Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99945 * 2 1 4 4 C 1.53001 * 109.46813 * 125.00213 * 3 2 1 5 5 N 1.46898 * 109.46688 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99861 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46996 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46960 * 60.00222 * 7 6 5 9 9 O 1.42895 * 109.47770 * 299.99977 * 7 6 5 10 10 C 1.53005 * 109.47159 * 179.97438 * 7 6 5 11 11 O 1.42897 * 109.47198 * 185.00313 * 10 7 6 12 12 C 1.35683 * 116.99685 * 180.02562 * 11 10 7 13 13 C 1.39305 * 119.81261 * 180.02562 * 12 11 10 14 14 C 1.36441 * 120.18225 * 179.72110 * 13 12 11 15 15 C 1.40834 * 119.80994 * 0.26831 * 14 13 12 16 16 C 1.41215 * 120.17646 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00196 * 204.54801 * 16 15 14 18 18 C 1.39888 * 120.00093 * 24.55741 * 16 15 14 19 19 N 1.30881 * 120.00110 * 17.92429 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.92928 * 18 16 15 21 21 H 1.48503 * 109.47208 * 59.99802 * 20 18 16 22 22 H 1.48511 * 109.47031 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47221 * 299.99522 * 20 18 16 24 24 C 1.40829 * 119.64178 * 0.02562 * 15 14 13 25 25 C 1.36431 * 119.81319 * 359.97438 * 24 15 14 26 26 H 1.08005 * 119.99704 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00374 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99704 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46998 * 5.00124 * 3 2 1 30 30 H 1.09000 * 109.46624 * 244.99730 * 3 2 1 31 31 H 1.09001 * 109.47251 * 59.99546 * 4 3 2 32 32 H 1.09001 * 109.46718 * 299.99542 * 4 3 2 33 33 H 1.00898 * 111.00380 * 56.04488 * 5 4 3 34 34 H 1.09003 * 109.47085 * 59.99862 * 6 5 4 35 35 H 1.08999 * 109.47089 * 299.99746 * 6 5 4 36 36 H 0.96703 * 113.99988 * 300.00629 * 9 7 6 37 37 H 1.09005 * 109.46782 * 65.00294 * 10 7 6 38 38 H 1.09002 * 109.47300 * 305.00838 * 10 7 6 39 39 H 1.08000 * 119.91135 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.09455 * 180.29138 * 14 13 12 41 41 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.09144 * 180.02562 * 24 15 14 43 43 H 1.08003 * 119.90891 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7700 2.6050 1.1812 6 6 4.7141 2.6678 2.3050 7 6 5.4594 4.0035 2.2708 8 1 4.7433 4.8213 2.3517 9 8 6.1760 4.1179 1.0398 10 6 6.4423 4.0692 3.4416 11 8 7.0536 5.3603 3.4784 12 6 7.9583 5.5855 4.4642 13 6 8.5894 6.8241 4.5553 14 6 9.4962 7.0606 5.5469 15 6 9.7976 6.0465 6.4765 16 6 10.7345 6.2831 7.5063 17 1 11.2610 5.4553 7.9580 18 6 10.9806 7.5896 7.9414 19 7 10.1258 8.5423 7.6682 20 14 12.5295 7.9745 8.9121 21 1 13.7226 7.6379 8.0946 22 1 12.5544 9.4201 9.2517 23 1 12.5430 7.1719 10.1615 24 6 9.1597 4.7952 6.3735 25 6 8.2554 4.5750 5.3760 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0921 32 1 2.4772 1.2356 2.1130 33 1 3.1355 3.3893 1.1982 34 1 5.4304 1.8502 2.2239 35 1 4.1676 2.5802 3.2440 36 1 6.8321 3.4213 0.9005 37 1 7.2108 3.3068 3.3140 38 1 5.9077 3.8935 4.3751 39 1 8.3573 7.6006 3.8415 40 1 9.9812 8.0229 5.6190 41 1 10.2966 9.4483 7.9697 42 1 9.3851 4.0125 7.0826 43 1 7.7649 3.6161 5.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594718501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -77.823830 kcal Electronic energy + Delta-G solvation = -21736.954534 eV Core-core repulsion = 18360.423879 eV Total energy + Delta-G solvation = -3376.530655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65568 -39.13614 -37.97118 -37.08789 -35.18472 -34.96309 -32.11035 -31.38856 -30.87127 -29.26982 -26.83587 -25.68059 -23.30342 -23.13177 -22.46085 -22.13182 -20.64237 -19.25438 -18.71896 -17.80895 -17.36960 -17.05130 -16.65321 -16.28166 -15.94441 -15.75766 -15.54514 -15.43432 -14.85408 -14.45618 -14.33294 -14.06347 -13.89763 -13.70366 -13.45714 -13.35318 -13.01089 -12.79270 -12.76769 -12.60189 -12.37537 -11.93955 -11.91645 -11.86844 -11.70374 -11.58886 -11.21256 -10.92588 -10.87153 -10.21690 -9.56649 -9.39502 -8.92898 -8.59572 -6.22927 0.95242 1.02329 1.39782 1.39896 1.50874 1.55014 2.22815 2.39272 2.72646 3.23675 3.55472 3.70032 3.88282 3.95732 4.04914 4.07164 4.26577 4.27594 4.28676 4.36016 4.43725 4.44974 4.48088 4.65246 4.70834 4.86600 4.93671 5.02705 5.07286 5.12102 5.17437 5.21570 5.28101 5.58290 5.64163 5.75633 5.86600 5.88115 6.00130 6.05430 6.26121 6.36754 6.56374 6.80154 6.89307 6.94838 7.10098 8.36871 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054003 B = 0.002077 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.363543 B =13479.577140 C =13711.062211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.089 4.089 4 C 0.066 3.934 5 N -0.689 5.689 6 C 0.041 3.959 7 C 0.123 3.877 8 H 0.094 0.906 9 O -0.559 6.559 10 C 0.029 3.971 11 O -0.331 6.331 12 C 0.000 4.000 13 C -0.135 4.135 14 C -0.152 4.152 15 C 0.053 3.947 16 C -0.500 4.500 17 H 0.077 0.923 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.207 4.207 25 C -0.165 4.165 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.344 0.656 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.384 0.616 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.287 0.713 42 H 0.106 0.894 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 -13.538 -10.404 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.179 4.179 3 C -0.126 4.126 4 C -0.063 4.063 5 N -0.320 5.320 6 C -0.089 4.089 7 C 0.063 3.937 8 H 0.112 0.888 9 O -0.365 6.365 10 C -0.047 4.047 11 O -0.247 6.247 12 C -0.044 4.044 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.051 3.949 16 C -0.529 4.529 17 H 0.095 0.905 18 C -0.181 4.181 19 N -0.458 5.458 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.227 4.227 25 C -0.184 4.184 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.163 0.837 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.393 -12.863 -11.023 21.595 hybrid contribution 0.336 -0.077 1.551 1.589 sum -13.057 -12.940 -9.472 20.679 Atomic orbital electron populations 1.24031 0.96010 1.02491 1.00839 1.22990 0.96228 0.98518 1.00184 1.20675 0.97551 0.95566 0.98851 1.21909 0.95405 0.91914 0.97037 1.60330 1.21771 1.05013 1.44910 1.22426 0.96432 0.96954 0.93088 1.21780 0.91768 0.98047 0.82060 0.88766 1.86594 1.56089 1.55351 1.38505 1.23505 0.96516 0.84530 1.00155 1.85881 1.54977 1.34553 1.49300 1.18695 0.97290 0.95267 0.93159 1.20015 0.99812 0.95228 1.00318 1.20899 1.00896 1.00442 0.94953 1.17968 0.92348 0.92006 0.92566 1.19693 1.21563 0.93901 1.17787 0.90493 1.26750 0.99713 0.95359 0.96264 1.69888 1.34124 1.03148 1.38671 0.85249 0.77743 0.77987 0.78682 1.18568 1.19361 1.18324 1.20804 1.01846 0.98582 1.01476 1.20702 1.01977 0.98331 0.97359 0.88444 0.87558 0.86674 0.91536 0.90566 0.90692 0.95034 0.83747 0.89356 0.93066 0.76782 0.91492 0.91482 0.87590 0.87261 0.90202 0.87548 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 67.78 0.97 -1.19 16 2 C -0.16 -1.89 9.52 25.64 0.24 -1.64 16 3 C -0.09 -1.13 5.92 29.85 0.18 -0.95 16 4 C 0.07 0.90 5.67 86.30 0.49 1.39 16 5 N -0.69 -11.33 6.37 -513.88 -3.27 -14.60 16 6 C 0.04 0.68 5.35 86.30 0.46 1.14 16 7 C 0.12 2.84 3.45 30.59 0.11 2.94 16 8 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 9 O -0.56 -14.52 13.17 -144.36 -1.90 -16.42 16 10 C 0.03 0.82 4.37 71.98 0.31 1.14 16 11 O -0.33 -13.20 10.09 -85.39 -0.86 -14.06 16 12 C 0.00 -0.01 6.71 22.79 0.15 0.14 16 13 C -0.13 -6.74 9.92 22.11 0.22 -6.52 16 14 C -0.15 -8.29 8.64 22.49 0.19 -8.10 16 15 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 16 C -0.50 -27.19 9.04 23.40 0.21 -26.97 16 17 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 18 C 0.03 1.69 5.13 85.23 0.44 2.12 16 19 N -0.83 -44.27 10.96 21.82 0.24 -44.03 16 20 Si 0.98 38.53 29.60 68.60 2.03 40.56 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 25 C -0.17 -7.22 8.96 22.11 0.20 -7.02 16 26 H 0.10 1.01 7.84 -2.91 -0.02 0.99 16 27 H 0.11 0.94 8.06 -2.91 -0.02 0.91 16 28 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.07 0.83 7.79 -2.39 -0.02 0.81 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.34 5.48 8.73 -89.70 -0.78 4.70 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.38 7.50 9.05 -74.06 -0.67 6.83 16 37 H 0.07 1.72 7.63 -2.38 -0.02 1.70 16 38 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.11 6.17 6.16 -2.91 -0.02 6.16 16 41 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 42 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 Total: -1.00 -63.80 362.24 0.06 -63.74 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.45 Total: 35.47 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 4.28 Total: -50.66 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -3.03 Total: -58.63 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -2.76 Total: -30.49 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -63.80 0.06 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594718501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.081 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds