Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99939 * 2 1 4 4 C 1.52999 * 109.47102 * 60.00032 * 3 2 1 5 5 C 1.52998 * 109.47355 * 299.99898 * 3 2 1 6 6 C 1.53002 * 109.47104 * 180.02562 * 3 2 1 7 7 N 1.46506 * 109.47109 * 64.99936 * 6 3 2 8 8 C 1.46501 * 119.99766 * 270.00255 * 7 6 3 9 9 C 1.34774 * 120.00147 * 89.99987 * 7 6 3 10 10 O 1.21586 * 119.99840 * 355.21643 * 9 7 6 11 11 C 1.47633 * 120.00258 * 175.21336 * 9 7 6 12 12 C 1.40020 * 119.89798 * 334.71434 * 11 9 7 13 13 C 1.36312 * 120.10921 * 180.25525 * 12 11 9 14 14 C 1.40894 * 119.89172 * 359.44937 * 13 12 11 15 15 C 1.41109 * 120.10339 * 180.29768 * 14 13 12 16 16 H 1.08001 * 119.99546 * 154.51394 * 15 14 13 17 17 C 1.40221 * 119.99885 * 334.51933 * 15 14 13 18 18 N 1.30647 * 120.00396 * 343.24906 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 163.25461 * 17 15 14 20 20 H 1.48505 * 109.47427 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47317 * 119.99901 * 19 17 15 22 22 H 1.48504 * 109.47307 * 239.99750 * 19 17 15 23 23 C 1.40891 * 119.79127 * 0.28227 * 14 13 12 24 24 C 1.36315 * 119.89361 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46880 * 300.00061 * 1 2 3 26 26 H 1.08999 * 109.47362 * 59.99729 * 1 2 3 27 27 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46771 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47186 * 299.99773 * 4 3 2 30 30 H 1.09001 * 109.46751 * 60.00324 * 4 3 2 31 31 H 1.09007 * 109.47309 * 300.00589 * 5 3 2 32 32 H 1.09003 * 109.46809 * 59.99637 * 5 3 2 33 33 H 1.08999 * 109.47737 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47139 * 305.00242 * 6 3 2 35 35 H 1.08998 * 109.47166 * 184.99799 * 6 3 2 36 36 H 1.09003 * 109.46697 * 275.88308 * 8 7 6 37 37 H 1.08993 * 109.47687 * 35.88572 * 8 7 6 38 38 H 1.08998 * 109.46873 * 155.89268 * 8 7 6 39 39 H 1.08000 * 119.94205 * 359.97438 * 12 11 9 40 40 H 1.07999 * 120.05556 * 179.72684 * 13 12 11 41 41 H 0.96997 * 120.00015 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.05060 * 180.02562 * 23 14 13 43 43 H 1.07994 * 119.95114 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2528 8 6 4.1052 -0.8921 -1.3428 9 6 4.2615 1.3337 -2.3219 10 8 4.0713 2.5337 -2.2756 11 6 4.8056 0.7193 -3.5491 12 6 5.5093 -0.4887 -3.4720 13 6 6.0180 -1.0571 -4.6017 14 6 5.8247 -0.4329 -5.8500 15 6 6.3439 -1.0206 -7.0231 16 1 5.8856 -0.8139 -7.9790 17 6 7.4548 -1.8729 -6.9477 18 7 8.2063 -1.8737 -5.8790 19 14 7.8604 -3.0071 -8.3755 20 1 6.8622 -2.8162 -9.4584 21 1 9.2167 -2.6894 -8.8903 22 1 7.8244 -4.4177 -7.9128 23 6 5.1111 0.7797 -5.9233 24 6 4.6106 1.3432 -4.7874 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.0025 3.0603 1.2494 29 1 0.4722 2.1508 1.2492 30 1 1.8805 1.5238 2.1392 31 1 1.8804 1.5238 -2.1393 32 1 0.4722 2.1508 -1.2492 33 1 2.0025 3.0604 -1.2495 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1765 0.0889 36 1 5.0784 -1.1948 -0.9564 37 1 3.3180 -1.3639 -0.7548 38 1 4.0156 -1.2011 -2.3842 39 1 5.6531 -0.9686 -2.5152 40 1 6.5644 -1.9866 -4.5407 41 1 8.9745 -2.4636 -5.8268 42 1 4.9601 1.2615 -6.8780 43 1 4.0631 2.2724 -4.8425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534727195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -48.341013 kcal Electronic energy + Delta-G solvation = -23838.904286 eV Core-core repulsion = 20463.652102 eV Total energy + Delta-G solvation = -3375.252184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.92797 -38.43514 -37.01503 -34.93450 -33.89457 -32.71640 -30.21074 -29.47571 -27.64689 -27.32274 -26.58826 -26.22655 -24.69578 -21.55064 -20.92761 -19.92393 -18.86248 -17.48324 -16.65793 -16.03362 -15.93329 -15.64457 -15.36002 -14.89329 -14.33653 -14.24515 -13.74417 -13.24050 -13.06474 -13.02145 -12.61860 -12.47479 -12.41485 -12.23970 -11.90705 -11.86536 -11.72718 -11.51374 -11.38147 -11.33577 -11.15206 -11.09998 -10.79499 -10.61532 -10.46218 -9.97231 -9.52823 -9.45498 -9.30847 -8.82819 -8.12431 -7.61045 -7.47820 -6.97780 -4.55877 2.30513 2.93540 2.97536 3.03025 3.05806 3.59444 3.75792 3.78380 3.91017 4.55407 4.83540 4.98194 5.04806 5.28154 5.36547 5.39089 5.53844 5.56699 5.61747 5.67016 5.72422 5.79064 5.92093 5.93840 6.04998 6.09399 6.13140 6.23612 6.32884 6.34595 6.57652 6.81740 6.87289 6.99656 7.12490 7.17684 7.29024 7.49005 7.66739 7.85202 7.90913 8.10540 8.16557 8.45221 8.68366 8.80204 9.06554 9.94518 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003581 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.151388 B = 7817.518156 C = 8028.423241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.166 4.166 6 C 0.136 3.864 7 N -0.615 5.615 8 C 0.076 3.924 9 C 0.573 3.427 10 O -0.570 6.570 11 C -0.280 4.280 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.775 5.775 19 Si 0.912 3.088 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.238 4.238 24 C -0.026 4.026 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 -0.315 10.205 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.294 6.294 3 C 0.055 3.945 4 C -0.233 4.233 5 C -0.223 4.223 6 C 0.012 3.988 7 N -0.347 5.347 8 C -0.066 4.066 9 C 0.369 3.631 10 O -0.452 6.452 11 C -0.284 4.284 12 C -0.098 4.098 13 C -0.199 4.199 14 C 0.125 3.875 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.398 5.398 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.257 4.257 24 C -0.045 4.045 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.575 0.032 10.327 13.424 hybrid contribution 0.083 -0.365 -0.533 0.652 sum -8.492 -0.333 9.794 12.967 Atomic orbital electron populations 1.22724 0.82211 1.02164 0.99874 1.87961 1.18972 1.27503 1.95005 1.22059 0.94546 0.83302 0.94594 1.22351 1.01755 1.01117 0.98034 1.22373 0.99791 1.01885 0.98292 1.21321 0.90640 0.99871 0.86971 1.47550 1.68233 1.07230 1.11717 1.22317 1.00049 0.79996 1.04287 1.18671 0.75753 0.85801 0.82854 1.90618 1.56161 1.15281 1.83125 1.18874 1.15872 1.01646 0.92005 1.21183 0.96239 0.94001 0.98351 1.21010 1.04934 1.01799 0.92128 1.17796 0.87494 0.88990 0.93225 1.19843 1.10316 1.22143 0.95143 0.89855 1.26068 0.95171 0.96065 0.97288 1.69752 1.11528 1.30579 1.27969 0.86194 0.79178 0.79809 0.81259 1.18142 1.19741 1.19433 1.20699 1.09976 0.98434 0.96625 1.20303 0.95874 0.96627 0.91710 0.94267 0.93947 0.90113 0.91289 0.92191 0.91902 0.91438 0.93600 0.90612 0.90599 0.88952 0.93364 0.91711 0.88816 0.87204 0.86246 0.90391 0.88546 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.21 101.05 1.03 1.32 16 2 O -0.38 -5.12 9.09 -35.23 -0.32 -5.44 16 3 C 0.10 1.28 0.91 -90.62 -0.08 1.20 16 4 C -0.17 -1.83 8.25 37.16 0.31 -1.52 16 5 C -0.17 -2.52 6.81 37.16 0.25 -2.27 16 6 C 0.14 1.99 4.81 -4.04 -0.02 1.97 16 7 N -0.61 -10.70 2.53 -182.77 -0.46 -11.16 16 8 C 0.08 1.19 8.55 59.85 0.51 1.70 16 9 C 0.57 12.13 5.90 -12.43 -0.07 12.05 16 10 O -0.57 -13.03 14.01 5.29 0.07 -12.95 16 11 C -0.28 -6.42 5.50 -104.73 -0.58 -6.99 16 12 C -0.08 -1.77 7.44 -39.61 -0.29 -2.06 16 13 C -0.18 -4.42 8.63 -39.27 -0.34 -4.75 16 14 C 0.13 3.29 5.57 -106.80 -0.59 2.69 16 15 C -0.45 -11.23 9.05 -37.75 -0.34 -11.57 16 16 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.76 5.15 -17.31 -0.09 1.67 16 18 N -0.77 -18.81 10.94 55.56 0.61 -18.21 16 19 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 24 C -0.03 -0.61 9.52 -39.61 -0.38 -0.99 16 25 H 0.04 0.36 6.42 -51.92 -0.33 0.02 16 26 H 0.04 0.46 6.42 -51.93 -0.33 0.13 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.23 6.19 -51.93 -0.32 0.91 16 32 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 33 H 0.07 1.23 7.32 -51.93 -0.38 0.85 16 34 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.09 1.40 7.49 -51.93 -0.39 1.01 16 36 H 0.05 0.69 7.13 -51.93 -0.37 0.32 16 37 H 0.06 0.92 7.03 -51.93 -0.37 0.55 16 38 H 0.09 1.62 5.10 -51.93 -0.26 1.36 16 39 H 0.11 2.15 4.45 -52.49 -0.23 1.92 16 40 H 0.12 2.98 6.18 -52.49 -0.32 2.66 16 41 H 0.28 6.21 8.29 -40.82 -0.34 5.88 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.10 2.18 7.84 -52.49 -0.41 1.77 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -28.18 334.92 -7.21 -35.39 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.06 Total: 8.64 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.07 Total: -13.75 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: 0.15 Total: -29.37 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.25 Total: -18.39 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.18 -7.21 -35.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534727195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds