Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 114.00430 * 2 1 4 4 C 1.53001 * 109.46854 * 60.00039 * 3 2 1 5 5 C 1.52998 * 109.46770 * 300.00177 * 3 2 1 6 6 C 1.52997 * 109.47323 * 179.97438 * 3 2 1 7 7 N 1.46503 * 109.47299 * 64.99842 * 6 3 2 8 8 C 1.46503 * 120.00082 * 270.00396 * 7 6 3 9 9 C 1.34777 * 119.99578 * 89.99381 * 7 6 3 10 10 O 1.21545 * 120.00309 * 4.60123 * 9 7 6 11 11 C 1.47888 * 120.00005 * 184.59255 * 9 7 6 12 12 C 1.39920 * 120.02509 * 142.20746 * 11 9 7 13 13 C 1.38330 * 120.35435 * 180.02562 * 12 11 9 14 14 C 1.37745 * 120.41522 * 359.97438 * 13 12 11 15 15 C 1.40748 * 120.04167 * 359.97438 * 14 13 12 16 16 C 1.41443 * 120.17770 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99826 * 147.27382 * 16 15 14 18 18 C 1.39932 * 120.00047 * 327.27512 * 16 15 14 19 19 N 1.30833 * 120.00391 * 351.64553 * 18 16 15 20 20 Si 1.86804 * 119.99870 * 171.64852 * 18 16 15 21 21 H 1.48497 * 109.47200 * 84.99139 * 20 18 16 22 22 H 1.48498 * 109.47045 * 204.99427 * 20 18 16 23 23 H 1.48501 * 109.47007 * 324.98923 * 20 18 16 24 24 C 1.38993 * 120.02565 * 322.23779 * 11 9 7 25 25 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47187 * 300.00382 * 1 2 3 27 27 H 1.09003 * 109.47272 * 59.99521 * 1 2 3 28 28 H 1.09002 * 109.46484 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46894 * 299.99909 * 4 3 2 30 30 H 1.09000 * 109.47095 * 60.00309 * 4 3 2 31 31 H 1.08999 * 109.47048 * 299.99594 * 5 3 2 32 32 H 1.08999 * 109.47599 * 59.99710 * 5 3 2 33 33 H 1.09005 * 109.46628 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47367 * 304.99920 * 6 3 2 35 35 H 1.09003 * 109.47144 * 184.99815 * 6 3 2 36 36 H 1.09001 * 109.46635 * 264.40472 * 8 7 6 37 37 H 1.08994 * 109.46891 * 24.40883 * 8 7 6 38 38 H 1.09004 * 109.46731 * 144.41086 * 8 7 6 39 39 H 1.07997 * 119.82218 * 0.02562 * 12 11 9 40 40 H 1.08001 * 119.79163 * 180.02562 * 13 12 11 41 41 H 1.08005 * 119.97821 * 180.02562 * 14 13 12 42 42 H 0.96989 * 119.99844 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.20459 * 359.69388 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1846 0.0006 7 7 3.9767 0.5638 -1.2509 8 6 4.1062 -0.8927 -1.3403 9 6 4.2633 1.3328 -2.3200 10 8 4.2367 2.5440 -2.2221 11 6 4.6103 0.7029 -3.6122 12 6 4.1629 1.2705 -4.8103 13 6 4.4830 0.6867 -6.0228 14 6 5.2460 -0.4594 -6.0651 15 6 5.7059 -1.0442 -4.8704 16 6 6.4899 -2.2208 -4.9105 17 1 7.2530 -2.3869 -4.1645 18 6 6.2770 -3.1695 -5.9168 19 7 5.2513 -3.0518 -6.7205 20 14 7.4571 -4.6043 -6.1126 21 1 7.0608 -5.7003 -5.1924 22 1 7.4127 -5.0940 -7.5139 23 1 8.8359 -4.1590 -5.7874 24 6 5.3805 -0.4539 -3.6375 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.0019 3.0606 1.2490 29 1 0.4722 2.1508 1.2492 30 1 1.8804 1.5238 2.1392 31 1 1.8804 1.5238 -2.1392 32 1 0.4722 2.1508 -1.2493 33 1 2.0019 3.0606 -1.2490 34 1 3.8508 0.5684 0.8427 35 1 3.9785 2.1765 0.0902 36 1 5.1406 -1.1779 -1.1483 37 1 3.4568 -1.3612 -0.6008 38 1 3.8176 -1.2225 -2.3383 39 1 3.5645 2.1692 -4.7883 40 1 4.1333 1.1327 -6.9421 41 1 5.4921 -0.9091 -7.0158 42 1 5.1040 -3.7092 -7.4182 43 1 5.7317 -0.8930 -2.7154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531573547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -55.879408 kcal Electronic energy + Delta-G solvation = -24031.208900 eV Core-core repulsion = 20655.629827 eV Total energy + Delta-G solvation = -3375.579074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02218 -38.49177 -37.00378 -35.04007 -33.63020 -32.75458 -29.98514 -29.80363 -27.53231 -27.38830 -26.58611 -25.43519 -25.23425 -21.93561 -20.82234 -19.96525 -19.09395 -17.31435 -16.55081 -15.94746 -15.73411 -15.61536 -15.30872 -14.89081 -14.78010 -14.42240 -13.72304 -13.31028 -13.09629 -13.02946 -12.67480 -12.48965 -12.41452 -12.29160 -11.95448 -11.89903 -11.66411 -11.55548 -11.52698 -11.21792 -11.16271 -10.98034 -10.67202 -10.56925 -10.47794 -10.20629 -9.55451 -9.49967 -9.25463 -9.00161 -8.21289 -7.57557 -7.41230 -6.72831 -4.44267 2.31427 2.75523 3.06940 3.10171 3.13663 3.42532 3.68625 3.83077 3.94320 4.63418 4.78146 4.91640 4.99619 5.24584 5.30209 5.36091 5.48585 5.55058 5.57802 5.65619 5.72078 5.74892 5.81959 5.85891 5.99138 6.04054 6.05866 6.23066 6.38654 6.42196 6.45601 6.78072 6.90994 6.93335 7.04273 7.20293 7.25757 7.38916 7.64051 7.81413 7.94261 7.97687 8.12413 8.52875 8.79029 8.82853 8.86424 10.23364 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.004224 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.566117 B = 6626.638329 C = 7105.039528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.171 4.171 6 C 0.132 3.868 7 N -0.609 5.609 8 C 0.081 3.919 9 C 0.568 3.432 10 O -0.556 6.556 11 C -0.118 4.118 12 C -0.173 4.173 13 C -0.118 4.118 14 C -0.128 4.128 15 C 0.101 3.899 16 C -0.469 4.469 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.809 5.809 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.187 4.187 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.280 0.720 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 3.010 10.935 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.055 3.945 4 C -0.232 4.232 5 C -0.228 4.228 6 C 0.009 3.991 7 N -0.341 5.341 8 C -0.062 4.062 9 C 0.361 3.639 10 O -0.436 6.436 11 C -0.121 4.121 12 C -0.193 4.193 13 C -0.137 4.137 14 C -0.148 4.148 15 C 0.099 3.901 16 C -0.499 4.499 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.436 5.436 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.206 4.206 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.627 3.338 10.793 13.098 hybrid contribution 0.092 -0.622 -0.186 0.655 sum -6.535 2.717 10.607 12.751 Atomic orbital electron populations 1.22735 0.82062 1.02323 0.99853 1.87976 1.19088 1.27226 1.94988 1.22028 0.94412 0.83501 0.94592 1.22349 1.01851 1.01074 0.97971 1.22378 1.00420 1.01614 0.98407 1.21398 0.90732 1.00178 0.86834 1.47626 1.67205 1.07763 1.11482 1.22164 1.00659 0.78978 1.04361 1.18908 0.74801 0.86202 0.84026 1.90648 1.53787 1.14289 1.84829 1.19286 1.03847 0.97706 0.91262 1.20385 1.06581 1.00943 0.91391 1.20678 1.00146 0.97069 0.95787 1.21527 0.99977 0.94109 0.99185 1.17553 0.90558 0.91764 0.90212 1.19469 1.17317 1.02275 1.10862 0.90490 1.25825 0.94773 0.99300 0.94201 1.69753 1.24352 1.34271 1.15178 0.86295 0.81315 0.80768 0.78126 1.19468 1.20297 1.18674 1.21653 1.03826 0.97136 0.98024 0.89980 0.94229 0.93930 0.91267 0.92093 0.91772 0.91480 0.93079 0.90829 0.90202 0.88645 0.92794 0.91306 0.89361 0.88618 0.88680 0.86224 0.90960 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.21 101.05 1.03 1.32 16 2 O -0.37 -5.12 9.28 -35.23 -0.33 -5.44 16 3 C 0.10 1.25 0.91 -90.62 -0.08 1.17 16 4 C -0.17 -1.77 8.25 37.16 0.31 -1.46 16 5 C -0.17 -2.52 6.96 37.16 0.26 -2.26 16 6 C 0.13 1.88 4.77 -4.04 -0.02 1.86 16 7 N -0.61 -10.50 2.53 -182.67 -0.46 -10.96 16 8 C 0.08 1.32 8.63 59.85 0.52 1.83 16 9 C 0.57 11.76 5.51 -12.31 -0.07 11.70 16 10 O -0.56 -12.35 14.98 5.33 0.08 -12.27 16 11 C -0.12 -2.68 5.28 -105.04 -0.55 -3.24 16 12 C -0.17 -3.97 9.62 -38.92 -0.37 -4.34 16 13 C -0.12 -2.73 10.01 -39.73 -0.40 -3.13 16 14 C -0.13 -3.22 8.63 -38.81 -0.33 -3.56 16 15 C 0.10 2.57 5.51 -106.87 -0.59 1.99 16 16 C -0.47 -11.87 9.04 -37.73 -0.34 -12.21 16 17 H 0.08 1.87 7.86 -52.48 -0.41 1.46 16 18 C 0.07 1.82 5.27 -17.34 -0.09 1.73 16 19 N -0.81 -20.34 10.99 55.55 0.61 -19.73 16 20 Si 0.91 18.25 29.57 -169.99 -5.03 13.23 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.19 -4.32 7.31 -38.44 -0.28 -4.61 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 27 H 0.04 0.47 6.42 -51.93 -0.33 0.14 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.20 6.28 -51.93 -0.33 0.87 16 32 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 33 H 0.07 1.14 7.56 -51.93 -0.39 0.74 16 34 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.10 1.39 7.36 -51.93 -0.38 1.00 16 36 H 0.05 0.83 6.79 -51.93 -0.35 0.48 16 37 H 0.07 1.00 7.23 -51.93 -0.38 0.62 16 38 H 0.09 1.65 5.87 -51.93 -0.30 1.35 16 39 H 0.10 2.10 8.03 -52.49 -0.42 1.68 16 40 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.12 3.09 6.43 -52.48 -0.34 2.75 16 42 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 43 H 0.11 2.34 5.14 -52.49 -0.27 2.07 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -28.24 337.89 -7.22 -35.46 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.17 Total: 7.85 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.02 Total: -13.22 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.15 Total: -30.69 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.25 Total: -17.72 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.24 -7.22 -35.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531573547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.422 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds