Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00025 * 2 1 4 4 C 1.53003 * 109.47419 * 124.99563 * 3 2 1 5 5 N 1.46900 * 109.47209 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99651 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46696 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46985 * 305.00301 * 7 6 5 9 9 O 1.42900 * 109.47007 * 65.00136 * 7 6 5 10 10 C 1.52999 * 109.47031 * 185.00089 * 7 6 5 11 11 O 1.42897 * 109.47433 * 175.00071 * 10 7 6 12 12 C 1.35669 * 117.00243 * 179.97438 * 11 10 7 13 13 C 1.39311 * 119.81866 * 359.72733 * 12 11 10 14 14 C 1.36438 * 120.18358 * 179.75745 * 13 12 11 15 15 C 1.40830 * 119.81289 * 0.51455 * 14 13 12 16 16 C 1.41218 * 120.17970 * 179.72046 * 15 14 13 17 17 H 1.07998 * 120.00072 * 24.56905 * 16 15 14 18 18 C 1.39890 * 120.00080 * 204.56816 * 16 15 14 19 19 N 1.30886 * 119.99515 * 17.93469 * 18 16 15 20 20 Si 1.86792 * 120.00234 * 197.93138 * 18 16 15 21 21 H 1.48501 * 109.47005 * 90.00069 * 20 18 16 22 22 H 1.48502 * 109.47551 * 210.00116 * 20 18 16 23 23 H 1.48500 * 109.47275 * 330.00023 * 20 18 16 24 24 C 1.40828 * 119.64080 * 359.73527 * 15 14 13 25 25 C 1.36439 * 119.81623 * 0.02562 * 24 15 14 26 26 H 1.08003 * 120.00282 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00075 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00193 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47425 * 4.99389 * 3 2 1 30 30 H 1.09002 * 109.46915 * 244.99553 * 3 2 1 31 31 H 1.09006 * 109.46431 * 59.99933 * 4 3 2 32 32 H 1.08996 * 109.47321 * 300.00211 * 4 3 2 33 33 H 1.00890 * 111.00186 * 303.95830 * 5 4 3 34 34 H 1.09000 * 109.47415 * 60.00746 * 6 5 4 35 35 H 1.09004 * 109.47124 * 299.99947 * 6 5 4 36 36 H 0.96693 * 114.00269 * 60.00236 * 9 7 6 37 37 H 1.09003 * 109.47247 * 54.99860 * 10 7 6 38 38 H 1.09009 * 109.47007 * 295.00024 * 10 7 6 39 39 H 1.08000 * 119.90560 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09115 * 180.25228 * 14 13 12 41 41 H 0.96999 * 119.99379 * 180.02562 * 19 18 16 42 42 H 1.08008 * 120.09419 * 179.97438 * 24 15 14 43 43 H 1.07990 * 119.91036 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 7 3.7699 2.6052 1.1813 6 6 4.7147 2.6675 2.3044 7 6 5.4591 4.0038 2.2709 8 1 5.9321 4.1319 1.2973 9 8 4.5344 5.0700 2.4951 10 6 6.5296 4.0188 3.3640 11 8 7.3012 5.2169 3.2587 12 6 8.2998 5.3878 4.1611 13 6 8.5267 4.4179 5.1351 14 6 9.5320 4.5798 6.0433 15 6 10.3343 5.7364 6.0009 16 6 11.3731 5.9147 6.9407 17 1 11.8212 5.0566 7.4195 18 6 11.8217 7.2027 7.2516 19 7 11.0794 8.2415 6.9632 20 14 13.4798 7.4402 8.0782 21 1 14.5323 7.5925 7.0417 22 1 13.4403 8.6585 8.9264 23 1 13.7852 6.2582 8.9237 24 6 10.0948 6.7145 5.0163 25 6 9.0887 6.5350 4.1124 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5066 1.0921 32 1 2.4772 1.2357 2.1130 33 1 4.2436 2.7487 0.3022 34 1 5.4311 1.8501 2.2225 35 1 4.1688 2.5795 3.2438 36 1 4.0754 5.0203 3.3447 37 1 7.1827 3.1543 3.2448 38 1 6.0504 3.9800 4.3423 39 1 7.9079 3.5334 5.1687 40 1 9.7092 3.8250 6.7952 41 1 11.3907 9.1346 7.1784 42 1 10.7054 7.6045 4.9773 43 1 8.9034 7.2842 3.3570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594718502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -78.069796 kcal Electronic energy + Delta-G solvation = -21735.599691 eV Core-core repulsion = 18359.058370 eV Total energy + Delta-G solvation = -3376.541321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65901 -39.13839 -37.97076 -37.09723 -35.18495 -34.97895 -32.11136 -31.39008 -30.87271 -29.26302 -26.83564 -25.67750 -23.30490 -23.15987 -22.46347 -22.13314 -20.63286 -19.25693 -18.73227 -17.85399 -17.34062 -17.04793 -16.70105 -16.21584 -15.92196 -15.74379 -15.51402 -15.14896 -15.11679 -14.73927 -14.21709 -14.07708 -13.95309 -13.77692 -13.49804 -13.16029 -12.95479 -12.80491 -12.65217 -12.61025 -12.39228 -12.05092 -11.90825 -11.89174 -11.68949 -11.58882 -11.21311 -10.93452 -10.87318 -10.21333 -9.56778 -9.38741 -8.93039 -8.59673 -6.23129 0.94479 1.02127 1.39977 1.40141 1.52883 1.53194 2.22825 2.39188 2.72418 3.23745 3.53601 3.69819 3.89743 3.99092 4.02360 4.12912 4.21157 4.27138 4.28703 4.36276 4.36967 4.46112 4.52309 4.64404 4.67175 4.86390 5.01345 5.02783 5.06862 5.08156 5.17995 5.21475 5.28204 5.58204 5.64066 5.76312 5.87944 5.88663 5.99417 6.05485 6.25972 6.38105 6.56386 6.80000 6.87819 6.94803 7.09957 8.36971 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057748 B = 0.002077 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.745750 B =13475.878097 C =13774.278344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.089 4.089 4 C 0.067 3.933 5 N -0.691 5.691 6 C 0.041 3.959 7 C 0.123 3.877 8 H 0.097 0.903 9 O -0.561 6.561 10 C 0.029 3.971 11 O -0.331 6.331 12 C 0.000 4.000 13 C -0.165 4.165 14 C -0.207 4.207 15 C 0.053 3.947 16 C -0.499 4.499 17 H 0.077 0.923 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.258 1.258 24 C -0.152 4.152 25 C -0.135 4.135 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.346 0.654 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.383 0.617 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.287 0.713 42 H 0.109 0.891 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 -13.468 -9.779 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.180 4.180 3 C -0.127 4.127 4 C -0.062 4.062 5 N -0.323 5.323 6 C -0.088 4.088 7 C 0.063 3.937 8 H 0.115 0.885 9 O -0.368 6.368 10 C -0.047 4.047 11 O -0.247 6.247 12 C -0.044 4.044 13 C -0.184 4.184 14 C -0.227 4.227 15 C 0.051 3.949 16 C -0.529 4.529 17 H 0.095 0.905 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.181 1.181 24 C -0.172 4.172 25 C -0.154 4.154 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.608 -12.571 -10.149 21.781 hybrid contribution 1.241 -0.577 0.844 1.608 sum -13.367 -13.147 -9.305 20.931 Atomic orbital electron populations 1.24036 0.96072 1.02464 1.00603 1.22978 0.96265 0.98399 1.00381 1.20679 0.98238 0.95646 0.98128 1.21897 0.95786 0.89335 0.99211 1.60313 1.30718 1.35008 1.06264 1.22430 0.94692 0.95412 0.96288 1.21801 0.86914 0.87207 0.97731 0.88532 1.86596 1.58116 1.49083 1.42982 1.23513 0.93827 0.87045 1.00346 1.85878 1.44218 1.42072 1.52538 1.18698 0.93951 0.97110 0.94626 1.20704 1.00988 0.99279 0.97407 1.20804 0.98970 1.00692 1.02204 1.17971 0.92651 0.92047 0.92230 1.19719 1.17295 0.93700 1.22175 0.90523 1.26752 1.01467 0.94871 0.95022 1.69898 1.36846 1.00516 1.38591 0.85187 0.77112 0.78768 0.78519 1.18800 1.19411 1.18149 1.20900 0.99590 1.01191 0.95500 1.20017 0.97680 0.96585 1.01093 0.88536 0.87507 0.86678 0.91417 0.90688 0.94478 0.91236 0.83603 0.92823 0.89551 0.76817 0.91157 0.91787 0.85257 0.87551 0.90214 0.87268 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 14.32 67.79 0.97 -1.23 16 2 C -0.16 -1.89 9.52 25.65 0.24 -1.65 16 3 C -0.09 -1.14 5.92 29.85 0.18 -0.96 16 4 C 0.07 0.91 5.67 86.30 0.49 1.40 16 5 N -0.69 -11.37 6.45 -513.87 -3.31 -14.69 16 6 C 0.04 0.69 5.32 86.30 0.46 1.15 16 7 C 0.12 2.84 3.43 30.60 0.10 2.94 16 8 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 9 O -0.56 -14.90 13.25 -144.35 -1.91 -16.82 16 10 C 0.03 0.81 4.36 71.98 0.31 1.13 16 11 O -0.33 -13.18 10.09 -85.23 -0.86 -14.04 16 12 C 0.00 0.00 6.71 22.79 0.15 0.15 16 13 C -0.17 -7.21 8.96 22.11 0.20 -7.01 16 14 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 15 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 16 C -0.50 -27.16 9.04 23.40 0.21 -26.95 16 17 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 18 C 0.03 1.67 5.13 85.23 0.44 2.11 16 19 N -0.83 -44.34 10.96 21.82 0.24 -44.10 16 20 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 C -0.15 -8.28 8.64 22.48 0.19 -8.09 16 25 C -0.13 -6.73 9.92 22.11 0.22 -6.52 16 26 H 0.10 1.08 7.84 -2.91 -0.02 1.06 16 27 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 28 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 29 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.35 5.33 8.73 -89.70 -0.78 4.54 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.38 7.77 9.04 -74.06 -0.67 7.10 16 37 H 0.07 1.79 7.66 -2.39 -0.02 1.78 16 38 H 0.06 1.68 7.63 -2.38 -0.02 1.66 16 39 H 0.13 4.58 6.27 -2.91 -0.02 4.57 16 40 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 41 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 42 H 0.11 6.17 6.16 -2.91 -0.02 6.15 16 43 H 0.11 4.95 8.06 -2.92 -0.02 4.93 16 Total: -1.00 -64.12 362.35 0.01 -64.12 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.45 Total: 35.56 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 4.27 Total: -50.65 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -3.08 Total: -58.78 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -2.77 Total: -30.86 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -64.12 0.01 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594718502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.953 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds