Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00307 * 2 1 4 4 C 1.53003 * 109.47225 * 270.00008 * 3 2 1 5 5 C 1.52998 * 109.46867 * 299.99696 * 4 3 2 6 6 C 1.53004 * 109.47067 * 60.00006 * 4 3 2 7 7 C 1.52998 * 109.47105 * 179.97438 * 4 3 2 8 8 O 1.42901 * 109.47325 * 179.97438 * 7 4 3 9 9 C 1.34783 * 119.99959 * 179.97438 * 2 1 3 10 10 O 1.21607 * 119.99835 * 184.29246 * 9 2 1 11 11 C 1.47429 * 119.99857 * 4.29856 * 9 2 1 12 12 C 1.39235 * 120.28364 * 308.14164 * 11 9 2 13 13 C 1.38216 * 120.08985 * 180.28400 * 12 11 9 14 14 C 1.38826 * 120.68039 * 359.71464 * 13 12 11 15 15 C 1.37592 * 120.56609 * 0.02562 * 14 13 12 16 16 C 1.40700 * 119.88634 * 0.02562 * 15 14 13 17 17 C 1.40896 * 120.33179 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00113 * 214.54207 * 17 16 15 19 19 C 1.40272 * 119.99669 * 34.54063 * 17 16 15 20 20 N 1.30635 * 120.00048 * 23.65092 * 19 17 16 21 21 Si 1.86802 * 119.99990 * 203.65144 * 19 17 16 22 22 H 1.48502 * 109.47183 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46788 * 299.99707 * 21 19 17 24 24 H 1.48490 * 109.47214 * 59.99675 * 21 19 17 25 25 H 1.08993 * 109.47199 * 265.57048 * 1 2 3 26 26 H 1.09000 * 109.47028 * 25.56926 * 1 2 3 27 27 H 1.08999 * 109.46908 * 145.56771 * 1 2 3 28 28 H 1.09011 * 109.47013 * 30.00125 * 3 2 1 29 29 H 1.08999 * 109.47796 * 149.99589 * 3 2 1 30 30 H 1.08998 * 109.46818 * 60.00305 * 5 4 3 31 31 H 1.09000 * 109.46490 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47092 * 299.99949 * 5 4 3 33 33 H 1.08998 * 109.47317 * 59.99599 * 6 4 3 34 34 H 1.08991 * 109.47003 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.46585 * 300.00115 * 6 4 3 36 36 H 1.09001 * 109.47465 * 300.00400 * 7 4 3 37 37 H 1.09005 * 109.47397 * 60.00178 * 7 4 3 38 38 H 0.96694 * 114.00239 * 179.97438 * 8 7 4 39 39 H 1.07998 * 119.95119 * 359.97438 * 12 11 9 40 40 H 1.08007 * 119.65697 * 179.73612 * 13 12 11 41 41 H 1.07994 * 119.71481 * 180.02562 * 14 13 12 42 42 H 1.08007 * 120.05556 * 180.02562 * 15 14 13 43 43 H 0.96996 * 120.00087 * 4.43999 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2795 0.6440 -2.1637 6 6 1.1157 1.8934 -2.1638 7 6 3.2171 3.0356 -1.4425 8 8 3.4559 3.4479 -2.7897 9 6 2.1389 -1.1673 0.0005 10 8 3.3524 -1.1687 0.0793 11 6 1.4049 -2.4423 -0.0946 12 6 0.3517 -2.7127 0.7751 13 6 -0.3300 -3.9118 0.6862 14 6 0.0194 -4.8560 -0.2696 15 6 1.0521 -4.6152 -1.1464 16 6 1.7629 -3.4029 -1.0764 17 6 2.8217 -3.1463 -1.9699 18 1 3.6808 -2.5808 -1.6408 19 6 2.7597 -3.6253 -3.2868 20 7 1.6021 -3.8863 -3.8331 21 14 4.3325 -3.8902 -4.2593 22 1 3.9973 -4.3973 -5.6142 23 1 5.0626 -2.6026 -4.3799 24 1 5.1878 -4.8803 -3.5572 25 1 -0.3633 -0.0794 1.0245 26 1 -0.3633 0.9270 -0.4435 27 1 -0.3633 -0.8476 -0.5811 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5139 30 1 2.7344 -0.2999 -2.1637 31 1 3.4615 0.9589 -3.1912 32 1 4.2318 0.5137 -1.6499 33 1 0.5266 2.6530 -1.6499 34 1 1.2974 2.2076 -3.1915 35 1 0.5707 0.9494 -2.1637 36 1 2.6277 3.7951 -0.9287 37 1 4.1696 2.9057 -0.9285 38 1 3.9372 4.2830 -2.8661 39 1 0.0703 -1.9866 1.5234 40 1 -1.1431 -4.1160 1.3671 41 1 -0.5241 -5.7876 -0.3255 42 1 1.3167 -5.3554 -1.8870 43 1 0.7833 -3.6884 -3.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601614096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -78.920181 kcal Electronic energy + Delta-G solvation = -24762.499019 eV Core-core repulsion = 21385.920822 eV Total energy + Delta-G solvation = -3376.578196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75614 -37.95542 -36.89529 -35.34837 -34.04012 -33.29529 -30.06748 -29.44696 -27.60157 -26.65892 -25.95145 -25.62193 -24.63412 -21.85320 -21.04371 -19.22030 -18.39548 -17.74233 -17.30498 -16.30079 -15.77635 -15.08668 -14.97120 -14.82477 -14.29006 -14.04859 -13.60347 -13.51287 -12.93409 -12.86910 -12.69275 -12.44125 -12.36494 -12.16487 -12.04947 -11.82425 -11.29784 -11.22921 -11.11702 -10.89033 -10.75423 -10.65434 -10.48872 -10.37401 -10.24681 -10.11822 -9.88710 -9.56820 -9.03949 -8.68048 -8.03283 -7.74865 -7.64377 -7.20716 -4.51482 2.38495 2.73418 3.19496 3.28035 3.39512 3.53630 3.89040 4.02507 4.40366 4.54218 4.94908 5.11366 5.23874 5.35489 5.38382 5.51338 5.55163 5.67346 5.73251 5.82680 5.86105 6.00970 6.11719 6.14054 6.19612 6.20538 6.31899 6.44846 6.45584 6.63012 6.71159 6.75719 6.98686 7.07578 7.11801 7.29247 7.50983 7.62455 7.66763 7.71673 7.88225 8.02370 8.17007 8.22325 8.69787 8.82056 9.17547 10.01916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.007387 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.458513 B = 3789.582777 C = 5302.793181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.619 5.619 3 C 0.130 3.870 4 C -0.079 4.079 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.090 3.910 8 O -0.566 6.566 9 C 0.591 3.409 10 O -0.544 6.544 11 C -0.256 4.256 12 C -0.049 4.049 13 C -0.256 4.256 14 C -0.077 4.077 15 C -0.203 4.203 16 C 0.132 3.868 17 C -0.507 4.507 18 H 0.097 0.903 19 C 0.040 3.960 20 N -0.790 5.790 21 Si 1.061 2.939 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.373 0.627 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 11.020 3.228 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C 0.006 3.994 4 C -0.081 4.081 5 C -0.188 4.188 6 C -0.193 4.193 7 C 0.012 3.988 8 O -0.370 6.370 9 C 0.384 3.616 10 O -0.421 6.421 11 C -0.260 4.260 12 C -0.068 4.068 13 C -0.275 4.275 14 C -0.095 4.095 15 C -0.222 4.222 16 C 0.128 3.872 17 C -0.534 4.534 18 H 0.115 0.885 19 C -0.182 4.182 20 N -0.413 5.413 21 Si 0.884 3.116 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.218 0.782 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.720 9.898 1.661 10.062 hybrid contribution -0.571 1.088 1.726 2.119 sum -1.291 10.986 3.387 11.568 Atomic orbital electron populations 1.21871 0.80303 1.02930 1.00938 1.47675 1.06406 1.05331 1.75906 1.21228 0.97812 0.85510 0.94847 1.21003 0.96263 0.94246 0.96561 1.21776 0.99607 0.98313 0.99133 1.21846 0.95709 1.01267 1.00455 1.22125 0.98191 0.95397 0.83117 1.86531 1.79711 1.43826 1.26911 1.18351 0.86732 0.83154 0.73411 1.90640 1.14383 1.87346 1.49757 1.19417 1.02954 0.95328 1.08299 1.20701 0.93550 0.96062 0.96450 1.20235 1.05499 0.97103 1.04698 1.20730 0.96318 0.97320 0.95160 1.21159 1.00731 0.97580 1.02712 1.17399 0.90310 0.88899 0.90543 1.20877 1.04765 1.30885 0.96911 0.88505 1.27085 1.03362 0.91115 0.96664 1.70412 1.00102 1.30985 1.39771 0.83684 0.73627 0.78227 0.76013 1.19892 1.19811 1.19829 0.93658 0.91833 0.90279 0.91543 0.90124 0.90979 0.93139 0.92808 0.93686 0.92240 0.91951 0.94168 0.93731 0.78168 0.88812 0.88928 0.88971 0.87749 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 7.88 59.85 0.47 1.74 16 2 N -0.62 -11.19 2.40 -182.85 -0.44 -11.63 16 3 C 0.13 2.01 4.59 -4.04 -0.02 1.99 16 4 C -0.08 -1.23 0.68 -154.51 -0.10 -1.33 16 5 C -0.13 -2.56 7.06 37.16 0.26 -2.30 16 6 C -0.14 -2.02 7.09 37.16 0.26 -1.75 16 7 C 0.09 1.13 5.91 37.16 0.22 1.35 16 8 O -0.57 -7.19 12.31 -35.23 -0.43 -7.63 16 9 C 0.59 13.37 4.94 -12.51 -0.06 13.31 16 10 O -0.54 -13.78 13.46 5.27 0.07 -13.70 16 11 C -0.26 -6.09 4.83 -104.37 -0.50 -6.60 16 12 C -0.05 -1.03 7.85 -39.22 -0.31 -1.34 16 13 C -0.26 -5.32 10.03 -39.37 -0.39 -5.71 16 14 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 15 C -0.20 -5.00 8.04 -38.89 -0.31 -5.31 16 16 C 0.13 3.44 5.11 -106.54 -0.54 2.90 16 17 C -0.51 -13.57 8.02 -37.81 -0.30 -13.88 16 18 H 0.10 2.74 6.33 -52.49 -0.33 2.41 16 19 C 0.04 1.03 4.93 -17.30 -0.09 0.94 16 20 N -0.79 -20.63 12.68 55.56 0.70 -19.93 16 21 Si 1.06 22.47 30.00 -169.99 -5.10 17.37 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16 26 H 0.06 0.81 6.25 -51.93 -0.32 0.48 16 27 H 0.08 1.37 6.35 -51.93 -0.33 1.04 16 28 H 0.07 0.82 8.07 -51.92 -0.42 0.40 16 29 H 0.08 1.35 7.37 -51.93 -0.38 0.97 16 30 H 0.07 1.66 6.00 -51.93 -0.31 1.35 16 31 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 32 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 33 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.06 1.02 6.06 -51.93 -0.31 0.71 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.37 2.84 9.12 45.56 0.42 3.25 16 39 H 0.09 1.73 6.62 -52.49 -0.35 1.38 16 40 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.10 2.64 7.13 -52.48 -0.37 2.26 16 43 H 0.30 7.88 6.89 -40.82 -0.28 7.60 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -30.05 336.21 -7.43 -37.49 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.49 Total: 11.04 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.82 Total: -18.07 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.27 Total: -31.56 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.36 Total: -21.33 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.10 Total: 17.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.05 -7.43 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.433 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds