Wall clock time and date at job start Tue Mar 31 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 H 1.09004 * 109.46642 * 183.99395 * 3 2 1 5 5 C 1.52999 * 109.47424 * 63.99419 * 3 2 1 6 6 C 1.53000 * 109.46782 * 64.99596 * 5 3 2 7 7 O 1.42909 * 109.46774 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46959 * 303.98971 * 3 2 1 9 9 N 1.46501 * 109.47168 * 295.50160 * 8 3 2 10 10 C 1.34776 * 119.99593 * 184.35527 * 9 8 3 11 11 O 1.21613 * 120.00504 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99966 * 180.02562 * 10 9 8 13 13 C 1.39231 * 120.27981 * 355.70667 * 12 10 9 14 14 C 1.38225 * 120.09058 * 180.27747 * 13 12 10 15 15 C 1.38831 * 120.67321 * 359.69897 * 14 13 12 16 16 C 1.37595 * 120.57312 * 359.97438 * 15 14 13 17 17 C 1.40705 * 119.88248 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.32948 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99814 * 216.21039 * 18 17 16 20 20 C 1.40273 * 120.00006 * 36.21052 * 18 17 16 21 21 N 1.30631 * 119.99694 * 190.41006 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 10.41477 * 20 18 17 23 23 H 1.48503 * 109.46957 * 267.22038 * 22 20 18 24 24 H 1.48499 * 109.47283 * 27.21597 * 22 20 18 25 25 H 1.48496 * 109.47196 * 147.21853 * 22 20 18 26 26 H 1.08994 * 109.46832 * 65.64074 * 1 2 3 27 27 H 1.09001 * 109.46798 * 185.64231 * 1 2 3 28 28 H 1.09003 * 109.46441 * 305.63888 * 1 2 3 29 29 H 1.09001 * 109.47030 * 240.00020 * 2 1 3 30 30 H 1.08998 * 109.47098 * 120.00059 * 2 1 3 31 31 H 1.09001 * 109.46914 * 184.99850 * 5 3 2 32 32 H 1.08995 * 109.46708 * 304.99821 * 5 3 2 33 33 H 1.08994 * 109.47751 * 300.00192 * 6 5 3 34 34 H 1.09004 * 109.47164 * 60.00785 * 6 5 3 35 35 H 0.96697 * 113.99806 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47070 * 175.50573 * 8 3 2 37 37 H 1.09000 * 109.46946 * 55.50836 * 8 3 2 38 38 H 0.96993 * 120.00228 * 4.36380 * 9 8 3 39 39 H 1.07997 * 119.95917 * 359.97438 * 13 12 10 40 40 H 1.08001 * 119.66234 * 179.71227 * 14 13 12 41 41 H 1.07998 * 119.71277 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.06037 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1277 1.4433 -0.0716 5 6 1.6137 2.1342 1.2964 6 6 2.3038 1.4609 2.4844 7 8 1.9052 2.1066 3.6954 8 6 1.4497 2.1921 -1.1960 9 7 1.9445 1.5952 -2.4391 10 6 1.6258 2.1487 -3.6259 11 8 0.9279 3.1439 -3.6649 12 6 2.1232 1.5477 -4.8769 13 6 2.9945 0.4625 -4.8365 14 6 3.4629 -0.0943 -6.0117 15 6 3.0689 0.4134 -7.2423 16 6 2.2037 1.4808 -7.3144 17 6 1.7122 2.0659 -6.1329 18 6 0.8262 3.1595 -6.1958 19 1 0.8881 3.9475 -5.4598 20 6 -0.1361 3.2249 -7.2142 21 7 -0.8189 4.3233 -7.3981 22 14 -0.4414 1.7413 -8.3074 23 1 0.4056 1.8397 -9.5232 24 1 -0.1000 0.5011 -7.5654 25 1 -1.8723 1.7037 -8.7026 26 1 -0.3633 0.4239 -0.9361 27 1 -0.3633 -1.0227 0.1010 28 1 -0.3632 0.5988 0.8352 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8994 3.1854 1.2582 32 1 0.5328 2.0554 1.4117 33 1 2.0182 0.4097 2.5225 34 1 3.3849 1.5397 2.3691 35 1 2.3055 1.7311 4.4915 36 1 1.7485 3.2394 -1.1519 37 1 0.3622 2.1230 -1.1674 38 1 2.5013 0.8016 -2.4080 39 1 3.3086 0.0582 -3.8856 40 1 4.1422 -0.9330 -5.9722 41 1 3.4442 -0.0339 -8.1509 42 1 1.9023 1.8689 -8.2762 43 1 -1.4846 4.3684 -8.1021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:28 Heat of formation + Delta-G solvation = -107.785558 kcal Electronic energy + Delta-G solvation = -23234.936116 eV Core-core repulsion = 19857.106223 eV Total energy + Delta-G solvation = -3377.829893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92247 -39.36067 -38.47423 -37.15533 -35.62288 -34.57286 -32.28586 -31.83728 -31.34175 -28.73316 -27.12300 -25.42460 -24.34554 -23.54158 -22.57925 -21.19904 -20.16616 -19.42789 -18.55628 -17.96198 -17.18136 -17.09203 -16.72849 -16.28473 -15.82368 -15.79219 -15.34776 -15.23829 -14.86082 -14.77229 -14.46406 -14.11197 -13.86388 -13.55910 -13.43082 -13.18777 -12.99626 -12.71940 -12.68864 -12.49826 -12.29839 -12.17804 -12.03336 -11.62012 -11.60065 -11.53637 -11.37091 -11.08310 -10.72774 -10.31955 -9.95752 -9.50371 -9.40538 -8.82295 -6.48606 0.35265 0.84406 1.22883 1.36771 1.45816 2.09586 2.27349 2.42639 2.71927 3.37602 3.54392 3.75360 3.82660 4.08285 4.22470 4.25092 4.28103 4.43608 4.45253 4.47862 4.54959 4.65034 4.65804 4.72223 4.77693 4.84593 4.87992 4.99450 5.04755 5.11751 5.20244 5.30171 5.32215 5.33419 5.47501 5.53551 5.64755 5.69997 5.87940 5.97355 6.28206 6.48125 6.68677 6.79443 6.93950 6.95587 7.66731 8.22149 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.003834 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.495231 B = 7301.180234 C = 7935.473008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.095 0.905 5 C -0.117 4.117 6 C 0.079 3.921 7 O -0.600 6.600 8 C 0.126 3.874 9 N -0.720 5.720 10 C 0.551 3.449 11 O -0.582 6.582 12 C -0.266 4.266 13 C -0.038 4.038 14 C -0.230 4.230 15 C -0.062 4.062 16 C -0.248 4.248 17 C 0.099 3.901 18 C -0.452 4.452 19 H 0.071 0.929 20 C 0.034 3.966 21 N -0.851 5.851 22 Si 0.969 3.031 23 H -0.247 1.247 24 H -0.248 1.248 25 H -0.281 1.281 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.408 0.592 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -14.007 14.756 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.100 4.100 4 H 0.114 0.886 5 C -0.155 4.155 6 C 0.001 3.999 7 O -0.409 6.409 8 C 0.002 3.998 9 N -0.375 5.375 10 C 0.344 3.656 11 O -0.463 6.463 12 C -0.271 4.271 13 C -0.057 4.057 14 C -0.248 4.248 15 C -0.080 4.080 16 C -0.267 4.267 17 C 0.095 3.905 18 C -0.481 4.481 19 H 0.089 0.911 20 C -0.179 4.179 21 N -0.478 5.478 22 Si 0.791 3.209 23 H -0.172 1.172 24 H -0.172 1.172 25 H -0.208 1.208 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.119 0.881 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.293 -12.733 14.249 20.453 hybrid contribution -0.223 -0.061 -0.280 0.363 sum 7.070 -12.794 13.969 20.219 Atomic orbital electron populations 1.21899 0.96701 1.01987 1.01113 1.21624 0.95677 0.94825 1.03375 1.21223 1.01386 0.95571 0.91790 0.88638 1.21479 1.01480 0.99782 0.92748 1.22231 0.98146 0.95961 0.83523 1.86436 1.73942 1.62775 1.17725 1.21329 0.98498 0.96606 0.83359 1.45683 1.54876 1.32421 1.04529 1.18578 0.79396 0.83085 0.84558 1.90734 1.40156 1.27883 1.87517 1.19825 1.11420 1.03782 0.92039 1.21230 0.92978 0.92232 0.99251 1.20960 1.07513 1.04932 0.91432 1.21258 0.94238 0.93523 0.99007 1.21248 1.05572 1.03306 0.96559 1.17822 0.90794 0.90099 0.91742 1.19963 1.13350 1.05484 1.09281 0.91147 1.27139 0.94417 0.99554 0.96820 1.69636 1.19981 1.28699 1.29438 0.85468 0.77193 0.79382 0.78881 1.17213 1.17196 1.20754 0.94785 0.91767 0.92249 0.91318 0.89073 0.92379 0.91506 0.91612 0.92319 0.75248 0.93961 0.93253 0.75436 0.84082 0.83625 0.84568 0.88137 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.14 71.98 0.66 -2.50 16 2 C -0.12 -1.88 5.37 30.60 0.16 -1.72 16 3 C -0.08 -1.54 2.22 -10.79 -0.02 -1.56 16 4 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.12 -2.24 4.91 30.59 0.15 -2.09 16 6 C 0.08 1.11 6.81 71.98 0.49 1.60 16 7 O -0.60 -9.91 13.66 -148.98 -2.04 -11.94 16 8 C 0.13 3.77 4.75 86.38 0.41 4.18 16 9 N -0.72 -23.91 5.30 -466.35 -2.47 -26.38 16 10 C 0.55 25.82 7.72 86.67 0.67 26.49 16 11 O -0.58 -33.79 13.53 -4.07 -0.06 -33.84 16 12 C -0.27 -12.35 5.92 -19.70 -0.12 -12.47 16 13 C -0.04 -1.35 9.52 22.51 0.21 -1.13 16 14 C -0.23 -7.50 10.03 22.41 0.22 -7.28 16 15 C -0.06 -2.28 10.01 22.26 0.22 -2.06 16 16 C -0.25 -11.44 6.99 22.72 0.16 -11.28 16 17 C 0.10 5.27 5.04 -21.11 -0.11 5.16 16 18 C -0.45 -27.67 8.32 23.41 0.19 -27.47 16 19 H 0.07 4.94 5.95 -2.91 -0.02 4.93 16 20 C 0.03 1.98 5.47 85.37 0.47 2.44 16 21 N -0.85 -50.60 13.92 21.88 0.30 -50.29 16 22 Si 0.97 44.35 24.51 68.60 1.68 46.03 16 23 H -0.25 -10.32 6.76 99.48 0.67 -9.64 16 24 H -0.25 -11.38 6.71 99.48 0.67 -10.72 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 H 0.03 0.87 6.59 -2.39 -0.02 0.85 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.14 6.18 -2.39 -0.01 1.12 16 29 H 0.07 1.08 7.16 -2.39 -0.02 1.06 16 30 H 0.09 1.01 6.39 -2.39 -0.02 0.99 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.41 6.20 -2.39 -0.01 1.40 16 33 H 0.07 0.70 6.48 -2.39 -0.02 0.68 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.40 2.60 9.12 -74.06 -0.68 1.93 16 36 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.05 1.65 6.23 -2.39 -0.01 1.64 16 38 H 0.41 10.32 5.56 -92.71 -0.52 9.81 16 39 H 0.14 3.57 6.42 -2.91 -0.02 3.55 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.10 4.64 4.98 -2.91 -0.01 4.62 16 43 H 0.29 15.53 8.29 -92.71 -0.77 14.76 16 Total: -1.00 -78.31 336.14 0.99 -77.33 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.21 Total: 28.78 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.78 Total: -29.69 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -2.17 Total: -76.67 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.09 Total: -45.78 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.68 Total: 46.03 kcal Total: -78.31 0.99 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.459 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds