Wall clock time and date at job start Tue Mar 31 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 H 1.08995 * 109.47299 * 184.80875 * 3 2 1 5 5 C 1.53003 * 109.46898 * 304.81312 * 3 2 1 6 6 C 1.53006 * 109.47022 * 296.55570 * 5 3 2 7 7 O 1.42898 * 109.46989 * 185.13070 * 6 5 3 8 8 C 1.52999 * 109.47068 * 64.80717 * 3 2 1 9 9 N 1.46499 * 109.47077 * 65.00536 * 8 3 2 10 10 C 1.34778 * 120.00116 * 179.97438 * 9 8 3 11 11 O 1.21608 * 119.99922 * 359.97438 * 10 9 8 12 12 C 1.47439 * 119.99838 * 179.97438 * 10 9 8 13 13 C 1.39225 * 120.28124 * 353.60509 * 12 10 9 14 14 C 1.38226 * 120.08719 * 180.28016 * 13 12 10 15 15 C 1.38827 * 120.67540 * 359.72448 * 14 13 12 16 16 C 1.37593 * 120.57335 * 359.97438 * 15 14 13 17 17 C 1.40713 * 119.87974 * 0.02562 * 16 15 14 18 18 C 1.40891 * 120.32405 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99696 * 147.39252 * 18 17 16 20 20 C 1.40270 * 119.99902 * 327.38326 * 18 17 16 21 21 N 1.30628 * 120.00711 * 341.05922 * 20 18 17 22 22 Si 1.86809 * 119.99662 * 161.05820 * 20 18 17 23 23 H 1.48503 * 109.47033 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47182 * 300.00239 * 22 20 18 25 25 H 1.48502 * 109.46972 * 60.00208 * 22 20 18 26 26 H 1.09003 * 109.47423 * 306.14730 * 1 2 3 27 27 H 1.09001 * 109.47496 * 66.14299 * 1 2 3 28 28 H 1.08999 * 109.47458 * 186.14263 * 1 2 3 29 29 H 1.08994 * 109.47676 * 239.99886 * 2 1 3 30 30 H 1.09004 * 109.46899 * 119.99305 * 2 1 3 31 31 H 1.08997 * 109.47188 * 56.55810 * 5 3 2 32 32 H 1.09002 * 109.47066 * 176.55895 * 5 3 2 33 33 H 1.09000 * 109.47291 * 305.13647 * 6 5 3 34 34 H 1.09007 * 109.46537 * 65.12993 * 6 5 3 35 35 H 0.96700 * 113.99383 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47617 * 305.00567 * 8 3 2 37 37 H 1.08999 * 109.47143 * 184.99838 * 8 3 2 38 38 H 0.96998 * 119.99863 * 359.97438 * 9 8 3 39 39 H 1.07993 * 119.95967 * 0.02562 * 13 12 10 40 40 H 1.08003 * 119.66144 * 179.74517 * 14 13 12 41 41 H 1.08003 * 119.71381 * 180.02562 * 15 14 13 42 42 H 1.07994 * 120.06230 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99652 * 353.60235 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 -0.0861 5 6 1.4335 2.1978 -1.1844 6 6 1.9118 1.5641 -2.4923 7 8 1.4432 2.3401 -3.5969 8 6 1.6311 2.1280 1.3053 9 7 2.3071 1.4780 2.4308 10 6 2.0972 1.9171 3.6876 11 8 1.3470 2.8532 3.8873 12 6 2.7771 1.2626 4.8204 13 6 3.5311 0.1102 4.6157 14 6 4.1621 -0.5035 5.6814 15 6 4.0586 0.0203 6.9629 16 6 3.3256 1.1614 7.1955 17 6 2.6735 1.8054 6.1278 18 6 1.9210 2.9746 6.3552 19 1 1.8665 3.7383 5.5936 20 6 1.2424 3.1465 7.5707 21 7 0.9909 2.1139 8.3303 22 14 0.6983 4.8524 8.1035 23 1 0.0080 4.7646 9.4154 24 1 1.8863 5.7345 8.2278 25 1 -0.2316 5.4140 7.0909 26 1 -0.3634 0.6062 0.8298 27 1 -0.3634 0.4156 -0.9398 28 1 -0.3634 -1.0217 0.1100 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 0.3462 2.1444 -1.1310 32 1 1.7482 3.2409 -1.1497 33 1 3.0014 1.5350 -2.5048 34 1 1.5204 0.5496 -2.5688 35 1 1.7099 1.9962 -4.4604 36 1 0.5518 2.0486 1.4348 37 1 1.9163 3.1794 1.2684 38 1 2.9057 0.7317 2.2714 39 1 3.6197 -0.3072 3.6236 40 1 4.7419 -1.3995 5.5155 41 1 4.5583 -0.4716 7.7843 42 1 3.2510 1.5619 8.1956 43 1 1.1894 1.2189 8.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:31 Heat of formation + Delta-G solvation = -93.343803 kcal Electronic energy + Delta-G solvation = -23184.035517 eV Core-core repulsion = 19806.831865 eV Total energy + Delta-G solvation = -3377.203652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.30415 -38.19134 -36.98978 -36.15839 -34.06635 -33.04518 -30.48280 -30.12846 -29.37707 -27.60906 -25.25783 -24.36834 -23.20968 -21.94479 -20.87334 -19.55598 -19.22312 -18.10357 -17.55585 -16.37988 -16.20770 -15.42515 -15.14567 -14.76078 -14.35251 -14.20177 -13.97286 -13.81039 -13.68871 -13.44983 -12.82576 -12.56707 -12.25941 -12.18196 -12.13713 -11.88163 -11.63412 -11.52654 -11.12717 -10.92594 -10.77865 -10.72940 -10.70047 -10.51822 -10.35873 -10.16115 -10.12479 -9.59959 -9.08866 -8.50058 -8.35051 -7.78477 -7.61573 -7.13868 -4.45859 2.25593 2.74216 3.21168 3.32079 3.41724 3.72737 4.04691 4.08633 4.19465 4.62167 4.64057 4.68309 4.86761 4.99819 5.10671 5.19268 5.39646 5.47326 5.49938 5.53882 5.63611 5.80407 5.82595 5.87721 5.88804 6.04664 6.09441 6.12629 6.18366 6.20379 6.38956 6.53652 6.72800 6.99844 7.13350 7.28559 7.34662 7.50118 7.61026 7.72928 7.89306 8.09494 8.21481 8.38604 8.73772 8.86178 9.37766 10.04039 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.003876 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.866486 B = 7222.120203 C = 8268.279237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.096 4.096 4 H 0.076 0.924 5 C -0.115 4.115 6 C 0.076 3.924 7 O -0.576 6.576 8 C 0.129 3.871 9 N -0.747 5.747 10 C 0.563 3.437 11 O -0.538 6.538 12 C -0.266 4.266 13 C -0.043 4.043 14 C -0.262 4.262 15 C -0.075 4.075 16 C -0.203 4.203 17 C 0.120 3.880 18 C -0.464 4.464 19 H 0.104 0.896 20 C 0.031 3.969 21 N -0.793 5.793 22 Si 1.070 2.930 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.272 1.272 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.377 0.623 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.390 0.610 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -3.779 -15.835 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.115 4.115 4 H 0.095 0.905 5 C -0.153 4.153 6 C -0.001 4.001 7 O -0.381 6.381 8 C 0.005 3.995 9 N -0.402 5.402 10 C 0.357 3.643 11 O -0.416 6.416 12 C -0.271 4.271 13 C -0.062 4.062 14 C -0.281 4.281 15 C -0.094 4.094 16 C -0.222 4.222 17 C 0.116 3.884 18 C -0.491 4.491 19 H 0.122 0.878 20 C -0.190 4.190 21 N -0.417 5.417 22 Si 0.893 3.107 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.198 1.198 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.224 0.776 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.225 0.775 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.570 -1.931 -13.918 14.063 hybrid contribution 1.419 -1.897 -1.819 2.987 sum 1.989 -3.828 -15.738 16.318 Atomic orbital electron populations 1.21896 0.95655 1.01779 1.02196 1.21586 0.96659 0.95743 1.01912 1.21342 1.00600 0.95451 0.94144 0.90541 1.21512 1.02070 1.00168 0.91589 1.22243 0.97391 0.93924 0.86588 1.86487 1.79180 1.55518 1.16958 1.21181 0.97667 0.96390 0.84298 1.46005 1.50264 1.37724 1.06231 1.18376 0.81121 0.82920 0.81901 1.90681 1.37782 1.28924 1.84228 1.19386 1.12288 1.00956 0.94480 1.20695 0.94826 0.94174 0.96468 1.20231 1.10810 1.03712 0.93365 1.20735 0.97376 0.95631 0.95668 1.21261 1.02936 0.98938 0.99105 1.17496 0.90284 0.90966 0.89680 1.21184 1.22707 1.02895 1.02305 0.87777 1.27276 0.93658 1.05939 0.92150 1.70380 1.31745 1.01947 1.37607 0.83571 0.77599 0.72590 0.76949 1.19921 1.19956 1.19750 0.91846 0.92581 0.92917 0.92062 0.91515 0.90461 0.90909 0.93766 0.93427 0.77611 0.91695 0.92199 0.77535 0.89225 0.88964 0.88919 0.87441 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.11 37.15 0.34 -1.32 16 2 C -0.12 -1.21 5.23 -26.73 -0.14 -1.35 16 3 C -0.10 -1.04 2.22 -90.62 -0.20 -1.24 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -1.18 4.70 -26.73 -0.13 -1.31 16 6 C 0.08 0.65 6.64 37.16 0.25 0.90 16 7 O -0.58 -5.37 13.66 -35.23 -0.48 -5.85 16 8 C 0.13 1.92 4.93 -4.04 -0.02 1.90 16 9 N -0.75 -13.03 5.18 -61.38 -0.32 -13.34 16 10 C 0.56 13.06 7.71 -12.51 -0.10 12.96 16 11 O -0.54 -14.34 13.59 5.27 0.07 -14.27 16 12 C -0.27 -6.48 5.92 -104.37 -0.62 -7.10 16 13 C -0.04 -0.90 9.51 -39.22 -0.37 -1.27 16 14 C -0.26 -5.48 10.03 -39.37 -0.39 -5.88 16 15 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 16 C -0.20 -5.09 7.85 -38.88 -0.31 -5.40 16 17 C 0.12 3.22 5.21 -106.54 -0.56 2.66 16 18 C -0.46 -12.86 7.68 -37.82 -0.29 -13.15 16 19 H 0.10 3.01 5.92 -52.49 -0.31 2.70 16 20 C 0.03 0.82 5.05 -17.30 -0.09 0.74 16 21 N -0.79 -21.37 12.47 55.56 0.69 -20.68 16 22 Si 1.07 22.69 29.98 -169.99 -5.10 17.59 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H 0.06 0.79 6.20 -51.93 -0.32 0.46 16 27 H 0.06 0.53 6.64 -51.93 -0.35 0.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 6.89 -51.93 -0.36 0.15 16 30 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 31 H 0.08 0.83 6.29 -51.93 -0.33 0.50 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.36 6.90 -51.92 -0.36 0.00 16 35 H 0.38 1.72 9.12 45.56 0.42 2.13 16 36 H 0.06 1.04 6.22 -51.93 -0.32 0.72 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.39 5.86 5.72 -40.82 -0.23 5.62 16 39 H 0.09 1.54 6.45 -52.49 -0.34 1.21 16 40 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.11 2.75 6.80 -52.49 -0.36 2.39 16 43 H 0.30 8.22 6.51 -40.82 -0.27 7.96 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -31.46 341.57 -8.25 -39.71 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.24 Total: 12.61 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -3.02 Total: -20.91 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.37 Total: -34.02 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.41 Total: -20.12 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.10 Total: 17.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.46 -8.25 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.632 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds