Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99939 * 2 1 4 4 C 1.52999 * 109.47102 * 60.00032 * 3 2 1 5 5 C 1.52998 * 109.47355 * 299.99898 * 3 2 1 6 6 C 1.53002 * 109.47104 * 180.02562 * 3 2 1 7 7 N 1.46506 * 109.47109 * 64.99936 * 6 3 2 8 8 C 1.46501 * 119.99766 * 270.00255 * 7 6 3 9 9 C 1.34774 * 120.00147 * 89.99987 * 7 6 3 10 10 O 1.21586 * 119.99840 * 355.21643 * 9 7 6 11 11 C 1.47633 * 120.00258 * 175.21336 * 9 7 6 12 12 C 1.40020 * 119.89798 * 334.71434 * 11 9 7 13 13 C 1.36312 * 120.10921 * 180.25525 * 12 11 9 14 14 C 1.40894 * 119.89172 * 359.44937 * 13 12 11 15 15 C 1.41109 * 120.10339 * 180.29768 * 14 13 12 16 16 H 1.08001 * 119.99546 * 154.51394 * 15 14 13 17 17 C 1.40221 * 119.99885 * 334.51933 * 15 14 13 18 18 N 1.30647 * 120.00396 * 343.24906 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 163.25461 * 17 15 14 20 20 H 1.48505 * 109.47427 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47317 * 119.99901 * 19 17 15 22 22 H 1.48504 * 109.47307 * 239.99750 * 19 17 15 23 23 C 1.40891 * 119.79127 * 0.28227 * 14 13 12 24 24 C 1.36315 * 119.89361 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46880 * 300.00061 * 1 2 3 26 26 H 1.08999 * 109.47362 * 59.99729 * 1 2 3 27 27 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46771 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47186 * 299.99773 * 4 3 2 30 30 H 1.09001 * 109.46751 * 60.00324 * 4 3 2 31 31 H 1.09007 * 109.47309 * 300.00589 * 5 3 2 32 32 H 1.09003 * 109.46809 * 59.99637 * 5 3 2 33 33 H 1.08999 * 109.47737 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47139 * 305.00242 * 6 3 2 35 35 H 1.08998 * 109.47166 * 184.99799 * 6 3 2 36 36 H 1.09003 * 109.46697 * 275.88308 * 8 7 6 37 37 H 1.08993 * 109.47687 * 35.88572 * 8 7 6 38 38 H 1.08998 * 109.46873 * 155.89268 * 8 7 6 39 39 H 1.08000 * 119.94205 * 359.97438 * 12 11 9 40 40 H 1.07999 * 120.05556 * 179.72684 * 13 12 11 41 41 H 0.96997 * 120.00015 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.05060 * 180.02562 * 23 14 13 43 43 H 1.07994 * 119.95114 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2528 8 6 4.1052 -0.8921 -1.3428 9 6 4.2615 1.3337 -2.3219 10 8 4.0713 2.5337 -2.2756 11 6 4.8056 0.7193 -3.5491 12 6 5.5093 -0.4887 -3.4720 13 6 6.0180 -1.0571 -4.6017 14 6 5.8247 -0.4329 -5.8500 15 6 6.3439 -1.0206 -7.0231 16 1 5.8856 -0.8139 -7.9790 17 6 7.4548 -1.8729 -6.9477 18 7 8.2063 -1.8737 -5.8790 19 14 7.8604 -3.0071 -8.3755 20 1 6.8622 -2.8162 -9.4584 21 1 9.2167 -2.6894 -8.8903 22 1 7.8244 -4.4177 -7.9128 23 6 5.1111 0.7797 -5.9233 24 6 4.6106 1.3432 -4.7874 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.0025 3.0603 1.2494 29 1 0.4722 2.1508 1.2492 30 1 1.8805 1.5238 2.1392 31 1 1.8804 1.5238 -2.1393 32 1 0.4722 2.1508 -1.2492 33 1 2.0025 3.0604 -1.2495 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1765 0.0889 36 1 5.0784 -1.1948 -0.9564 37 1 3.3180 -1.3639 -0.7548 38 1 4.0156 -1.2011 -2.3842 39 1 5.6531 -0.9686 -2.5152 40 1 6.5644 -1.9866 -4.5407 41 1 8.9745 -2.4636 -5.8268 42 1 4.9601 1.2615 -6.8780 43 1 4.0631 2.2724 -4.8425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534727195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -63.520669 kcal Electronic energy + Delta-G solvation = -23839.562525 eV Core-core repulsion = 20463.652102 eV Total energy + Delta-G solvation = -3375.910424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36706 -39.75101 -38.71561 -36.41154 -35.66502 -33.88517 -31.92600 -31.33762 -28.85733 -28.37627 -27.88582 -27.66188 -26.13195 -23.26148 -22.75894 -21.10714 -20.36123 -19.33364 -18.06131 -17.55860 -17.27538 -16.97368 -16.74001 -16.03493 -15.88188 -15.56609 -15.24599 -14.93837 -14.56338 -14.27898 -14.07960 -13.85190 -13.74569 -13.57673 -13.36913 -13.15540 -13.05290 -12.88186 -12.84577 -12.71774 -12.55778 -12.35588 -12.30274 -12.16457 -11.72311 -11.56516 -11.23294 -11.11311 -10.58737 -10.43569 -9.58147 -9.46954 -9.30910 -8.75626 -6.46007 0.51445 1.15619 1.39524 1.42995 1.55719 2.09642 2.18476 2.25021 2.75310 2.86138 3.68280 3.79789 3.88362 4.03661 4.09306 4.25111 4.43744 4.47831 4.50832 4.54934 4.58435 4.62363 4.68513 4.70272 4.79695 4.88340 4.89520 4.96470 4.99475 5.05320 5.11739 5.18120 5.20486 5.32284 5.35169 5.60638 5.69961 5.84796 5.98663 6.03108 6.25318 6.31741 6.56603 6.58185 6.80511 6.91935 7.43458 8.20057 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003581 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.151388 B = 7817.518156 C = 8028.423241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.391 6.391 3 C 0.098 3.902 4 C -0.168 4.168 5 C -0.159 4.159 6 C 0.129 3.871 7 N -0.607 5.607 8 C 0.075 3.925 9 C 0.572 3.428 10 O -0.593 6.593 11 C -0.289 4.289 12 C -0.068 4.068 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.479 4.479 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.803 5.803 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.253 4.253 24 C -0.036 4.036 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.296 0.704 42 H 0.101 0.899 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -1.498 11.859 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.058 3.942 4 C -0.225 4.225 5 C -0.217 4.217 6 C 0.006 3.994 7 N -0.338 5.338 8 C -0.067 4.067 9 C 0.366 3.634 10 O -0.477 6.477 11 C -0.293 4.293 12 C -0.086 4.086 13 C -0.218 4.218 14 C 0.098 3.902 15 C -0.507 4.507 16 H 0.100 0.900 17 C -0.180 4.180 18 N -0.427 5.427 19 Si 0.807 3.193 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.273 4.273 24 C -0.055 4.055 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.047 -1.159 12.021 15.090 hybrid contribution 0.148 0.036 -0.946 0.958 sum -8.899 -1.123 11.076 14.252 Atomic orbital electron populations 1.22901 0.80677 1.03398 1.00474 1.87917 1.20649 1.27356 1.95130 1.21965 0.93646 0.83594 0.94993 1.22286 1.02575 1.00926 0.96759 1.22284 1.00775 1.00721 0.97914 1.21597 0.91751 0.99919 0.86139 1.47540 1.66828 1.07784 1.11648 1.22363 1.01883 0.78857 1.03556 1.18416 0.75974 0.85657 0.83321 1.90600 1.57234 1.16221 1.83656 1.19210 1.15548 1.01765 0.92777 1.21438 0.94723 0.93482 0.99003 1.21033 1.06065 1.02008 0.92666 1.18137 0.88258 0.89617 0.94169 1.20090 1.11601 1.23942 0.95031 0.89963 1.26898 0.94266 0.96774 1.00079 1.69773 1.12015 1.31172 1.29717 0.85075 0.78924 0.77712 0.77559 1.18136 1.18963 1.18349 1.20832 1.10617 0.98623 0.97201 1.20451 0.96034 0.96892 0.92169 0.92288 0.94653 0.88694 0.90999 0.90958 0.90362 0.95052 0.91882 0.92166 0.87808 0.89668 0.91458 0.89650 0.90771 0.84306 0.86926 0.89325 0.88078 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.21 113.37 1.16 1.56 16 2 O -0.39 -9.65 9.09 -148.98 -1.35 -11.00 16 3 C 0.10 2.43 0.91 -10.79 -0.01 2.42 16 4 C -0.17 -2.99 8.25 71.98 0.59 -2.40 16 5 C -0.16 -4.76 6.81 71.98 0.49 -4.27 16 6 C 0.13 3.50 4.81 86.38 0.42 3.91 16 7 N -0.61 -20.38 2.53 -850.43 -2.15 -22.53 16 8 C 0.08 2.20 8.55 127.77 1.09 3.29 16 9 C 0.57 24.25 5.90 86.72 0.51 24.77 16 10 O -0.59 -27.49 14.01 -3.99 -0.06 -27.54 16 11 C -0.29 -13.46 5.50 -19.93 -0.11 -13.57 16 12 C -0.07 -3.06 7.44 22.25 0.17 -2.90 16 13 C -0.20 -9.99 8.63 22.47 0.19 -9.79 16 14 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 15 C -0.48 -24.74 9.05 23.46 0.21 -24.53 16 16 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 17 C 0.04 1.81 5.15 85.35 0.44 2.25 16 18 N -0.80 -39.23 10.94 21.87 0.24 -38.99 16 19 Si 0.99 35.50 29.59 68.60 2.03 37.53 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 23 C -0.25 -12.87 9.73 22.47 0.22 -12.65 16 24 C -0.04 -1.78 9.52 22.25 0.21 -1.57 16 25 H 0.06 0.87 6.42 -2.38 -0.02 0.86 16 26 H 0.03 0.70 6.42 -2.39 -0.02 0.69 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.12 6.54 -2.39 -0.02 1.11 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.03 1.14 6.19 -2.38 -0.01 1.13 16 32 H 0.06 1.60 6.54 -2.39 -0.02 1.58 16 33 H 0.06 1.96 7.32 -2.39 -0.02 1.94 16 34 H 0.10 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.09 2.46 7.49 -2.39 -0.02 2.44 16 36 H 0.07 1.74 7.13 -2.39 -0.02 1.72 16 37 H 0.08 2.18 7.03 -2.39 -0.02 2.17 16 38 H 0.07 2.50 5.10 -2.39 -0.01 2.48 16 39 H 0.14 5.29 4.45 -2.91 -0.01 5.27 16 40 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 41 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 42 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.10 4.67 7.84 -2.91 -0.02 4.65 16 Total: -1.00 -62.17 334.92 5.19 -56.98 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 1.02 Total: 33.78 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.47 Total: -28.22 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -1.91 Total: -61.52 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.41 Total: -38.55 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -62.17 5.19 -56.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534727195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.540 kcal (2) G-P(sol) polarization free energy of solvation -62.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds