Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00307 * 2 1 4 4 C 1.53003 * 109.47225 * 270.00008 * 3 2 1 5 5 C 1.52998 * 109.46867 * 299.99696 * 4 3 2 6 6 C 1.53004 * 109.47067 * 60.00006 * 4 3 2 7 7 C 1.52998 * 109.47105 * 179.97438 * 4 3 2 8 8 O 1.42901 * 109.47325 * 179.97438 * 7 4 3 9 9 C 1.34783 * 119.99959 * 179.97438 * 2 1 3 10 10 O 1.21607 * 119.99835 * 184.29246 * 9 2 1 11 11 C 1.47429 * 119.99857 * 4.29856 * 9 2 1 12 12 C 1.39235 * 120.28364 * 308.14164 * 11 9 2 13 13 C 1.38216 * 120.08985 * 180.28400 * 12 11 9 14 14 C 1.38826 * 120.68039 * 359.71464 * 13 12 11 15 15 C 1.37592 * 120.56609 * 0.02562 * 14 13 12 16 16 C 1.40700 * 119.88634 * 0.02562 * 15 14 13 17 17 C 1.40896 * 120.33179 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00113 * 214.54207 * 17 16 15 19 19 C 1.40272 * 119.99669 * 34.54063 * 17 16 15 20 20 N 1.30635 * 120.00048 * 23.65092 * 19 17 16 21 21 Si 1.86802 * 119.99990 * 203.65144 * 19 17 16 22 22 H 1.48502 * 109.47183 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46788 * 299.99707 * 21 19 17 24 24 H 1.48490 * 109.47214 * 59.99675 * 21 19 17 25 25 H 1.08993 * 109.47199 * 265.57048 * 1 2 3 26 26 H 1.09000 * 109.47028 * 25.56926 * 1 2 3 27 27 H 1.08999 * 109.46908 * 145.56771 * 1 2 3 28 28 H 1.09011 * 109.47013 * 30.00125 * 3 2 1 29 29 H 1.08999 * 109.47796 * 149.99589 * 3 2 1 30 30 H 1.08998 * 109.46818 * 60.00305 * 5 4 3 31 31 H 1.09000 * 109.46490 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47092 * 299.99949 * 5 4 3 33 33 H 1.08998 * 109.47317 * 59.99599 * 6 4 3 34 34 H 1.08991 * 109.47003 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.46585 * 300.00115 * 6 4 3 36 36 H 1.09001 * 109.47465 * 300.00400 * 7 4 3 37 37 H 1.09005 * 109.47397 * 60.00178 * 7 4 3 38 38 H 0.96694 * 114.00239 * 179.97438 * 8 7 4 39 39 H 1.07998 * 119.95119 * 359.97438 * 12 11 9 40 40 H 1.08007 * 119.65697 * 179.73612 * 13 12 11 41 41 H 1.07994 * 119.71481 * 180.02562 * 14 13 12 42 42 H 1.08007 * 120.05556 * 180.02562 * 15 14 13 43 43 H 0.96996 * 120.00087 * 4.43999 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2795 0.6440 -2.1637 6 6 1.1157 1.8934 -2.1638 7 6 3.2171 3.0356 -1.4425 8 8 3.4559 3.4479 -2.7897 9 6 2.1389 -1.1673 0.0005 10 8 3.3524 -1.1687 0.0793 11 6 1.4049 -2.4423 -0.0946 12 6 0.3517 -2.7127 0.7751 13 6 -0.3300 -3.9118 0.6862 14 6 0.0194 -4.8560 -0.2696 15 6 1.0521 -4.6152 -1.1464 16 6 1.7629 -3.4029 -1.0764 17 6 2.8217 -3.1463 -1.9699 18 1 3.6808 -2.5808 -1.6408 19 6 2.7597 -3.6253 -3.2868 20 7 1.6021 -3.8863 -3.8331 21 14 4.3325 -3.8902 -4.2593 22 1 3.9973 -4.3973 -5.6142 23 1 5.0626 -2.6026 -4.3799 24 1 5.1878 -4.8803 -3.5572 25 1 -0.3633 -0.0794 1.0245 26 1 -0.3633 0.9270 -0.4435 27 1 -0.3633 -0.8476 -0.5811 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5139 30 1 2.7344 -0.2999 -2.1637 31 1 3.4615 0.9589 -3.1912 32 1 4.2318 0.5137 -1.6499 33 1 0.5266 2.6530 -1.6499 34 1 1.2974 2.2076 -3.1915 35 1 0.5707 0.9494 -2.1637 36 1 2.6277 3.7951 -0.9287 37 1 4.1696 2.9057 -0.9285 38 1 3.9372 4.2830 -2.8661 39 1 0.0703 -1.9866 1.5234 40 1 -1.1431 -4.1160 1.3671 41 1 -0.5241 -5.7876 -0.3255 42 1 1.3167 -5.3554 -1.8870 43 1 0.7833 -3.6884 -3.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601614096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -98.603204 kcal Electronic energy + Delta-G solvation = -24763.352538 eV Core-core repulsion = 21385.920822 eV Total energy + Delta-G solvation = -3377.431716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32210 -39.43435 -38.41955 -36.73257 -35.83534 -34.71611 -31.83423 -31.26673 -28.86861 -28.16447 -27.34825 -27.07460 -26.19821 -23.51902 -22.86719 -20.78489 -19.85163 -19.47061 -18.34383 -17.91421 -17.26109 -16.63714 -16.58334 -16.06597 -15.93215 -15.70656 -15.09259 -14.96025 -14.51478 -14.26396 -14.18685 -14.01536 -13.90581 -13.79197 -13.50204 -13.21511 -12.98320 -12.78511 -12.54070 -12.52837 -12.45892 -12.07710 -12.03163 -11.92475 -11.76694 -11.52267 -11.36729 -10.92315 -10.83717 -10.45291 -9.61286 -9.50281 -9.45104 -9.15556 -6.49246 0.57650 0.91116 1.41738 1.55129 1.70518 1.96469 2.25645 2.33551 2.66585 3.41815 3.48701 3.74191 3.90082 4.07546 4.11825 4.23534 4.37863 4.39104 4.44084 4.51653 4.56357 4.60891 4.73282 4.79008 4.82336 4.83877 4.90791 4.93297 5.04806 5.07917 5.15480 5.15857 5.40249 5.44074 5.46179 5.63001 5.74704 5.78195 5.90357 5.95651 6.17390 6.34475 6.54197 6.80727 6.88140 6.98018 7.49479 8.03281 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.007387 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.458513 B = 3789.582777 C = 5302.793181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.127 3.873 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.129 4.129 7 C 0.096 3.904 8 O -0.588 6.588 9 C 0.584 3.416 10 O -0.584 6.584 11 C -0.268 4.268 12 C -0.047 4.047 13 C -0.239 4.239 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.106 3.894 17 C -0.541 4.541 18 H 0.068 0.932 19 C 0.011 3.989 20 N -0.810 5.810 21 Si 1.100 2.900 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.263 1.263 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.395 0.605 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 13.095 5.128 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.005 3.995 4 C -0.080 4.080 5 C -0.176 4.176 6 C -0.186 4.186 7 C 0.017 3.983 8 O -0.396 6.396 9 C 0.377 3.623 10 O -0.465 6.465 11 C -0.272 4.272 12 C -0.066 4.066 13 C -0.257 4.257 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.102 3.898 17 C -0.569 4.569 18 H 0.086 0.914 19 C -0.206 4.206 20 N -0.433 5.433 21 Si 0.919 3.081 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.188 1.188 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.245 0.755 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.104 0.896 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.760 12.013 3.572 12.834 hybrid contribution -0.092 0.503 1.311 1.407 sum -2.852 12.517 4.883 13.735 Atomic orbital electron populations 1.22065 0.78211 1.03583 1.02467 1.47657 1.07760 1.04938 1.74008 1.21459 0.97861 0.85170 0.95040 1.21009 0.96423 0.94579 0.96008 1.21607 0.98902 0.98019 0.99078 1.21775 0.95360 1.01180 1.00256 1.22040 0.98421 0.94337 0.83458 1.86474 1.80333 1.45665 1.27103 1.18323 0.86275 0.84313 0.73438 1.90609 1.16010 1.88063 1.51854 1.19830 1.03609 0.95821 1.07937 1.21074 0.92307 0.97061 0.96156 1.20767 1.05319 0.95895 1.03760 1.21103 0.95247 0.98881 0.94240 1.21119 1.02484 0.97087 1.03761 1.17726 0.90687 0.89924 0.91432 1.20717 1.05039 1.33067 0.98116 0.91431 1.28111 1.05167 0.90244 0.97123 1.70510 0.99870 1.33484 1.39472 0.83215 0.70967 0.78423 0.75537 1.18610 1.19643 1.18804 0.90879 0.88703 0.92821 0.86639 0.91704 0.95176 0.94046 0.94814 0.89983 0.93401 0.94095 0.90399 0.93659 0.75523 0.85340 0.84758 0.85985 0.89613 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 7.88 127.77 1.01 3.18 16 2 N -0.61 -21.37 2.40 -850.65 -2.04 -23.41 16 3 C 0.13 3.67 4.59 86.38 0.40 4.06 16 4 C -0.08 -2.35 0.68 -52.18 -0.04 -2.38 16 5 C -0.12 -4.87 7.06 71.98 0.51 -4.36 16 6 C -0.13 -3.56 7.09 71.98 0.51 -3.05 16 7 C 0.10 2.13 5.91 71.98 0.43 2.56 16 8 O -0.59 -13.77 12.31 -148.98 -1.83 -15.60 16 9 C 0.58 27.02 4.94 86.66 0.43 27.45 16 10 O -0.58 -31.15 13.46 -4.05 -0.05 -31.20 16 11 C -0.27 -12.93 4.83 -19.70 -0.10 -13.03 16 12 C -0.05 -1.90 7.85 22.50 0.18 -1.72 16 13 C -0.24 -9.11 10.03 22.41 0.22 -8.89 16 14 C -0.08 -3.24 10.01 22.26 0.22 -3.01 16 15 C -0.23 -11.44 8.04 22.72 0.18 -11.26 16 16 C 0.11 5.76 5.11 -21.11 -0.11 5.65 16 17 C -0.54 -31.12 8.02 23.42 0.19 -30.93 16 18 H 0.07 4.18 6.33 -2.91 -0.02 4.17 16 19 C 0.01 0.58 4.93 85.37 0.42 1.00 16 20 N -0.81 -44.77 12.68 21.88 0.28 -44.49 16 21 Si 1.10 47.90 30.00 68.60 2.06 49.95 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H 0.07 1.63 7.23 -2.39 -0.02 1.62 16 26 H 0.09 2.02 6.25 -2.39 -0.01 2.01 16 27 H 0.05 1.77 6.35 -2.39 -0.02 1.76 16 28 H 0.12 2.25 8.07 -2.38 -0.02 2.23 16 29 H 0.06 2.11 7.37 -2.39 -0.02 2.09 16 30 H 0.03 1.47 6.00 -2.39 -0.01 1.45 16 31 H 0.04 1.69 7.68 -2.39 -0.02 1.68 16 32 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 33 H 0.08 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.05 1.43 7.68 -2.39 -0.02 1.41 16 35 H 0.04 1.29 6.06 -2.39 -0.01 1.28 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 38 H 0.40 5.03 9.12 -74.06 -0.68 4.35 16 39 H 0.13 4.20 6.62 -2.91 -0.02 4.18 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.09 4.58 7.13 -2.91 -0.02 4.56 16 43 H 0.28 16.01 6.89 -92.71 -0.64 15.37 16 Total: -1.00 -72.13 336.21 3.33 -68.80 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.47 Total: 30.70 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 4.45 Total: -34.75 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.76 Total: -67.90 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.89 Total: -46.80 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.06 Total: 49.95 kcal Total: -72.13 3.33 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.806 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds