Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 H 1.09000 * 109.47019 * 305.00071 * 3 2 1 5 5 O 1.42898 * 109.47532 * 64.99907 * 3 2 1 6 6 C 1.53000 * 109.47176 * 185.00111 * 3 2 1 7 7 C 1.53002 * 109.47268 * 174.99826 * 6 3 2 8 8 C 1.53000 * 109.47268 * 179.97438 * 7 6 3 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 H 1.08999 * 109.46867 * 60.00215 * 1 2 3 27 27 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46753 * 300.00285 * 1 2 3 29 29 H 1.09002 * 109.47214 * 239.99535 * 2 1 3 30 30 H 1.08999 * 109.46867 * 119.99785 * 2 1 3 31 31 H 0.96707 * 113.99954 * 59.99637 * 5 3 2 32 32 H 1.08997 * 109.47147 * 54.99536 * 6 3 2 33 33 H 1.08996 * 109.46992 * 294.99557 * 6 3 2 34 34 H 1.09000 * 109.47208 * 59.99262 * 7 6 3 35 35 H 1.09002 * 109.46773 * 300.00214 * 7 6 3 36 36 H 1.08997 * 109.47147 * 59.99710 * 8 7 6 37 37 H 1.09003 * 109.46728 * 299.99500 * 8 7 6 38 38 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 39 39 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 40 40 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 41 41 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 43 43 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2512 8 6 5.5895 2.8867 -0.3763 9 7 6.0679 4.2661 -0.4970 10 6 7.3871 4.5136 -0.6193 11 8 8.1803 3.5918 -0.6289 12 6 7.8686 5.9017 -0.7402 13 6 6.9622 6.9574 -0.7905 14 6 7.4178 8.2569 -0.9097 15 6 8.7779 8.5275 -0.9749 16 6 9.6980 7.5058 -0.9213 17 6 9.2604 6.1740 -0.8001 18 6 10.1944 5.1205 -0.7449 19 1 9.9900 4.2487 -0.1411 20 6 11.3898 5.2041 -1.4741 21 7 11.4892 6.0417 -2.4715 22 14 12.8395 4.1175 -1.0189 23 1 13.6890 4.8175 -0.0222 24 1 12.3410 2.8450 -0.4379 25 1 13.6407 3.8261 -2.2348 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6542 2.0139 32 1 3.8571 0.8799 -1.0113 33 1 4.0030 0.9835 0.7596 34 1 3.7724 3.4493 0.6343 35 1 3.6265 3.3456 -1.1366 36 1 5.8821 2.3222 -1.2616 37 1 6.0272 2.4262 0.5094 38 1 5.4353 5.0014 -0.4882 39 1 5.9016 6.7602 -0.7405 40 1 6.7085 9.0701 -0.9524 41 1 9.1168 9.5487 -1.0675 42 1 10.7542 7.7257 -0.9723 43 1 10.7143 6.5506 -2.7565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -101.363897 kcal Electronic energy + Delta-G solvation = -22497.363850 eV Core-core repulsion = 19119.812421 eV Total energy + Delta-G solvation = -3377.551429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.08224 -38.46946 -37.02216 -34.98779 -33.93915 -33.16319 -32.12218 -30.03201 -29.35779 -27.61366 -25.27106 -24.03285 -22.20837 -21.61267 -21.39512 -20.80179 -19.37154 -18.05310 -16.67582 -16.38481 -16.29372 -15.40708 -15.16882 -14.81120 -14.60920 -14.14344 -13.89863 -13.88198 -13.56060 -13.32993 -12.93735 -12.60707 -12.44002 -12.17181 -12.11628 -11.80675 -11.65078 -11.53860 -11.30847 -11.13157 -10.93692 -10.91879 -10.77508 -10.73385 -10.36758 -10.14790 -10.08515 -9.59333 -9.07178 -8.48699 -8.36682 -7.77848 -7.59684 -7.13103 -4.45093 2.25399 2.74226 3.20387 3.31642 3.42373 3.85466 4.04998 4.09013 4.14102 4.43001 4.65419 4.65807 4.72685 4.90085 5.05720 5.15871 5.30931 5.41398 5.47317 5.50301 5.60639 5.63255 5.67444 5.82446 5.88522 5.91094 5.93705 6.02902 6.15229 6.20982 6.28154 6.53525 6.72787 7.00133 7.14380 7.29249 7.39562 7.50526 7.62278 7.73325 7.90201 8.10781 8.22818 8.39868 8.74664 8.87639 9.38261 10.05457 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.003118 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.231329 B = 8976.558360 C =10145.667792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.561 6.561 6 C -0.148 4.148 7 C -0.126 4.126 8 C 0.125 3.875 9 N -0.750 5.750 10 C 0.562 3.438 11 O -0.539 6.539 12 C -0.265 4.265 13 C -0.044 4.044 14 C -0.260 4.260 15 C -0.076 4.076 16 C -0.201 4.201 17 C 0.120 3.880 18 C -0.466 4.466 19 H 0.106 0.894 20 C 0.030 3.970 21 N -0.795 5.795 22 Si 1.073 2.927 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.276 1.276 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.373 0.627 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.391 0.609 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 -7.933 3.905 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.366 6.366 6 C -0.187 4.187 7 C -0.164 4.164 8 C 0.001 3.999 9 N -0.405 5.405 10 C 0.356 3.644 11 O -0.417 6.417 12 C -0.270 4.270 13 C -0.062 4.062 14 C -0.279 4.279 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.115 3.885 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.191 4.191 21 N -0.418 5.418 22 Si 0.897 3.103 23 H -0.201 1.201 24 H -0.198 1.198 25 H -0.202 1.202 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.225 0.775 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.354 -8.530 3.049 16.137 hybrid contribution -1.758 0.454 0.589 1.909 sum -15.112 -8.076 3.638 17.516 Atomic orbital electron populations 1.21708 0.95243 1.01344 1.02376 1.22256 0.97027 0.97431 1.02794 1.22003 0.93218 0.92441 0.87715 0.88435 1.86584 1.76957 1.57363 1.15693 1.22230 0.95882 0.97399 1.03169 1.21719 0.94876 0.96912 1.02903 1.21131 0.92757 0.84656 1.01365 1.46013 1.08313 1.07505 1.78625 1.18386 0.80651 0.89786 0.75574 1.90674 1.54020 1.46569 1.50455 1.19409 0.94122 0.90473 1.23008 1.20724 0.96383 0.93037 0.96104 1.20245 0.94936 0.95315 1.17405 1.20746 0.93482 0.97288 0.97966 1.21255 0.98257 0.92547 1.09961 1.17523 0.90574 0.92497 0.87867 1.21212 1.00338 1.04591 1.23186 0.87656 1.27274 1.01559 0.97216 0.93061 1.70356 1.35714 1.16545 1.19217 0.83517 0.73902 0.75943 0.76982 1.20059 1.19763 1.20161 0.92771 0.92969 0.92115 0.91030 0.91670 0.78003 0.90719 0.91309 0.90830 0.91569 0.92437 0.92431 0.77457 0.89094 0.88886 0.88871 0.87523 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.81 37.16 0.36 -0.65 16 2 C -0.16 -1.06 5.61 -26.73 -0.15 -1.21 16 3 C 0.11 0.84 2.97 -26.73 -0.08 0.77 16 4 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 5 O -0.56 -5.01 12.41 -35.23 -0.44 -5.45 16 6 C -0.15 -1.29 4.89 -26.73 -0.13 -1.42 16 7 C -0.13 -1.38 5.23 -26.73 -0.14 -1.52 16 8 C 0.13 1.89 5.67 -4.04 -0.02 1.86 16 9 N -0.75 -13.54 5.51 -61.38 -0.34 -13.88 16 10 C 0.56 13.30 7.73 -12.52 -0.10 13.20 16 11 O -0.54 -14.52 13.55 5.26 0.07 -14.45 16 12 C -0.27 -6.55 5.92 -104.37 -0.62 -7.17 16 13 C -0.04 -0.93 9.53 -39.22 -0.37 -1.31 16 14 C -0.26 -5.50 10.03 -39.37 -0.39 -5.90 16 15 C -0.08 -1.70 10.01 -39.60 -0.40 -2.09 16 16 C -0.20 -5.07 7.86 -38.88 -0.31 -5.37 16 17 C 0.12 3.23 5.18 -106.54 -0.55 2.68 16 18 C -0.47 -12.98 7.66 -37.81 -0.29 -13.27 16 19 H 0.11 3.07 5.91 -52.48 -0.31 2.76 16 20 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 21 N -0.79 -21.50 12.57 55.56 0.70 -20.80 16 22 Si 1.07 22.79 29.98 -169.99 -5.10 17.70 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.37 2.19 9.05 45.56 0.41 2.60 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 6.14 6.51 -40.82 -0.27 5.87 16 39 H 0.09 1.61 6.41 -52.49 -0.34 1.27 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.11 2.73 6.93 -52.49 -0.36 2.37 16 43 H 0.30 8.26 6.54 -40.82 -0.27 7.99 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -31.27 353.00 -8.87 -40.14 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.81 Total: 12.13 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.27 Total: -20.70 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.36 Total: -34.68 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.37 Total: -19.90 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.10 Total: 17.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.27 -8.87 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.226 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds