Wall clock time and date at job start Tue Mar 31 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 H 1.09004 * 109.46642 * 183.99395 * 3 2 1 5 5 C 1.52999 * 109.47424 * 63.99419 * 3 2 1 6 6 C 1.53000 * 109.46782 * 64.99596 * 5 3 2 7 7 O 1.42909 * 109.46774 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46959 * 303.98971 * 3 2 1 9 9 N 1.46501 * 109.47168 * 295.50160 * 8 3 2 10 10 C 1.34776 * 119.99593 * 184.35527 * 9 8 3 11 11 O 1.21613 * 120.00504 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99966 * 180.02562 * 10 9 8 13 13 C 1.39231 * 120.27981 * 355.70667 * 12 10 9 14 14 C 1.38225 * 120.09058 * 180.27747 * 13 12 10 15 15 C 1.38831 * 120.67321 * 359.69897 * 14 13 12 16 16 C 1.37595 * 120.57312 * 359.97438 * 15 14 13 17 17 C 1.40705 * 119.88248 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.32948 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99814 * 216.21039 * 18 17 16 20 20 C 1.40273 * 120.00006 * 36.21052 * 18 17 16 21 21 N 1.30631 * 119.99694 * 190.41006 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 10.41477 * 20 18 17 23 23 H 1.48503 * 109.46957 * 267.22038 * 22 20 18 24 24 H 1.48499 * 109.47283 * 27.21597 * 22 20 18 25 25 H 1.48496 * 109.47196 * 147.21853 * 22 20 18 26 26 H 1.08994 * 109.46832 * 65.64074 * 1 2 3 27 27 H 1.09001 * 109.46798 * 185.64231 * 1 2 3 28 28 H 1.09003 * 109.46441 * 305.63888 * 1 2 3 29 29 H 1.09001 * 109.47030 * 240.00020 * 2 1 3 30 30 H 1.08998 * 109.47098 * 120.00059 * 2 1 3 31 31 H 1.09001 * 109.46914 * 184.99850 * 5 3 2 32 32 H 1.08995 * 109.46708 * 304.99821 * 5 3 2 33 33 H 1.08994 * 109.47751 * 300.00192 * 6 5 3 34 34 H 1.09004 * 109.47164 * 60.00785 * 6 5 3 35 35 H 0.96697 * 113.99806 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47070 * 175.50573 * 8 3 2 37 37 H 1.09000 * 109.46946 * 55.50836 * 8 3 2 38 38 H 0.96993 * 120.00228 * 4.36380 * 9 8 3 39 39 H 1.07997 * 119.95917 * 359.97438 * 13 12 10 40 40 H 1.08001 * 119.66234 * 179.71227 * 14 13 12 41 41 H 1.07998 * 119.71277 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.06037 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1277 1.4433 -0.0716 5 6 1.6137 2.1342 1.2964 6 6 2.3038 1.4609 2.4844 7 8 1.9052 2.1066 3.6954 8 6 1.4497 2.1921 -1.1960 9 7 1.9445 1.5952 -2.4391 10 6 1.6258 2.1487 -3.6259 11 8 0.9279 3.1439 -3.6649 12 6 2.1232 1.5477 -4.8769 13 6 2.9945 0.4625 -4.8365 14 6 3.4629 -0.0943 -6.0117 15 6 3.0689 0.4134 -7.2423 16 6 2.2037 1.4808 -7.3144 17 6 1.7122 2.0659 -6.1329 18 6 0.8262 3.1595 -6.1958 19 1 0.8881 3.9475 -5.4598 20 6 -0.1361 3.2249 -7.2142 21 7 -0.8189 4.3233 -7.3981 22 14 -0.4414 1.7413 -8.3074 23 1 0.4056 1.8397 -9.5232 24 1 -0.1000 0.5011 -7.5654 25 1 -1.8723 1.7037 -8.7026 26 1 -0.3633 0.4239 -0.9361 27 1 -0.3633 -1.0227 0.1010 28 1 -0.3632 0.5988 0.8352 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8994 3.1854 1.2582 32 1 0.5328 2.0554 1.4117 33 1 2.0182 0.4097 2.5225 34 1 3.3849 1.5397 2.3691 35 1 2.3055 1.7311 4.4915 36 1 1.7485 3.2394 -1.1519 37 1 0.3622 2.1230 -1.1674 38 1 2.5013 0.8016 -2.4080 39 1 3.3086 0.0582 -3.8856 40 1 4.1422 -0.9330 -5.9722 41 1 3.4442 -0.0339 -8.1509 42 1 1.9023 1.8689 -8.2762 43 1 -1.4846 4.3684 -8.1021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:29 Heat of formation + Delta-G solvation = -83.490956 kcal Electronic energy + Delta-G solvation = -23233.882623 eV Core-core repulsion = 19857.106223 eV Total energy + Delta-G solvation = -3376.776400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.31855 -38.18313 -36.99569 -36.15924 -33.80009 -33.01029 -30.55134 -30.45578 -30.17556 -27.53971 -25.36048 -24.38627 -23.15523 -22.08440 -20.89444 -19.59311 -19.16081 -17.70080 -17.47610 -16.58789 -16.20612 -15.37740 -15.33835 -15.10012 -14.35874 -14.10168 -14.07476 -13.85372 -13.65976 -13.51316 -12.77653 -12.64759 -12.35324 -12.31672 -12.08118 -11.96391 -11.76445 -11.50409 -11.44273 -10.94239 -10.77495 -10.70647 -10.65853 -10.51949 -10.41988 -10.15418 -10.06252 -9.80017 -9.25109 -8.45755 -8.35025 -7.81100 -7.58429 -6.89295 -4.47659 2.11636 2.60598 3.08786 3.17794 3.29012 3.73290 3.95264 4.03595 4.20018 4.60669 4.62762 4.70588 4.88152 5.01072 5.13830 5.22215 5.39620 5.42365 5.50887 5.55616 5.65021 5.77740 5.83956 5.87036 5.91096 5.98015 6.04078 6.15150 6.18491 6.21778 6.36464 6.46709 6.52015 6.80178 7.09626 7.13917 7.24362 7.36148 7.39867 7.59295 7.76606 8.02205 8.34744 8.49056 8.65035 8.87992 9.39467 10.07351 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.003834 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.495231 B = 7301.180234 C = 7935.473008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.097 4.097 4 H 0.076 0.924 5 C -0.116 4.116 6 C 0.075 3.925 7 O -0.576 6.576 8 C 0.128 3.872 9 N -0.746 5.746 10 C 0.560 3.440 11 O -0.528 6.528 12 C -0.249 4.249 13 C -0.041 4.041 14 C -0.256 4.256 15 C -0.066 4.066 16 C -0.226 4.226 17 C 0.117 3.883 18 C -0.401 4.401 19 H 0.124 0.876 20 C 0.078 3.922 21 N -0.793 5.793 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.242 1.242 25 H -0.289 1.289 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.377 0.623 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.390 0.610 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -9.185 13.798 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C -0.116 4.116 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.381 6.381 8 C 0.004 3.996 9 N -0.402 5.402 10 C 0.353 3.647 11 O -0.406 6.406 12 C -0.254 4.254 13 C -0.060 4.060 14 C -0.275 4.275 15 C -0.084 4.084 16 C -0.245 4.245 17 C 0.112 3.888 18 C -0.428 4.428 19 H 0.142 0.858 20 C -0.142 4.142 21 N -0.416 5.416 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.166 1.166 25 H -0.216 1.216 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.225 -7.866 13.243 15.972 hybrid contribution 0.471 -1.388 -0.214 1.482 sum 4.696 -9.254 13.030 16.657 Atomic orbital electron populations 1.21907 0.95590 1.01478 1.02664 1.21597 0.96737 0.95727 1.01800 1.21335 1.00712 0.95460 0.94050 0.90524 1.21509 1.01789 1.00292 0.91778 1.22263 0.97695 0.95637 0.84629 1.86490 1.73214 1.61890 1.16535 1.21202 0.99010 0.96846 0.82546 1.45968 1.56065 1.32672 1.05476 1.18345 0.79862 0.83559 0.82946 1.90729 1.37811 1.25454 1.86599 1.19424 1.10790 1.02609 0.92543 1.20761 0.94747 0.94071 0.96439 1.20279 1.09401 1.05294 0.92518 1.20732 0.96194 0.95071 0.96438 1.21149 1.04120 1.01724 0.97521 1.17553 0.91223 0.90445 0.89597 1.20213 1.09759 1.04256 1.08586 0.85810 1.26388 0.95143 0.96942 0.95711 1.69575 1.17920 1.26725 1.27398 0.86392 0.76668 0.83464 0.80185 1.19439 1.16557 1.21619 0.91742 0.93012 0.92420 0.91671 0.92000 0.90885 0.90453 0.93375 0.93770 0.77622 0.91954 0.91690 0.77545 0.88803 0.88588 0.88610 0.87810 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.14 37.16 0.34 -1.35 16 2 C -0.12 -1.17 5.37 -26.73 -0.14 -1.31 16 3 C -0.10 -1.02 2.22 -90.62 -0.20 -1.22 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.12 -1.18 4.91 -26.73 -0.13 -1.31 16 6 C 0.08 0.64 6.81 37.16 0.25 0.90 16 7 O -0.58 -5.38 13.66 -35.23 -0.48 -5.86 16 8 C 0.13 1.89 4.75 -4.04 -0.02 1.87 16 9 N -0.75 -12.64 5.30 -61.38 -0.33 -12.97 16 10 C 0.56 12.71 7.72 -12.52 -0.10 12.61 16 11 O -0.53 -14.14 13.53 5.27 0.07 -14.07 16 12 C -0.25 -5.83 5.92 -104.36 -0.62 -6.45 16 13 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 14 C -0.26 -5.00 10.03 -39.37 -0.39 -5.40 16 15 C -0.07 -1.37 10.01 -39.60 -0.40 -1.77 16 16 C -0.23 -5.37 6.99 -38.88 -0.27 -5.64 16 17 C 0.12 3.02 5.04 -106.54 -0.54 2.48 16 18 C -0.40 -11.35 8.32 -37.82 -0.31 -11.66 16 19 H 0.12 3.88 5.95 -52.49 -0.31 3.57 16 20 C 0.08 2.11 5.47 -17.30 -0.09 2.02 16 21 N -0.79 -21.72 13.92 55.56 0.77 -20.95 16 22 Si 0.91 20.86 24.51 -169.99 -4.17 16.69 16 23 H -0.27 -5.87 6.76 56.52 0.38 -5.49 16 24 H -0.24 -5.70 6.71 56.52 0.38 -5.32 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 6.18 -51.93 -0.32 0.26 16 29 H 0.06 0.65 7.16 -51.93 -0.37 0.28 16 30 H 0.06 0.50 6.39 -51.93 -0.33 0.17 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.83 6.20 -51.93 -0.32 0.51 16 33 H 0.05 0.36 6.48 -51.93 -0.34 0.02 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.38 1.72 9.12 45.56 0.42 2.13 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.02 6.23 -51.93 -0.32 0.70 16 38 H 0.39 5.57 5.56 -40.82 -0.23 5.34 16 39 H 0.09 1.49 6.42 -52.49 -0.34 1.16 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.10 2.43 4.98 -52.49 -0.26 2.17 16 43 H 0.29 7.04 8.29 -40.82 -0.34 6.71 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -31.85 336.14 -7.27 -39.12 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.21 Total: 10.38 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.00 Total: -17.42 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.45 Total: -33.91 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.41 Total: -19.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.17 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.85 -7.27 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.373 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds