Wall clock time and date at job start Tue Mar 31 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 114.00430 * 2 1 4 4 C 1.53001 * 109.46854 * 60.00039 * 3 2 1 5 5 C 1.52998 * 109.46770 * 300.00177 * 3 2 1 6 6 C 1.52997 * 109.47323 * 179.97438 * 3 2 1 7 7 N 1.46503 * 109.47299 * 64.99842 * 6 3 2 8 8 C 1.46503 * 120.00082 * 270.00396 * 7 6 3 9 9 C 1.34777 * 119.99578 * 89.99381 * 7 6 3 10 10 O 1.21545 * 120.00309 * 4.60123 * 9 7 6 11 11 C 1.47888 * 120.00005 * 184.59255 * 9 7 6 12 12 C 1.39920 * 120.02509 * 142.20746 * 11 9 7 13 13 C 1.38330 * 120.35435 * 180.02562 * 12 11 9 14 14 C 1.37745 * 120.41522 * 359.97438 * 13 12 11 15 15 C 1.40748 * 120.04167 * 359.97438 * 14 13 12 16 16 C 1.41443 * 120.17770 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99826 * 147.27382 * 16 15 14 18 18 C 1.39932 * 120.00047 * 327.27512 * 16 15 14 19 19 N 1.30833 * 120.00391 * 351.64553 * 18 16 15 20 20 Si 1.86804 * 119.99870 * 171.64852 * 18 16 15 21 21 H 1.48497 * 109.47200 * 84.99139 * 20 18 16 22 22 H 1.48498 * 109.47045 * 204.99427 * 20 18 16 23 23 H 1.48501 * 109.47007 * 324.98923 * 20 18 16 24 24 C 1.38993 * 120.02565 * 322.23779 * 11 9 7 25 25 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47187 * 300.00382 * 1 2 3 27 27 H 1.09003 * 109.47272 * 59.99521 * 1 2 3 28 28 H 1.09002 * 109.46484 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46894 * 299.99909 * 4 3 2 30 30 H 1.09000 * 109.47095 * 60.00309 * 4 3 2 31 31 H 1.08999 * 109.47048 * 299.99594 * 5 3 2 32 32 H 1.08999 * 109.47599 * 59.99710 * 5 3 2 33 33 H 1.09005 * 109.46628 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47367 * 304.99920 * 6 3 2 35 35 H 1.09003 * 109.47144 * 184.99815 * 6 3 2 36 36 H 1.09001 * 109.46635 * 264.40472 * 8 7 6 37 37 H 1.08994 * 109.46891 * 24.40883 * 8 7 6 38 38 H 1.09004 * 109.46731 * 144.41086 * 8 7 6 39 39 H 1.07997 * 119.82218 * 0.02562 * 12 11 9 40 40 H 1.08001 * 119.79163 * 180.02562 * 13 12 11 41 41 H 1.08005 * 119.97821 * 180.02562 * 14 13 12 42 42 H 0.96989 * 119.99844 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.20459 * 359.69388 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1846 0.0006 7 7 3.9767 0.5638 -1.2509 8 6 4.1062 -0.8927 -1.3403 9 6 4.2633 1.3328 -2.3200 10 8 4.2367 2.5440 -2.2221 11 6 4.6103 0.7029 -3.6122 12 6 4.1629 1.2705 -4.8103 13 6 4.4830 0.6867 -6.0228 14 6 5.2460 -0.4594 -6.0651 15 6 5.7059 -1.0442 -4.8704 16 6 6.4899 -2.2208 -4.9105 17 1 7.2530 -2.3869 -4.1645 18 6 6.2770 -3.1695 -5.9168 19 7 5.2513 -3.0518 -6.7205 20 14 7.4571 -4.6043 -6.1126 21 1 7.0608 -5.7003 -5.1924 22 1 7.4127 -5.0940 -7.5139 23 1 8.8359 -4.1590 -5.7874 24 6 5.3805 -0.4539 -3.6375 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.0019 3.0606 1.2490 29 1 0.4722 2.1508 1.2492 30 1 1.8804 1.5238 2.1392 31 1 1.8804 1.5238 -2.1392 32 1 0.4722 2.1508 -1.2493 33 1 2.0019 3.0606 -1.2490 34 1 3.8508 0.5684 0.8427 35 1 3.9785 2.1765 0.0902 36 1 5.1406 -1.1779 -1.1483 37 1 3.4568 -1.3612 -0.6008 38 1 3.8176 -1.2225 -2.3383 39 1 3.5645 2.1692 -4.7883 40 1 4.1333 1.1327 -6.9421 41 1 5.4921 -0.9091 -7.0158 42 1 5.1040 -3.7092 -7.4182 43 1 5.7317 -0.8930 -2.7154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531573547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:33 Heat of formation + Delta-G solvation = -71.026119 kcal Electronic energy + Delta-G solvation = -24031.865711 eV Core-core repulsion = 20655.629827 eV Total energy + Delta-G solvation = -3376.235884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45267 -39.76005 -38.72476 -36.47432 -35.46170 -33.88911 -31.80343 -31.54149 -28.66651 -28.41989 -27.78351 -27.11828 -26.69383 -23.59515 -22.64100 -21.19883 -20.57315 -18.99263 -17.92146 -17.41589 -17.19056 -16.92739 -16.77084 -16.55513 -15.97122 -15.72651 -15.24143 -14.94184 -14.52741 -14.34724 -14.11894 -13.86618 -13.76330 -13.52682 -13.36441 -13.23199 -12.90416 -12.88757 -12.79781 -12.63524 -12.57129 -12.46679 -12.25573 -12.20147 -11.95123 -11.58910 -11.32998 -11.06455 -10.71929 -10.48338 -9.63081 -9.41558 -9.29082 -8.55846 -6.37298 0.51214 0.94353 1.43391 1.49968 1.56023 1.90858 2.15256 2.26404 2.79164 2.83444 3.64732 3.73244 3.77112 3.94916 4.01153 4.30472 4.42654 4.46004 4.49268 4.52087 4.54250 4.60023 4.66325 4.67764 4.76698 4.85601 4.88506 4.97526 5.00085 5.02772 5.09550 5.16508 5.18431 5.29281 5.34536 5.48621 5.64813 5.80864 5.98455 6.05602 6.22582 6.28692 6.40964 6.62873 6.94441 6.95136 7.21064 8.42138 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.004224 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.566117 B = 6626.638329 C = 7105.039528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.392 6.392 3 C 0.097 3.903 4 C -0.167 4.167 5 C -0.165 4.165 6 C 0.125 3.875 7 N -0.600 5.600 8 C 0.085 3.915 9 C 0.568 3.432 10 O -0.577 6.577 11 C -0.124 4.124 12 C -0.184 4.184 13 C -0.117 4.117 14 C -0.152 4.152 15 C 0.075 3.925 16 C -0.497 4.497 17 H 0.080 0.920 18 C 0.036 3.964 19 N -0.839 5.839 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.260 1.260 24 C -0.184 4.184 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.286 0.714 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 2.379 12.910 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.057 3.943 4 C -0.225 4.225 5 C -0.223 4.223 6 C 0.003 3.997 7 N -0.330 5.330 8 C -0.057 4.057 9 C 0.359 3.641 10 O -0.458 6.458 11 C -0.127 4.127 12 C -0.204 4.204 13 C -0.135 4.135 14 C -0.172 4.172 15 C 0.073 3.927 16 C -0.527 4.527 17 H 0.098 0.902 18 C -0.178 4.178 19 N -0.466 5.466 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.184 1.184 24 C -0.204 4.204 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.988 2.705 12.798 14.831 hybrid contribution 0.102 -0.388 -0.761 0.860 sum -6.887 2.317 12.037 14.060 Atomic orbital electron populations 1.22901 0.80616 1.03368 1.00550 1.87932 1.20708 1.27373 1.95134 1.21977 0.93520 0.83675 0.95159 1.22285 1.02651 1.00972 0.96594 1.22313 1.01415 1.00664 0.97886 1.21704 0.91796 1.00370 0.85855 1.47629 1.65800 1.07958 1.11634 1.22131 1.01739 0.78423 1.03446 1.18601 0.75249 0.86042 0.84244 1.90629 1.55069 1.14935 1.85178 1.19611 1.03100 0.97428 0.92601 1.20592 1.06795 1.01328 0.91652 1.20892 0.99307 0.96385 0.96928 1.21490 1.01768 0.95248 0.98681 1.17901 0.91260 0.92439 0.91089 1.19735 1.18000 1.02957 1.12052 0.90196 1.26653 0.96049 1.01692 0.93366 1.69826 1.25669 1.35422 1.15653 0.85210 0.78870 0.77285 0.78316 1.18634 1.19649 1.18393 1.21797 1.03479 0.97141 0.97977 0.88903 0.92079 0.94605 0.90739 0.90905 0.90311 0.95134 0.91417 0.91912 0.87508 0.88950 0.91770 0.89003 0.92126 0.87846 0.86425 0.87645 0.90369 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.21 113.37 1.16 1.57 16 2 O -0.39 -9.83 9.28 -148.98 -1.38 -11.21 16 3 C 0.10 2.35 0.91 -10.79 -0.01 2.34 16 4 C -0.17 -2.85 8.25 71.98 0.59 -2.26 16 5 C -0.17 -4.76 6.96 71.98 0.50 -4.26 16 6 C 0.13 3.31 4.77 86.38 0.41 3.72 16 7 N -0.60 -20.14 2.53 -850.14 -2.15 -22.29 16 8 C 0.08 2.67 8.63 127.77 1.10 3.77 16 9 C 0.57 23.52 5.51 86.80 0.48 24.00 16 10 O -0.58 -25.70 14.98 -3.86 -0.06 -25.76 16 11 C -0.12 -5.73 5.28 -20.13 -0.11 -5.84 16 12 C -0.18 -8.58 9.62 22.70 0.22 -8.36 16 13 C -0.12 -5.50 10.01 22.17 0.22 -5.28 16 14 C -0.15 -7.88 8.63 22.77 0.20 -7.69 16 15 C 0.08 3.92 5.51 -21.32 -0.12 3.80 16 16 C -0.50 -25.61 9.04 23.47 0.21 -25.40 16 17 H 0.08 3.92 7.86 -2.91 -0.02 3.90 16 18 C 0.04 1.74 5.27 85.25 0.45 2.19 16 19 N -0.84 -42.88 10.99 21.82 0.24 -42.64 16 20 Si 0.98 37.19 29.57 68.60 2.03 39.22 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.18 -8.68 7.31 23.01 0.17 -8.52 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 0.91 6.42 -2.39 -0.02 0.89 16 27 H 0.04 0.73 6.42 -2.39 -0.02 0.71 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.08 6.54 -2.39 -0.02 1.07 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.03 1.08 6.28 -2.39 -0.01 1.07 16 32 H 0.07 1.66 6.54 -2.39 -0.02 1.64 16 33 H 0.06 1.92 7.56 -2.38 -0.02 1.90 16 34 H 0.11 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.09 2.54 7.36 -2.39 -0.02 2.52 16 36 H 0.06 1.89 6.79 -2.39 -0.02 1.88 16 37 H 0.09 2.47 7.23 -2.39 -0.02 2.45 16 38 H 0.06 2.27 5.87 -2.39 -0.01 2.26 16 39 H 0.10 4.60 8.03 -2.91 -0.02 4.58 16 40 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.11 5.68 6.43 -2.91 -0.02 5.66 16 42 H 0.29 13.34 8.30 -92.72 -0.77 12.57 16 43 H 0.13 5.34 5.14 -2.91 -0.01 5.33 16 Total: -1.00 -61.70 337.89 5.17 -56.53 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 1.01 Total: 32.35 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 5.48 Total: -26.20 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.91 Total: -64.93 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.44 Total: -36.97 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -61.70 5.17 -56.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531573547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.494 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds