Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 H 1.09000 * 109.47019 * 305.00071 * 3 2 1 5 5 O 1.42898 * 109.47532 * 64.99907 * 3 2 1 6 6 C 1.53000 * 109.47176 * 185.00111 * 3 2 1 7 7 C 1.53002 * 109.47268 * 174.99826 * 6 3 2 8 8 C 1.53000 * 109.47268 * 179.97438 * 7 6 3 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 H 1.08999 * 109.46867 * 60.00215 * 1 2 3 27 27 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46753 * 300.00285 * 1 2 3 29 29 H 1.09002 * 109.47214 * 239.99535 * 2 1 3 30 30 H 1.08999 * 109.46867 * 119.99785 * 2 1 3 31 31 H 0.96707 * 113.99954 * 59.99637 * 5 3 2 32 32 H 1.08997 * 109.47147 * 54.99536 * 6 3 2 33 33 H 1.08996 * 109.46992 * 294.99557 * 6 3 2 34 34 H 1.09000 * 109.47208 * 59.99262 * 7 6 3 35 35 H 1.09002 * 109.46773 * 300.00214 * 7 6 3 36 36 H 1.08997 * 109.47147 * 59.99710 * 8 7 6 37 37 H 1.09003 * 109.46728 * 299.99500 * 8 7 6 38 38 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 39 39 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 40 40 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 41 41 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 43 43 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2512 8 6 5.5895 2.8867 -0.3763 9 7 6.0679 4.2661 -0.4970 10 6 7.3871 4.5136 -0.6193 11 8 8.1803 3.5918 -0.6289 12 6 7.8686 5.9017 -0.7402 13 6 6.9622 6.9574 -0.7905 14 6 7.4178 8.2569 -0.9097 15 6 8.7779 8.5275 -0.9749 16 6 9.6980 7.5058 -0.9213 17 6 9.2604 6.1740 -0.8001 18 6 10.1944 5.1205 -0.7449 19 1 9.9900 4.2487 -0.1411 20 6 11.3898 5.2041 -1.4741 21 7 11.4892 6.0417 -2.4715 22 14 12.8395 4.1175 -1.0189 23 1 13.6890 4.8175 -0.0222 24 1 12.3410 2.8450 -0.4379 25 1 13.6407 3.8261 -2.2348 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6542 2.0139 32 1 3.8571 0.8799 -1.0113 33 1 4.0030 0.9835 0.7596 34 1 3.7724 3.4493 0.6343 35 1 3.6265 3.3456 -1.1366 36 1 5.8821 2.3222 -1.2616 37 1 6.0272 2.4262 0.5094 38 1 5.4353 5.0014 -0.4882 39 1 5.9016 6.7602 -0.7405 40 1 6.7085 9.0701 -0.9524 41 1 9.1168 9.5487 -1.0675 42 1 10.7542 7.7257 -0.9723 43 1 10.7143 6.5506 -2.7565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -122.204840 kcal Electronic energy + Delta-G solvation = -22498.267581 eV Core-core repulsion = 19119.812421 eV Total energy + Delta-G solvation = -3378.455160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82917 -39.26547 -38.75464 -36.43580 -35.75210 -33.91158 -33.25621 -31.77211 -31.17343 -28.68392 -27.08179 -25.16297 -23.77569 -22.78808 -22.35933 -22.16358 -21.08145 -19.93660 -18.09167 -17.39210 -17.16010 -16.70071 -16.53069 -16.32073 -15.87032 -15.85561 -15.46446 -15.27883 -15.02263 -14.43498 -14.23269 -13.96313 -13.78439 -13.60341 -13.19929 -12.97993 -12.89367 -12.68968 -12.54710 -12.50973 -12.44067 -12.06054 -11.94654 -11.83603 -11.71427 -11.56755 -11.46626 -10.97023 -10.75696 -10.34370 -10.01437 -9.61617 -9.50553 -9.10867 -6.47242 0.38943 0.89477 1.45406 1.61576 1.76509 2.24160 2.30346 2.42490 2.73527 3.48557 3.55189 3.72959 3.94852 4.02268 4.16399 4.21586 4.26079 4.34407 4.38918 4.45432 4.50921 4.66598 4.71265 4.80726 4.84048 4.87121 4.97029 4.97484 5.12438 5.13130 5.16196 5.30300 5.39242 5.41809 5.42311 5.59005 5.65369 5.70951 5.89031 5.96070 6.19590 6.32812 6.68377 6.84783 6.89668 6.92057 7.59707 8.03577 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.003118 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.231329 B = 8976.558360 C =10145.667792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.111 3.889 4 H 0.094 0.906 5 O -0.576 6.576 6 C -0.144 4.144 7 C -0.112 4.112 8 C 0.124 3.876 9 N -0.729 5.729 10 C 0.555 3.445 11 O -0.581 6.581 12 C -0.284 4.284 13 C -0.042 4.042 14 C -0.244 4.244 15 C -0.072 4.072 16 C -0.225 4.225 17 C 0.094 3.906 18 C -0.510 4.510 19 H 0.080 0.920 20 C -0.004 4.004 21 N -0.818 5.818 22 Si 1.119 2.881 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.267 1.267 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.385 0.615 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.406 0.594 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 -7.284 4.319 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.052 3.948 4 H 0.111 0.889 5 O -0.384 6.384 6 C -0.182 4.182 7 C -0.150 4.150 8 C 0.000 4.000 9 N -0.383 5.383 10 C 0.348 3.652 11 O -0.463 6.463 12 C -0.289 4.289 13 C -0.061 4.061 14 C -0.263 4.263 15 C -0.091 4.091 16 C -0.245 4.245 17 C 0.090 3.910 18 C -0.538 4.538 19 H 0.098 0.902 20 C -0.219 4.219 21 N -0.442 5.442 22 Si 0.936 3.064 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.191 1.191 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.243 0.757 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.869 -7.857 3.477 18.045 hybrid contribution -1.289 0.367 0.510 1.434 sum -17.158 -7.490 3.987 19.141 Atomic orbital electron populations 1.21702 0.95279 1.01725 1.01941 1.22221 0.96926 0.96617 1.03418 1.21935 0.92333 0.93135 0.87438 0.88852 1.86551 1.77273 1.58050 1.16497 1.22207 0.96535 0.95819 1.03680 1.21623 0.91297 0.98703 1.03358 1.21321 0.95617 0.82606 1.00450 1.45812 1.06591 1.09463 1.76454 1.18477 0.82171 0.89159 0.75431 1.90654 1.55672 1.47549 1.52444 1.19824 0.94145 0.92269 1.22698 1.21161 0.98120 0.92305 0.94482 1.20822 0.95082 0.96442 1.13942 1.21171 0.93858 0.98099 0.95939 1.21212 0.98249 0.92877 1.12130 1.17934 0.91887 0.93184 0.88038 1.21120 1.02466 1.04681 1.25521 0.90232 1.28496 1.03600 0.97686 0.92130 1.70466 1.34872 1.18441 1.20410 0.82979 0.71510 0.74428 0.77484 1.17909 1.19994 1.19125 0.92976 0.92214 0.92772 0.90542 0.90940 0.76561 0.90353 0.90765 0.90509 0.90822 0.93497 0.93330 0.75724 0.84724 0.84491 0.85670 0.89212 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 71.98 0.71 -1.06 16 2 C -0.15 -1.75 5.61 30.59 0.17 -1.58 16 3 C 0.11 1.53 2.97 30.59 0.09 1.62 16 4 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 5 O -0.58 -9.02 12.41 -148.98 -1.85 -10.87 16 6 C -0.14 -2.21 4.89 30.59 0.15 -2.06 16 7 C -0.11 -2.21 5.23 30.59 0.16 -2.05 16 8 C 0.12 3.61 5.67 86.38 0.49 4.10 16 9 N -0.73 -25.43 5.51 -466.37 -2.57 -28.00 16 10 C 0.55 26.53 7.73 86.66 0.67 27.20 16 11 O -0.58 -32.71 13.55 -4.09 -0.06 -32.76 16 12 C -0.28 -14.05 5.92 -19.70 -0.12 -14.17 16 13 C -0.04 -1.67 9.53 22.50 0.21 -1.46 16 14 C -0.24 -9.34 10.03 22.41 0.22 -9.11 16 15 C -0.07 -3.07 10.01 22.26 0.22 -2.85 16 16 C -0.23 -11.56 7.86 22.72 0.18 -11.38 16 17 C 0.09 5.21 5.18 -21.11 -0.11 5.10 16 18 C -0.51 -30.02 7.66 23.41 0.18 -29.84 16 19 H 0.08 4.98 5.91 -2.91 -0.02 4.96 16 20 C 0.00 -0.22 5.04 85.37 0.43 0.21 16 21 N -0.82 -46.29 12.57 21.88 0.27 -46.02 16 22 Si 1.12 47.81 29.98 68.60 2.06 49.87 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.39 3.69 9.05 -74.05 -0.67 3.02 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.51 7.82 -2.39 -0.02 1.49 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 11.56 6.51 -92.71 -0.60 10.96 16 39 H 0.14 4.10 6.41 -2.91 -0.02 4.09 16 40 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.09 4.81 6.93 -2.91 -0.02 4.79 16 43 H 0.28 16.49 6.54 -92.71 -0.61 15.88 16 Total: -1.00 -71.81 353.00 1.43 -70.38 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.09 Total: 34.71 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.66 Total: -37.31 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.29 Total: -74.02 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.90 Total: -43.63 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.06 Total: 49.87 kcal Total: -71.81 1.43 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.822 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds