Wall clock time and date at job start Tue Mar 31 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47529 * 2 1 4 4 H 1.09007 * 110.56261 * 307.67770 * 3 2 1 5 5 C 1.54475 * 110.51162 * 70.35503 * 3 2 1 6 6 O 1.44436 * 104.80184 * 142.62462 * 5 3 2 7 7 C 1.44424 * 105.27084 * 319.49206 * 6 5 3 8 8 C 1.54473 * 104.80778 * 40.50899 * 7 6 5 9 9 H 1.09010 * 110.50948 * 94.80237 * 8 7 6 10 10 N 1.46899 * 110.51485 * 217.37346 * 8 7 6 11 11 C 1.46903 * 110.99910 * 273.54940 * 10 8 7 12 12 C 1.50705 * 109.46683 * 179.97438 * 11 10 8 13 13 C 1.38326 * 119.96652 * 269.97770 * 12 11 10 14 14 C 1.38275 * 120.13839 * 180.02562 * 13 12 11 15 15 C 1.38115 * 120.07093 * 359.97438 * 14 13 12 16 16 C 1.38855 * 119.92910 * 0.02562 * 15 14 13 17 17 O 1.35760 * 120.06910 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99715 * 354.46846 * 17 16 15 19 19 H 1.07997 * 120.00242 * 5.05103 * 18 17 16 20 20 C 1.38656 * 119.99822 * 185.05388 * 18 17 16 21 21 N 1.31560 * 119.99706 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46918 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47180 * 210.00205 * 22 20 18 25 25 H 1.48499 * 109.47368 * 330.00347 * 22 20 18 26 26 C 1.38076 * 119.96452 * 90.00130 * 12 11 10 27 27 H 1.09002 * 109.47114 * 300.00440 * 1 2 3 28 28 H 1.09001 * 109.47140 * 59.99494 * 1 2 3 29 29 H 1.08995 * 109.47713 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46865 * 240.00041 * 2 1 3 31 31 H 1.09001 * 109.47140 * 120.00505 * 2 1 3 32 32 H 1.08997 * 110.37339 * 23.79870 * 5 3 2 33 33 H 1.08997 * 110.37761 * 261.45626 * 5 3 2 34 34 H 1.09005 * 110.37208 * 281.67701 * 7 6 5 35 35 H 1.09003 * 110.37138 * 159.34695 * 7 6 5 36 36 H 1.00908 * 110.99811 * 37.50200 * 10 8 7 37 37 H 1.08995 * 109.47427 * 60.00160 * 11 10 8 38 38 H 1.08991 * 109.47141 * 299.99462 * 11 10 8 39 39 H 1.08006 * 119.92622 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.96297 * 180.27685 * 14 13 12 41 41 H 1.07999 * 120.03517 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99420 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03416 * 359.95187 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5796 2.0114 -0.8078 5 6 1.7620 2.1149 1.3626 6 8 2.9180 2.9457 1.6069 7 6 4.0497 2.1592 1.1751 8 6 3.5797 1.4722 -0.1261 9 1 3.8825 2.0547 -0.9964 10 7 4.1158 0.1071 -0.2102 11 6 5.4540 0.1034 -0.8163 12 6 5.9703 -1.3107 -0.8850 13 6 6.6993 -1.8321 0.1687 14 6 7.1752 -3.1290 0.1091 15 6 6.9235 -3.9082 -1.0031 16 6 6.1920 -3.3877 -2.0624 17 8 5.9433 -4.1510 -3.1573 18 6 6.5300 -5.3640 -3.2039 19 1 7.0979 -5.7221 -2.3579 20 6 6.4044 -6.1518 -4.3380 21 7 5.7123 -5.7157 -5.3683 22 14 7.2179 -7.8320 -4.4029 23 1 6.2758 -8.8582 -3.8884 24 1 7.5805 -8.1525 -5.8068 25 1 8.4439 -7.8212 -3.5651 26 6 5.7157 -2.0845 -1.9999 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6640 1.3618 2.1445 33 1 0.8608 2.7255 1.3076 34 1 4.3026 1.4128 1.9283 35 1 4.9060 2.8037 0.9761 36 1 4.1288 -0.3328 0.6978 37 1 6.1291 0.7072 -0.2099 38 1 5.3985 0.5196 -1.8221 39 1 6.8972 -1.2248 1.0396 40 1 7.7403 -3.5347 0.9353 41 1 7.2951 -4.9212 -1.0488 42 1 5.6247 -6.2666 -6.1619 43 1 5.1461 -1.6770 -2.8220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699533700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:00 Heat of formation + Delta-G solvation = -52.618019 kcal Electronic energy + Delta-G solvation = -22886.030376 eV Core-core repulsion = 19510.592726 eV Total energy + Delta-G solvation = -3375.437649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09204 -39.02851 -36.92348 -35.42725 -34.16538 -32.28516 -31.06987 -29.27047 -28.62389 -27.84789 -25.47424 -24.51548 -23.78855 -22.32021 -21.62477 -20.63795 -19.70886 -17.76384 -17.08841 -16.60937 -16.11649 -15.77986 -15.21627 -14.90807 -14.61630 -14.44919 -14.17691 -13.96768 -13.62840 -13.52157 -13.17275 -13.06825 -12.71964 -12.38389 -12.37232 -12.02369 -11.87004 -11.57255 -11.41754 -11.26270 -11.01611 -10.82913 -10.70916 -10.65657 -10.56998 -10.49715 -10.40368 -10.01266 -9.33645 -8.84592 -8.43160 -8.07747 -7.24198 -6.44279 -4.03431 2.09868 2.35987 3.12664 3.13682 3.18447 3.69844 3.96726 4.22559 4.43757 4.55254 4.66548 4.72883 4.91131 5.03454 5.08239 5.14005 5.19567 5.29516 5.32855 5.37003 5.49520 5.53214 5.58535 5.67311 5.71234 5.74209 5.83280 5.86746 5.91130 6.07740 6.16968 6.24308 6.35860 6.46927 6.54060 6.65147 6.91286 6.99551 7.07093 7.24540 7.33464 7.39389 7.44758 7.81403 8.00599 9.01378 9.71877 10.73770 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003169 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.048413 B = 8833.603863 C = 9556.299235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C -0.113 4.113 4 H 0.083 0.917 5 C 0.046 3.954 6 O -0.377 6.377 7 C 0.016 3.984 8 C 0.058 3.942 9 H 0.093 0.907 10 N -0.665 5.665 11 C 0.104 3.896 12 C -0.049 4.049 13 C -0.208 4.208 14 C -0.076 4.076 15 C -0.232 4.232 16 C 0.152 3.848 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.165 4.165 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.344 0.656 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.270 0.730 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 12.360 11.652 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.132 4.132 4 H 0.102 0.898 5 C -0.031 4.031 6 O -0.295 6.295 7 C -0.063 4.063 8 C -0.053 4.053 9 H 0.111 0.889 10 N -0.296 5.296 11 C -0.024 4.024 12 C -0.049 4.049 13 C -0.227 4.227 14 C -0.094 4.094 15 C -0.252 4.252 16 C 0.098 3.902 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.185 4.185 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.428 12.390 10.700 17.247 hybrid contribution 1.031 -0.774 0.695 1.464 sum -4.397 11.617 11.395 16.856 Atomic orbital electron populations 1.21861 0.96651 1.01669 1.01143 1.21312 0.94173 0.94494 1.03903 1.22581 0.94750 0.98136 0.97721 0.89817 1.23602 0.89552 0.94037 0.95900 1.89112 1.15727 1.39387 1.85288 1.24273 0.90517 0.95687 0.95815 1.23007 0.94880 0.89847 0.97596 0.88921 1.60622 1.23933 1.15999 1.29049 1.20862 0.88019 0.93737 0.99744 1.19122 0.97585 0.94245 0.93989 1.20411 1.06592 0.96606 0.99116 1.20683 0.98108 0.93831 0.96769 1.21182 1.06935 1.01580 0.95454 1.19363 0.92385 0.90729 0.87695 1.83984 1.61968 1.27293 1.34917 1.21315 1.32256 0.90786 1.02474 0.89136 1.25278 0.97087 0.99778 0.94352 1.70042 1.37658 1.37448 1.04598 0.85725 0.79226 0.80485 0.78068 1.19887 1.20261 1.19228 1.20016 1.06557 0.92306 0.99657 0.93393 0.92939 0.92647 0.89551 0.92180 0.92212 0.89323 0.92310 0.89256 0.83610 0.94767 0.90330 0.88133 0.87610 0.85685 0.92046 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.79 37.16 0.36 -1.05 16 2 C -0.10 -1.04 4.36 -26.73 -0.12 -1.16 16 3 C -0.11 -1.09 3.11 -89.06 -0.28 -1.36 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C 0.05 0.43 6.51 37.93 0.25 0.68 16 6 O -0.38 -4.32 11.65 -35.23 -0.41 -4.73 16 7 C 0.02 0.16 7.24 37.93 0.27 0.43 16 8 C 0.06 0.59 3.40 -66.15 -0.22 0.37 16 9 H 0.09 0.95 7.88 -51.92 -0.41 0.54 16 10 N -0.66 -7.87 4.53 -106.34 -0.48 -8.35 16 11 C 0.10 1.37 5.66 -4.97 -0.03 1.35 16 12 C -0.05 -0.83 5.39 -104.65 -0.56 -1.39 16 13 C -0.21 -3.45 9.70 -39.54 -0.38 -3.83 16 14 C -0.08 -1.37 10.04 -39.61 -0.40 -1.76 16 15 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 16 C 0.15 3.65 6.65 -39.11 -0.26 3.39 16 17 O -0.18 -5.08 9.76 0.02 0.00 -5.08 16 18 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 22 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.17 -3.45 9.65 -39.40 -0.38 -3.83 16 27 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.09 7.63 -51.93 -0.40 0.69 16 31 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 32 H 0.06 0.54 7.74 -51.93 -0.40 0.13 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.56 7.61 -51.93 -0.40 0.17 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.34 4.00 7.76 -39.29 -0.30 3.69 16 37 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 38 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 39 H 0.10 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -30.11 350.05 -8.41 -38.52 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.62 Total: 6.66 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.91 Total: -23.22 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.28 Total: -32.88 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.41 Total: -9.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.11 -8.41 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.103 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds