 20 20 C 1.38137 * 120.06013 * 180.02562 * 19 18 17 21 21 C 1.38737 * 119.94162 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.05545 * 180.02562 * 21 20 19 23 23 C 1.38734 * 119.88732 * 0.27760 * 21 20 19 24 24 C 1.38143 * 119.94306 * 359.42517 * 23 21 20 25 25 H 1.08997 * 109.47124 * 300.00281 * 1 2 3 26 26 H 1.08998 * 109.46898 * 60.00461 * 1 2 3 27 27 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47507 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46760 * 299.99623 * 3 2 1 30 30 H 1.08997 * 109.47253 * 59.99798 * 3 2 1 31 31 H 0.96995 * 119.99538 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46947 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47155 * 59.99947 * 12 2 1 34 34 H 0.97002 * 120.00614 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47186 * 59.99143 * 16 14 13 36 36 H 1.09008 * 109.46639 * 299.99589 * 16 14 13 37 37 H 1.08997 * 109.47096 * 59.99460 * 17 16 14 38 38 H 1.09005 * 109.46515 * 299.99512 * 17 16 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03660 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00170 * 90.00174 * 22 21 20 42 42 H 1.07999 * 120.02623 * 179.72382 * 23 21 20 43 43 H 1.08005 * 119.97511 * 180.27480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8281 -2.5200 -4.0081 10 1 1.8280 -0.4195 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6696 15 8 2.5748 -1.4769 3.7809 16 6 1.3748 0.2193 4.9000 17 6 1.8848 -0.5018 6.1493 18 6 1.3825 0.2087 7.3797 19 6 0.1742 -0.1576 7.9433 20 6 -0.2887 0.4923 9.0708 21 6 0.4601 1.5132 9.6381 22 8 0.0072 2.1538 10.7477 23 6 1.6697 1.8824 9.0677 24 6 2.1312 1.2251 7.9437 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7091 1.1612 -3.4844 32 1 3.1300 -0.7217 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2848 0.2187 4.9000 36 1 1.7375 1.2473 4.8999 37 1 2.9748 -0.5015 6.1494 38 1 1.5217 -1.5296 6.1491 39 1 -0.4082 -0.9527 7.5014 40 1 -1.2328 0.2062 9.5104 41 1 0.2925 1.7504 11.5789 42 1 2.2523 2.6797 9.5049 43 1 3.0749 1.5091 7.5019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457998612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -96.349655 kcal Electronic energy + Delta-G solvation = -22350.674320 eV Core-core repulsion = 18973.340324 eV Total energy + Delta-G solvation = -3377.333995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95549 -40.45679 -38.26198 -37.82000 -34.95971 -34.31649 -32.70106 -31.90111 -29.99140 -27.55664 -27.48504 -26.89108 -24.87620 -23.71919 -22.16988 -21.21618 -20.57032 -19.30737 -18.41567 -17.65027 -17.02086 -16.83464 -16.49692 -16.42127 -16.30957 -15.98926 -14.97833 -14.97146 -14.75567 -14.40925 -14.34011 -13.95550 -13.88915 -13.73482 -13.18043 -13.07731 -12.90661 -12.65320 -12.64105 -12.55139 -12.29643 -12.24212 -12.13208 -11.91695 -11.47589 -11.33125 -11.26403 -10.82058 -10.66737 -10.39293 -9.91384 -9.89295 -9.39089 -8.02062 -6.17847 0.27686 0.43337 1.43931 1.45120 1.51658 1.75514 2.35388 2.51018 2.73397 3.21324 3.35998 3.74820 3.91653 4.07919 4.10582 4.24700 4.31726 4.48379 4.50092 4.52290 4.61853 4.70343 4.74207 4.96138 4.96613 5.01879 5.06813 5.12417 5.14903 5.20377 5.23233 5.38530 5.39816 5.50191 5.63121 5.67323 5.67879 5.71683 5.93979 6.16036 6.22654 6.44023 6.72633 6.86489 6.88732 7.38281 7.49766 8.96528 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040843 B = 0.002433 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.385697 B =11507.582957 C =11700.961570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.594 6.594 16 C -0.124 4.124 17 C -0.058 4.058 18 C -0.094 4.094 19 C -0.104 4.104 20 C -0.151 4.151 21 C 0.091 3.909 22 O -0.513 6.513 23 C -0.151 4.151 24 C -0.104 4.104 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.409 0.591 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.409 0.591 42 H 0.140 0.860 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 3.302 23.484 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.365 5.365 14 C 0.290 3.710 15 O -0.476 6.476 16 C -0.164 4.164 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.170 4.170 21 C 0.046 3.954 22 O -0.326 6.326 23 C -0.170 4.170 24 C -0.122 4.122 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.246 0.754 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.268 0.732 42 H 0.158 0.842 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.199 3.106 22.999 23.312 hybrid contribution 0.386 -0.546 -0.905 1.125 sum -1.813 2.560 22.094 22.315 Atomic orbital electron populations 1.21676 0.97120 0.98651 1.00466 1.18358 0.93257 0.93035 0.90365 1.21676 0.97898 0.97875 1.00469 1.21259 1.31732 1.12166 0.91649 0.93811 1.25462 0.95181 0.95620 1.00982 1.69900 1.36972 1.23248 1.23653 0.85828 0.78621 0.78819 0.79601 1.20268 1.20816 1.20282 1.21230 0.96889 0.95027 0.84521 1.46198 1.52808 1.32005 1.05463 1.21409 0.79618 0.84271 0.85697 1.90653 1.40537 1.28792 1.87608 1.21661 1.03751 1.01041 0.89900 1.20208 1.01164 0.98525 0.89637 1.19929 0.95388 0.97208 0.96930 1.21169 0.95582 0.99975 0.95471 1.21601 1.01265 0.96151 0.97943 1.18650 0.92976 0.93220 0.90513 1.84773 1.76107 1.55716 1.15975 1.21598 0.95938 1.01427 0.97987 1.21169 1.00340 0.95170 0.95514 0.94268 0.91947 0.96357 0.96360 0.91947 0.94262 0.93027 0.94539 0.94542 0.75375 0.86904 0.86901 0.91008 0.91004 0.84416 0.84241 0.73229 0.84244 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.02 8.01 25.60 0.21 -27.81 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.44 5.15 84.66 0.44 1.88 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.94 42.61 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.22 4.50 86.38 0.39 6.61 16 13 N -0.71 -23.70 4.96 -463.05 -2.30 -25.99 16 14 C 0.50 15.84 7.83 87.66 0.69 16.52 16 15 O -0.59 -23.80 15.98 -3.04 -0.05 -23.85 16 16 C -0.12 -2.58 5.68 29.85 0.17 -2.41 16 17 C -0.06 -1.19 4.63 29.85 0.14 -1.05 16 18 C -0.09 -1.70 5.13 -19.85 -0.10 -1.80 16 19 C -0.10 -1.74 9.69 22.25 0.22 -1.52 16 20 C -0.15 -2.43 9.99 22.37 0.22 -2.21 16 21 C 0.09 1.50 6.71 22.51 0.15 1.66 16 22 O -0.51 -7.34 13.50 -92.38 -1.25 -8.59 16 23 C -0.15 -2.43 9.99 22.37 0.22 -2.20 16 24 C -0.10 -1.74 9.69 22.25 0.22 -1.52 16 25 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 26 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 30 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 31 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.41 11.68 6.16 -92.71 -0.57 11.11 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 38 H 0.07 1.61 8.04 -2.38 -0.02 1.59 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.41 1.81 9.06 -74.06 -0.67 1.14 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -64.95 352.63 2.50 -62.45 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.23 Total: 20.15 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.09 Total: -21.09 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -2.10 Total: -73.71 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.30 Total: -32.44 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -64.95 2.50 -62.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.898 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds