Wall clock time and date at job start Tue Mar 31 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 H 1.08995 * 109.47299 * 184.80875 * 3 2 1 5 5 C 1.53003 * 109.46898 * 304.81312 * 3 2 1 6 6 C 1.53006 * 109.47022 * 296.55570 * 5 3 2 7 7 O 1.42898 * 109.46989 * 185.13070 * 6 5 3 8 8 C 1.52999 * 109.47068 * 64.80717 * 3 2 1 9 9 N 1.46499 * 109.47077 * 65.00536 * 8 3 2 10 10 C 1.34778 * 120.00116 * 179.97438 * 9 8 3 11 11 O 1.21608 * 119.99922 * 359.97438 * 10 9 8 12 12 C 1.47439 * 119.99838 * 179.97438 * 10 9 8 13 13 C 1.39225 * 120.28124 * 353.60509 * 12 10 9 14 14 C 1.38226 * 120.08719 * 180.28016 * 13 12 10 15 15 C 1.38827 * 120.67540 * 359.72448 * 14 13 12 16 16 C 1.37593 * 120.57335 * 359.97438 * 15 14 13 17 17 C 1.40713 * 119.87974 * 0.02562 * 16 15 14 18 18 C 1.40891 * 120.32405 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99696 * 147.39252 * 18 17 16 20 20 C 1.40270 * 119.99902 * 327.38326 * 18 17 16 21 21 N 1.30628 * 120.00711 * 341.05922 * 20 18 17 22 22 Si 1.86809 * 119.99662 * 161.05820 * 20 18 17 23 23 H 1.48503 * 109.47033 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47182 * 300.00239 * 22 20 18 25 25 H 1.48502 * 109.46972 * 60.00208 * 22 20 18 26 26 H 1.09003 * 109.47423 * 306.14730 * 1 2 3 27 27 H 1.09001 * 109.47496 * 66.14299 * 1 2 3 28 28 H 1.08999 * 109.47458 * 186.14263 * 1 2 3 29 29 H 1.08994 * 109.47676 * 239.99886 * 2 1 3 30 30 H 1.09004 * 109.46899 * 119.99305 * 2 1 3 31 31 H 1.08997 * 109.47188 * 56.55810 * 5 3 2 32 32 H 1.09002 * 109.47066 * 176.55895 * 5 3 2 33 33 H 1.09000 * 109.47291 * 305.13647 * 6 5 3 34 34 H 1.09007 * 109.46537 * 65.12993 * 6 5 3 35 35 H 0.96700 * 113.99383 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47617 * 305.00567 * 8 3 2 37 37 H 1.08999 * 109.47143 * 184.99838 * 8 3 2 38 38 H 0.96998 * 119.99863 * 359.97438 * 9 8 3 39 39 H 1.07993 * 119.95967 * 0.02562 * 13 12 10 40 40 H 1.08003 * 119.66144 * 179.74517 * 14 13 12 41 41 H 1.08003 * 119.71381 * 180.02562 * 15 14 13 42 42 H 1.07994 * 120.06230 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99652 * 353.60235 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 -0.0861 5 6 1.4335 2.1978 -1.1844 6 6 1.9118 1.5641 -2.4923 7 8 1.4432 2.3401 -3.5969 8 6 1.6311 2.1280 1.3053 9 7 2.3071 1.4780 2.4308 10 6 2.0972 1.9171 3.6876 11 8 1.3470 2.8532 3.8873 12 6 2.7771 1.2626 4.8204 13 6 3.5311 0.1102 4.6157 14 6 4.1621 -0.5035 5.6814 15 6 4.0586 0.0203 6.9629 16 6 3.3256 1.1614 7.1955 17 6 2.6735 1.8054 6.1278 18 6 1.9210 2.9746 6.3552 19 1 1.8665 3.7383 5.5936 20 6 1.2424 3.1465 7.5707 21 7 0.9909 2.1139 8.3303 22 14 0.6983 4.8524 8.1035 23 1 0.0080 4.7646 9.4154 24 1 1.8863 5.7345 8.2278 25 1 -0.2316 5.4140 7.0909 26 1 -0.3634 0.6062 0.8298 27 1 -0.3634 0.4156 -0.9398 28 1 -0.3634 -1.0217 0.1100 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 0.3462 2.1444 -1.1310 32 1 1.7482 3.2409 -1.1497 33 1 3.0014 1.5350 -2.5048 34 1 1.5204 0.5496 -2.5688 35 1 1.7099 1.9962 -4.4604 36 1 0.5518 2.0486 1.4348 37 1 1.9163 3.1794 1.2684 38 1 2.9057 0.7317 2.2714 39 1 3.6197 -0.3072 3.6236 40 1 4.7419 -1.3995 5.5155 41 1 4.5583 -0.4716 7.7843 42 1 3.2510 1.5619 8.1956 43 1 1.1894 1.2189 8.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:31 Heat of formation + Delta-G solvation = -115.121037 kcal Electronic energy + Delta-G solvation = -23184.979848 eV Core-core repulsion = 19806.831865 eV Total energy + Delta-G solvation = -3378.147983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92729 -39.39609 -38.51546 -37.15053 -35.90843 -34.58242 -31.92103 -31.28468 -31.18669 -28.81882 -27.06876 -25.43265 -24.42133 -23.37739 -22.66861 -21.19643 -20.31808 -19.83206 -18.45472 -17.85305 -17.17061 -16.84072 -16.52906 -16.31501 -15.89266 -15.79697 -15.45150 -15.15432 -14.84597 -14.71681 -14.39820 -13.96927 -13.79544 -13.59591 -13.28295 -13.13483 -12.92420 -12.73349 -12.66707 -12.49808 -12.30058 -12.02605 -11.95155 -11.62922 -11.58216 -11.46277 -11.36374 -10.98497 -10.78226 -10.36741 -9.97585 -9.60738 -9.50610 -9.10429 -6.46831 0.40834 0.90694 1.45495 1.61389 1.75758 2.25619 2.30050 2.40325 2.73420 3.36206 3.56853 3.74078 3.79934 4.05144 4.21198 4.23975 4.27969 4.41142 4.43218 4.46897 4.51510 4.62779 4.67032 4.72601 4.79848 4.87281 4.88590 4.98010 5.07582 5.14360 5.19136 5.27746 5.33006 5.42549 5.49830 5.59810 5.65970 5.71764 5.89609 5.96492 6.19503 6.33706 6.69152 6.85496 6.92713 6.94177 7.61727 8.03179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.003876 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.866486 B = 7222.120203 C = 8268.279237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.081 4.081 4 H 0.093 0.907 5 C -0.115 4.115 6 C 0.079 3.921 7 O -0.599 6.599 8 C 0.127 3.873 9 N -0.722 5.722 10 C 0.556 3.444 11 O -0.582 6.582 12 C -0.284 4.284 13 C -0.040 4.040 14 C -0.245 4.245 15 C -0.072 4.072 16 C -0.229 4.229 17 C 0.095 3.905 18 C -0.510 4.510 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.817 5.817 22 Si 1.115 2.885 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.272 1.272 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.406 0.594 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -6.082 -18.115 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.112 0.888 5 C -0.153 4.153 6 C 0.002 3.998 7 O -0.408 6.408 8 C 0.003 3.997 9 N -0.377 5.377 10 C 0.349 3.651 11 O -0.464 6.464 12 C -0.289 4.289 13 C -0.058 4.058 14 C -0.264 4.264 15 C -0.090 4.090 16 C -0.248 4.248 17 C 0.091 3.909 18 C -0.538 4.538 19 H 0.097 0.903 20 C -0.218 4.218 21 N -0.441 5.441 22 Si 0.932 3.068 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.198 1.198 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.243 0.757 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.411 -4.285 -16.255 16.982 hybrid contribution 0.986 -1.375 -1.329 2.152 sum 3.397 -5.660 -17.583 18.782 Atomic orbital electron populations 1.21888 0.96377 1.01707 1.01573 1.21607 0.95981 0.94933 1.03097 1.21229 1.01559 0.95655 0.91553 0.88832 1.21472 1.01535 0.99630 0.92712 1.22207 0.98183 0.94104 0.85322 1.86432 1.79637 1.56375 1.18357 1.21333 0.96731 0.96119 0.85526 1.45725 1.49548 1.37408 1.05000 1.18466 0.80667 0.82494 0.83492 1.90661 1.39674 1.30875 1.85213 1.19797 1.12754 1.02202 0.94161 1.21140 0.93146 0.92544 0.99015 1.20815 1.09114 1.04165 0.92304 1.21160 0.95909 0.94288 0.97667 1.21217 1.04715 1.00768 0.98119 1.17898 0.90287 0.91250 0.91459 1.21112 1.25828 1.03947 1.02930 0.90306 1.28466 0.92844 1.08551 0.91928 1.70488 1.34137 1.01435 1.38061 0.83038 0.77831 0.69031 0.76885 1.18718 1.18345 1.19769 0.94590 0.91641 0.92201 0.89102 0.91985 0.91371 0.92224 0.92345 0.91834 0.75250 0.93129 0.93698 0.75653 0.84631 0.84472 0.85791 0.89225 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.11 71.98 0.66 -2.39 16 2 C -0.12 -1.99 5.23 30.59 0.16 -1.83 16 3 C -0.08 -1.56 2.22 -10.79 -0.02 -1.58 16 4 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.12 -2.17 4.70 30.60 0.14 -2.03 16 6 C 0.08 1.11 6.64 71.98 0.48 1.59 16 7 O -0.60 -9.72 13.66 -148.98 -2.04 -11.76 16 8 C 0.13 3.75 4.93 86.38 0.43 4.18 16 9 N -0.72 -24.48 5.18 -466.36 -2.42 -26.90 16 10 C 0.56 26.26 7.71 86.67 0.67 26.93 16 11 O -0.58 -32.76 13.59 -4.06 -0.06 -32.82 16 12 C -0.28 -13.86 5.92 -19.70 -0.12 -13.97 16 13 C -0.04 -1.55 9.51 22.50 0.21 -1.33 16 14 C -0.25 -9.21 10.03 22.41 0.22 -8.98 16 15 C -0.07 -3.03 10.01 22.26 0.22 -2.80 16 16 C -0.23 -11.71 7.85 22.72 0.18 -11.53 16 17 C 0.10 5.27 5.21 -21.11 -0.11 5.16 16 18 C -0.51 -30.07 7.68 23.41 0.18 -29.89 16 19 H 0.08 4.92 5.92 -2.91 -0.02 4.90 16 20 C 0.00 -0.14 5.05 85.37 0.43 0.29 16 21 N -0.82 -46.33 12.47 21.88 0.27 -46.06 16 22 Si 1.11 48.01 29.98 68.60 2.06 50.07 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H 0.04 0.88 6.20 -2.39 -0.01 0.87 16 27 H 0.06 1.12 6.64 -2.39 -0.02 1.11 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.06 6.89 -2.39 -0.02 1.04 16 30 H 0.06 1.11 7.08 -2.39 -0.02 1.10 16 31 H 0.07 1.40 6.29 -2.39 -0.02 1.38 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.70 6.90 -2.38 -0.02 0.68 16 35 H 0.40 2.53 9.12 -74.06 -0.68 1.86 16 36 H 0.05 1.67 6.22 -2.39 -0.01 1.66 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.41 10.96 5.72 -92.71 -0.53 10.43 16 39 H 0.14 3.95 6.45 -2.91 -0.02 3.93 16 40 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.09 4.81 6.80 -2.91 -0.02 4.79 16 43 H 0.28 16.52 6.51 -92.71 -0.60 15.91 16 Total: -1.00 -73.75 341.57 1.55 -72.19 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.00 Total: 33.46 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 3.73 Total: -38.20 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.15 Total: -72.96 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.09 Total: -44.57 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.06 Total: 50.07 kcal Total: -73.75 1.55 -72.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.927 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds