Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00025 * 2 1 4 4 C 1.53003 * 109.47419 * 124.99563 * 3 2 1 5 5 N 1.46900 * 109.47209 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99651 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46696 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46985 * 305.00301 * 7 6 5 9 9 O 1.42900 * 109.47007 * 65.00136 * 7 6 5 10 10 C 1.52999 * 109.47031 * 185.00089 * 7 6 5 11 11 O 1.42897 * 109.47433 * 175.00071 * 10 7 6 12 12 C 1.35669 * 117.00243 * 179.97438 * 11 10 7 13 13 C 1.39311 * 119.81866 * 359.72733 * 12 11 10 14 14 C 1.36438 * 120.18358 * 179.75745 * 13 12 11 15 15 C 1.40830 * 119.81289 * 0.51455 * 14 13 12 16 16 C 1.41218 * 120.17970 * 179.72046 * 15 14 13 17 17 H 1.07998 * 120.00072 * 24.56905 * 16 15 14 18 18 C 1.39890 * 120.00080 * 204.56816 * 16 15 14 19 19 N 1.30886 * 119.99515 * 17.93469 * 18 16 15 20 20 Si 1.86792 * 120.00234 * 197.93138 * 18 16 15 21 21 H 1.48501 * 109.47005 * 90.00069 * 20 18 16 22 22 H 1.48502 * 109.47551 * 210.00116 * 20 18 16 23 23 H 1.48500 * 109.47275 * 330.00023 * 20 18 16 24 24 C 1.40828 * 119.64080 * 359.73527 * 15 14 13 25 25 C 1.36439 * 119.81623 * 0.02562 * 24 15 14 26 26 H 1.08003 * 120.00282 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00075 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00193 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47425 * 4.99389 * 3 2 1 30 30 H 1.09002 * 109.46915 * 244.99553 * 3 2 1 31 31 H 1.09006 * 109.46431 * 59.99933 * 4 3 2 32 32 H 1.08996 * 109.47321 * 300.00211 * 4 3 2 33 33 H 1.00890 * 111.00186 * 303.95830 * 5 4 3 34 34 H 1.09000 * 109.47415 * 60.00746 * 6 5 4 35 35 H 1.09004 * 109.47124 * 299.99947 * 6 5 4 36 36 H 0.96693 * 114.00269 * 60.00236 * 9 7 6 37 37 H 1.09003 * 109.47247 * 54.99860 * 10 7 6 38 38 H 1.09009 * 109.47007 * 295.00024 * 10 7 6 39 39 H 1.08000 * 119.90560 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09115 * 180.25228 * 14 13 12 41 41 H 0.96999 * 119.99379 * 180.02562 * 19 18 16 42 42 H 1.08008 * 120.09419 * 179.97438 * 24 15 14 43 43 H 1.07990 * 119.91036 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 7 3.7699 2.6052 1.1813 6 6 4.7147 2.6675 2.3044 7 6 5.4591 4.0038 2.2709 8 1 5.9321 4.1319 1.2973 9 8 4.5344 5.0700 2.4951 10 6 6.5296 4.0188 3.3640 11 8 7.3012 5.2169 3.2587 12 6 8.2998 5.3878 4.1611 13 6 8.5267 4.4179 5.1351 14 6 9.5320 4.5798 6.0433 15 6 10.3343 5.7364 6.0009 16 6 11.3731 5.9147 6.9407 17 1 11.8212 5.0566 7.4195 18 6 11.8217 7.2027 7.2516 19 7 11.0794 8.2415 6.9632 20 14 13.4798 7.4402 8.0782 21 1 14.5323 7.5925 7.0417 22 1 13.4403 8.6585 8.9264 23 1 13.7852 6.2582 8.9237 24 6 10.0948 6.7145 5.0163 25 6 9.0887 6.5350 4.1124 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5066 1.0921 32 1 2.4772 1.2357 2.1130 33 1 4.2436 2.7487 0.3022 34 1 5.4311 1.8501 2.2225 35 1 4.1688 2.5795 3.2438 36 1 4.0754 5.0203 3.3447 37 1 7.1827 3.1543 3.2448 38 1 6.0504 3.9800 4.3423 39 1 7.9079 3.5334 5.1687 40 1 9.7092 3.8250 6.7952 41 1 11.3907 9.1346 7.1784 42 1 10.7054 7.6045 4.9773 43 1 8.9034 7.2842 3.3570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594718502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = -58.544107 kcal Electronic energy + Delta-G solvation = -21734.752993 eV Core-core repulsion = 18359.058370 eV Total energy + Delta-G solvation = -3375.694624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.11325 -37.95501 -36.71499 -35.94097 -34.31438 -33.31377 -30.92443 -29.77289 -29.07684 -28.31586 -25.27527 -24.37185 -22.52660 -22.00400 -20.68440 -20.55376 -20.11796 -17.36264 -17.24633 -16.77183 -16.15583 -15.90262 -15.38400 -15.20947 -14.97561 -14.41814 -14.10514 -14.05664 -13.91958 -13.42236 -13.12249 -12.85593 -12.30490 -12.26077 -12.15073 -12.02564 -11.76697 -11.46758 -11.40128 -11.34948 -11.15165 -10.96600 -10.79016 -10.59981 -9.99379 -9.92680 -9.81883 -9.68795 -9.33140 -9.02657 -8.70297 -7.64570 -7.03378 -6.72221 -4.25701 1.89414 2.77712 2.94838 3.08680 3.11882 3.21394 3.52565 3.95180 4.17914 4.46493 4.61558 4.64386 4.70985 4.80477 4.93610 4.99988 5.01050 5.19716 5.23969 5.29306 5.44454 5.52405 5.60799 5.62701 5.67092 5.73919 6.02109 6.05642 6.22740 6.25209 6.38492 6.65128 6.73391 6.97536 7.05101 7.11099 7.18569 7.46305 7.55559 7.76929 7.79126 8.00505 8.20372 8.45249 8.65338 8.89825 8.98621 10.22246 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057748 B = 0.002077 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.745750 B =13475.878097 C =13774.278344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.063 3.937 5 N -0.681 5.681 6 C 0.031 3.969 7 C 0.115 3.885 8 H 0.103 0.897 9 O -0.541 6.541 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.169 4.169 14 C -0.198 4.198 15 C 0.087 3.913 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.133 4.133 25 C -0.119 4.119 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.343 0.657 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.371 0.629 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.280 0.720 42 H 0.126 0.874 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 -11.888 -9.730 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.066 4.066 5 N -0.312 5.312 6 C -0.099 4.099 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.345 6.345 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.187 4.187 14 C -0.218 4.218 15 C 0.085 3.915 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.153 4.153 25 C -0.138 4.138 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.218 0.782 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.999 -10.971 -10.091 20.449 hybrid contribution 1.247 -1.006 0.933 1.854 sum -12.752 -11.977 -9.158 19.747 Atomic orbital electron populations 1.23889 0.95972 1.01929 1.01077 1.22907 0.96091 0.98327 0.99961 1.20733 0.98521 0.95659 0.98178 1.21918 0.95780 0.89817 0.99135 1.60329 1.30661 1.34002 1.06204 1.22578 0.94550 0.97086 0.95696 1.21838 0.87611 0.85950 0.99101 0.87916 1.86629 1.57806 1.48115 1.41916 1.23114 0.93536 0.88683 0.98597 1.85885 1.44696 1.39318 1.53367 1.18628 0.94100 0.97862 0.94648 1.20393 1.01450 0.98291 0.98605 1.20550 0.98788 1.01067 1.01412 1.17604 0.91492 0.90833 0.91572 1.19465 1.16053 0.92788 1.21092 0.90555 1.25881 0.98013 0.95675 0.94652 1.69840 1.35095 0.99872 1.37627 0.86319 0.82303 0.78573 0.79537 1.19327 1.20378 1.18736 1.20986 0.98585 1.01276 0.94403 1.19849 0.97494 0.95394 1.01042 0.88433 0.88557 0.87530 0.90434 0.91065 0.95239 0.90887 0.83924 0.94045 0.90312 0.78204 0.92600 0.92863 0.88980 0.88784 0.90903 0.85650 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.02 0.42 -0.80 16 2 C -0.15 -1.03 9.52 -36.02 -0.34 -1.37 16 3 C -0.09 -0.66 5.92 -27.88 -0.16 -0.83 16 4 C 0.06 0.49 5.67 -3.82 -0.02 0.47 16 5 N -0.68 -6.30 6.45 -113.77 -0.73 -7.03 16 6 C 0.03 0.30 5.32 -3.82 -0.02 0.28 16 7 C 0.12 1.44 3.43 -26.73 -0.09 1.35 16 8 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 9 O -0.54 -7.61 13.25 -40.08 -0.53 -8.14 16 10 C 0.04 0.58 4.36 37.16 0.16 0.74 16 11 O -0.32 -6.55 10.09 -23.56 -0.24 -6.78 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.48 16 13 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 14 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 15 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 16 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 17 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 18 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 19 N -0.80 -20.78 10.96 55.54 0.61 -20.18 16 20 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 25 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 26 H 0.10 0.60 7.84 -52.48 -0.41 0.19 16 27 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.34 2.95 8.73 -39.30 -0.34 2.61 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.37 4.08 9.04 45.56 0.41 4.49 16 37 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.05 0.78 7.63 -51.92 -0.40 0.38 16 39 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 40 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 42 H 0.13 3.37 6.16 -52.48 -0.32 3.05 16 43 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -29.70 362.35 -9.26 -38.96 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.97 Total: 10.41 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.82 Total: -26.41 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: -0.13 Total: -27.21 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.77 Total: -14.92 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.70 -9.26 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594718502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.581 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds