Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99945 * 2 1 4 4 C 1.53001 * 109.46813 * 125.00213 * 3 2 1 5 5 N 1.46898 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99861 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46996 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46960 * 60.00222 * 7 6 5 9 9 O 1.42895 * 109.47770 * 299.99977 * 7 6 5 10 10 C 1.53005 * 109.47159 * 179.97438 * 7 6 5 11 11 O 1.42897 * 109.47198 * 185.00313 * 10 7 6 12 12 C 1.35683 * 116.99685 * 180.02562 * 11 10 7 13 13 C 1.39305 * 119.81261 * 180.02562 * 12 11 10 14 14 C 1.36441 * 120.18225 * 179.72110 * 13 12 11 15 15 C 1.40834 * 119.80994 * 0.26831 * 14 13 12 16 16 C 1.41215 * 120.17646 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00196 * 204.54801 * 16 15 14 18 18 C 1.39888 * 120.00093 * 24.55741 * 16 15 14 19 19 N 1.30881 * 120.00110 * 17.92429 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.92928 * 18 16 15 21 21 H 1.48503 * 109.47208 * 59.99802 * 20 18 16 22 22 H 1.48511 * 109.47031 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47221 * 299.99522 * 20 18 16 24 24 C 1.40829 * 119.64178 * 0.02562 * 15 14 13 25 25 C 1.36431 * 119.81319 * 359.97438 * 24 15 14 26 26 H 1.08005 * 119.99704 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00374 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99704 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46998 * 5.00124 * 3 2 1 30 30 H 1.09000 * 109.46624 * 244.99730 * 3 2 1 31 31 H 1.09001 * 109.47251 * 59.99546 * 4 3 2 32 32 H 1.09001 * 109.46718 * 299.99542 * 4 3 2 33 33 H 1.00898 * 111.00380 * 56.04488 * 5 4 3 34 34 H 1.09003 * 109.47085 * 59.99862 * 6 5 4 35 35 H 1.08999 * 109.47089 * 299.99746 * 6 5 4 36 36 H 0.96703 * 113.99988 * 300.00629 * 9 7 6 37 37 H 1.09005 * 109.46782 * 65.00294 * 10 7 6 38 38 H 1.09002 * 109.47300 * 305.00838 * 10 7 6 39 39 H 1.08000 * 119.91135 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.09455 * 180.29138 * 14 13 12 41 41 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.09144 * 180.02562 * 24 15 14 43 43 H 1.08003 * 119.90891 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7700 2.6050 1.1812 6 6 4.7141 2.6678 2.3050 7 6 5.4594 4.0035 2.2708 8 1 4.7433 4.8213 2.3517 9 8 6.1760 4.1179 1.0398 10 6 6.4423 4.0692 3.4416 11 8 7.0536 5.3603 3.4784 12 6 7.9583 5.5855 4.4642 13 6 8.5894 6.8241 4.5553 14 6 9.4962 7.0606 5.5469 15 6 9.7976 6.0465 6.4765 16 6 10.7345 6.2831 7.5063 17 1 11.2610 5.4553 7.9580 18 6 10.9806 7.5896 7.9414 19 7 10.1258 8.5423 7.6682 20 14 12.5295 7.9745 8.9121 21 1 13.7226 7.6379 8.0946 22 1 12.5544 9.4201 9.2517 23 1 12.5430 7.1719 10.1615 24 6 9.1597 4.7952 6.3735 25 6 8.2554 4.5750 5.3760 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0921 32 1 2.4772 1.2356 2.1130 33 1 3.1355 3.3893 1.1982 34 1 5.4304 1.8502 2.2239 35 1 4.1676 2.5802 3.2440 36 1 6.8321 3.4213 0.9005 37 1 7.2108 3.3068 3.3140 38 1 5.9077 3.8935 4.3751 39 1 8.3573 7.6006 3.8415 40 1 9.9812 8.0229 5.6190 41 1 10.2966 9.4483 7.9697 42 1 9.3851 4.0125 7.0826 43 1 7.7649 3.6161 5.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594718501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -58.475401 kcal Electronic energy + Delta-G solvation = -21736.115524 eV Core-core repulsion = 18360.423879 eV Total energy + Delta-G solvation = -3375.691644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.10967 -37.95643 -36.71373 -35.93876 -34.30093 -33.31379 -30.92484 -29.77162 -29.07613 -28.32500 -25.27740 -24.37172 -22.50250 -22.00169 -20.68364 -20.55251 -20.12915 -17.35747 -17.19447 -16.76604 -16.24447 -15.81758 -15.46299 -15.20170 -15.13064 -14.36032 -14.11703 -13.94135 -13.70314 -13.54702 -12.97887 -12.85225 -12.61327 -12.26490 -12.14357 -12.06444 -11.75634 -11.42881 -11.37025 -11.30444 -11.12323 -10.96990 -10.79031 -10.61586 -10.00509 -9.91610 -9.83645 -9.68682 -9.33144 -9.01698 -8.70378 -7.64343 -7.03194 -6.72196 -4.25556 1.88795 2.79096 2.95079 3.08005 3.10375 3.22486 3.52538 3.95107 4.19013 4.46186 4.54239 4.62254 4.78656 4.84769 4.91083 4.98179 5.01820 5.20838 5.27789 5.29667 5.43370 5.46195 5.62062 5.65585 5.67280 5.73308 6.02175 6.05823 6.22889 6.23774 6.37047 6.65348 6.73620 6.97676 7.05235 7.11217 7.18581 7.46460 7.55689 7.77004 7.79353 8.00368 8.20560 8.45337 8.65287 8.89852 8.98794 10.22225 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054003 B = 0.002077 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.363543 B =13479.577140 C =13711.062211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.093 4.093 4 C 0.062 3.938 5 N -0.680 5.680 6 C 0.030 3.970 7 C 0.115 3.885 8 H 0.103 0.897 9 O -0.540 6.540 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.087 3.913 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.799 5.799 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.199 4.199 25 C -0.168 4.168 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.343 0.657 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.371 0.629 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.281 0.719 42 H 0.094 0.906 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -12.000 -10.338 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.067 4.067 5 N -0.311 5.311 6 C -0.100 4.100 7 C 0.055 3.945 8 H 0.120 0.880 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.138 4.138 14 C -0.152 4.152 15 C 0.085 3.915 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.425 5.425 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.218 4.218 25 C -0.187 4.187 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.161 0.839 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.218 0.782 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.813 -11.300 -10.939 20.286 hybrid contribution 0.318 -0.470 1.663 1.757 sum -12.495 -11.770 -9.276 19.512 Atomic orbital electron populations 1.23874 0.95979 1.01870 1.01548 1.22930 0.96010 0.98499 0.99565 1.20735 0.97722 0.95175 0.99458 1.21919 0.95399 0.92645 0.96714 1.60333 1.21405 1.04313 1.45052 1.22568 0.96326 0.98655 0.92429 1.21838 0.92602 0.96554 0.83552 0.87952 1.86625 1.55421 1.54256 1.38074 1.23106 0.95778 0.86683 0.98333 1.85889 1.55621 1.31351 1.50413 1.18624 0.97773 0.95833 0.93007 1.19847 0.99654 0.93917 1.00367 1.20984 0.99642 1.00795 0.93825 1.17597 0.91205 0.90793 0.91883 1.19426 1.20345 0.92831 1.16813 0.90601 1.25877 0.96822 0.96043 0.95441 1.69827 1.32446 1.02572 1.37635 0.86381 0.82341 0.77819 0.80221 1.18877 1.20381 1.19120 1.20549 1.01684 0.98998 1.00610 1.20391 1.02812 0.96942 0.98588 0.88606 0.88527 0.87327 0.91578 0.89884 0.90879 0.95238 0.83898 0.90351 0.94026 0.78229 0.92881 0.92580 0.88412 0.85651 0.90854 0.88789 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 14.32 29.01 0.42 -0.81 16 2 C -0.15 -1.01 9.52 -36.03 -0.34 -1.35 16 3 C -0.09 -0.66 5.92 -27.88 -0.17 -0.83 16 4 C 0.06 0.49 5.67 -3.82 -0.02 0.47 16 5 N -0.68 -6.27 6.37 -113.78 -0.72 -7.00 16 6 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 7 C 0.11 1.43 3.45 -26.73 -0.09 1.34 16 8 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 9 O -0.54 -7.47 13.17 -40.06 -0.53 -8.00 16 10 C 0.04 0.59 4.37 37.16 0.16 0.75 16 11 O -0.32 -6.55 10.09 -23.58 -0.24 -6.79 16 12 C -0.01 -0.21 6.71 -38.79 -0.26 -0.48 16 13 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 14 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 15 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 16 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16 17 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 18 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 19 N -0.80 -20.77 10.96 55.54 0.61 -20.16 16 20 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 25 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 26 H 0.10 0.57 7.84 -52.48 -0.41 0.15 16 27 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 29 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.34 3.01 8.73 -39.29 -0.34 2.67 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.37 3.99 9.05 45.56 0.41 4.40 16 37 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 38 H 0.06 0.82 7.66 -51.93 -0.40 0.43 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 41 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -29.57 362.24 -9.25 -38.82 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.97 Total: 10.38 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.83 Total: -26.42 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: -0.12 Total: -27.16 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.77 Total: -14.79 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.57 -9.25 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594718501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.651 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds