Wall clock time and date at job start Tue Mar 31 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47529 * 2 1 4 4 H 1.09007 * 110.56261 * 307.67770 * 3 2 1 5 5 C 1.54475 * 110.51162 * 70.35503 * 3 2 1 6 6 O 1.44436 * 104.80184 * 142.62462 * 5 3 2 7 7 C 1.44424 * 105.27084 * 319.49206 * 6 5 3 8 8 C 1.54473 * 104.80778 * 40.50899 * 7 6 5 9 9 H 1.09010 * 110.50948 * 94.80237 * 8 7 6 10 10 N 1.46899 * 110.51485 * 217.37346 * 8 7 6 11 11 C 1.46903 * 110.99910 * 273.54940 * 10 8 7 12 12 C 1.50705 * 109.46683 * 179.97438 * 11 10 8 13 13 C 1.38326 * 119.96652 * 269.97770 * 12 11 10 14 14 C 1.38275 * 120.13839 * 180.02562 * 13 12 11 15 15 C 1.38115 * 120.07093 * 359.97438 * 14 13 12 16 16 C 1.38855 * 119.92910 * 0.02562 * 15 14 13 17 17 O 1.35760 * 120.06910 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99715 * 354.46846 * 17 16 15 19 19 H 1.07997 * 120.00242 * 5.05103 * 18 17 16 20 20 C 1.38656 * 119.99822 * 185.05388 * 18 17 16 21 21 N 1.31560 * 119.99706 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46918 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47180 * 210.00205 * 22 20 18 25 25 H 1.48499 * 109.47368 * 330.00347 * 22 20 18 26 26 C 1.38076 * 119.96452 * 90.00130 * 12 11 10 27 27 H 1.09002 * 109.47114 * 300.00440 * 1 2 3 28 28 H 1.09001 * 109.47140 * 59.99494 * 1 2 3 29 29 H 1.08995 * 109.47713 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46865 * 240.00041 * 2 1 3 31 31 H 1.09001 * 109.47140 * 120.00505 * 2 1 3 32 32 H 1.08997 * 110.37339 * 23.79870 * 5 3 2 33 33 H 1.08997 * 110.37761 * 261.45626 * 5 3 2 34 34 H 1.09005 * 110.37208 * 281.67701 * 7 6 5 35 35 H 1.09003 * 110.37138 * 159.34695 * 7 6 5 36 36 H 1.00908 * 110.99811 * 37.50200 * 10 8 7 37 37 H 1.08995 * 109.47427 * 60.00160 * 11 10 8 38 38 H 1.08991 * 109.47141 * 299.99462 * 11 10 8 39 39 H 1.08006 * 119.92622 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.96297 * 180.27685 * 14 13 12 41 41 H 1.07999 * 120.03517 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99420 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03416 * 359.95187 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5796 2.0114 -0.8078 5 6 1.7620 2.1149 1.3626 6 8 2.9180 2.9457 1.6069 7 6 4.0497 2.1592 1.1751 8 6 3.5797 1.4722 -0.1261 9 1 3.8825 2.0547 -0.9964 10 7 4.1158 0.1071 -0.2102 11 6 5.4540 0.1034 -0.8163 12 6 5.9703 -1.3107 -0.8850 13 6 6.6993 -1.8321 0.1687 14 6 7.1752 -3.1290 0.1091 15 6 6.9235 -3.9082 -1.0031 16 6 6.1920 -3.3877 -2.0624 17 8 5.9433 -4.1510 -3.1573 18 6 6.5300 -5.3640 -3.2039 19 1 7.0979 -5.7221 -2.3579 20 6 6.4044 -6.1518 -4.3380 21 7 5.7123 -5.7157 -5.3683 22 14 7.2179 -7.8320 -4.4029 23 1 6.2758 -8.8582 -3.8884 24 1 7.5805 -8.1525 -5.8068 25 1 8.4439 -7.8212 -3.5651 26 6 5.7157 -2.0845 -1.9999 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6640 1.3618 2.1445 33 1 0.8608 2.7255 1.3076 34 1 4.3026 1.4128 1.9283 35 1 4.9060 2.8037 0.9761 36 1 4.1288 -0.3328 0.6978 37 1 6.1291 0.7072 -0.2099 38 1 5.3985 0.5196 -1.8221 39 1 6.8972 -1.2248 1.0396 40 1 7.7403 -3.5347 0.9353 41 1 7.2951 -4.9212 -1.0488 42 1 5.6247 -6.2666 -6.1619 43 1 5.1461 -1.6770 -2.8220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699533700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:59 Heat of formation + Delta-G solvation = -71.598846 kcal Electronic energy + Delta-G solvation = -22886.853446 eV Core-core repulsion = 19510.592726 eV Total energy + Delta-G solvation = -3376.260720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00359 -40.62813 -38.51721 -36.49425 -35.08747 -34.26715 -32.35564 -30.81042 -29.62001 -28.78514 -27.37455 -25.74182 -24.64051 -23.27730 -23.03894 -22.24424 -20.53827 -19.52496 -18.78522 -17.59657 -17.00066 -16.74370 -16.55988 -16.37595 -16.09222 -15.85201 -15.45153 -15.26603 -14.88381 -14.66802 -14.39063 -14.27040 -13.94230 -13.62775 -13.57082 -13.33837 -13.04595 -12.84971 -12.76783 -12.41226 -12.28193 -12.22960 -12.11980 -12.11207 -11.69712 -11.43800 -11.31139 -11.14805 -10.79974 -10.79137 -9.67765 -9.30319 -8.95918 -8.45952 -6.14435 0.54642 0.76754 1.34990 1.44416 1.52587 2.18291 2.75930 2.95083 3.17070 3.41256 3.56561 3.65375 3.78042 3.93449 4.04408 4.13148 4.17989 4.29776 4.34399 4.41502 4.47129 4.55162 4.60760 4.62369 4.70200 4.77136 4.79571 4.81690 4.93642 4.97000 5.08809 5.11899 5.14279 5.32102 5.33022 5.43631 5.60992 5.68916 5.75491 5.76252 5.78836 6.03987 6.06927 6.26976 6.42604 6.98826 7.81058 8.77474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003169 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.048413 B = 8833.603863 C = 9556.299235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.110 4.110 4 H 0.085 0.915 5 C 0.048 3.952 6 O -0.395 6.395 7 C 0.019 3.981 8 C 0.060 3.940 9 H 0.092 0.908 10 N -0.672 5.672 11 C 0.110 3.890 12 C -0.036 4.036 13 C -0.182 4.182 14 C -0.072 4.072 15 C -0.245 4.245 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.182 4.182 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.348 0.652 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.116 0.884 42 H 0.272 0.728 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 13.624 14.781 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.129 4.129 4 H 0.103 0.897 5 C -0.029 4.029 6 O -0.314 6.314 7 C -0.060 4.060 8 C -0.051 4.051 9 H 0.111 0.889 10 N -0.304 5.304 11 C -0.018 4.018 12 C -0.037 4.037 13 C -0.201 4.201 14 C -0.090 4.090 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.573 13.695 13.886 20.032 hybrid contribution 0.742 -0.887 -0.028 1.157 sum -3.830 12.809 13.858 19.255 Atomic orbital electron populations 1.21842 0.95710 1.01603 1.01981 1.21206 0.95018 0.94699 1.02410 1.22549 0.94442 0.97609 0.98295 0.89663 1.23665 0.89542 0.94177 0.95477 1.89101 1.16578 1.40252 1.85436 1.24298 0.90447 0.95858 0.95382 1.22994 0.95104 0.88836 0.98117 0.88941 1.60535 1.23167 1.17352 1.29393 1.20814 0.89227 0.91186 1.00556 1.19550 0.96167 0.95601 0.92390 1.20986 1.03340 0.96140 0.99652 1.21121 0.97551 0.94073 0.96267 1.21296 1.07094 1.01846 0.96254 1.19933 0.94381 0.91809 0.87789 1.83946 1.64463 1.28259 1.37517 1.21814 1.32616 0.91272 1.03250 0.88182 1.26587 0.97655 1.04253 0.93601 1.70193 1.40478 1.39655 1.05670 0.84593 0.78559 0.74631 0.78466 1.18806 1.19611 1.17638 1.20208 1.06992 0.91887 1.01061 0.91837 0.92804 0.93208 0.92325 0.92296 0.91639 0.88063 0.91592 0.88258 0.83191 0.91808 0.90693 0.83470 0.83812 0.86658 0.91900 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.79 71.98 0.70 -1.91 16 2 C -0.10 -1.87 4.36 30.59 0.13 -1.74 16 3 C -0.11 -1.92 3.11 -9.78 -0.03 -1.95 16 4 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 5 C 0.05 0.77 6.51 72.48 0.47 1.24 16 6 O -0.40 -7.96 11.65 -148.98 -1.74 -9.69 16 7 C 0.02 0.31 7.24 72.48 0.52 0.83 16 8 C 0.06 1.09 3.40 45.93 0.16 1.25 16 9 H 0.09 1.70 7.88 -2.38 -0.02 1.68 16 10 N -0.67 -14.39 4.53 -490.34 -2.22 -16.61 16 11 C 0.11 2.59 5.66 85.56 0.48 3.07 16 12 C -0.04 -1.17 5.39 -19.88 -0.11 -1.27 16 13 C -0.18 -5.26 9.70 22.30 0.22 -5.05 16 14 C -0.07 -2.38 10.04 22.25 0.22 -2.16 16 15 C -0.25 -10.65 9.17 22.39 0.21 -10.45 16 16 C 0.11 5.57 6.65 22.58 0.15 5.72 16 17 O -0.23 -14.37 9.76 -22.86 -0.22 -14.59 16 18 C -0.41 -24.38 9.49 67.92 0.64 -23.73 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 21 N -0.92 -57.24 13.67 21.61 0.30 -56.94 16 22 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 26 C -0.18 -7.77 9.65 22.39 0.22 -7.55 16 27 H 0.06 0.88 7.63 -2.39 -0.02 0.86 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.48 7.63 -2.39 -0.02 1.47 16 31 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.07 0.99 7.74 -2.39 -0.02 0.97 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.00 7.61 -2.38 -0.02 0.99 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.35 6.99 7.76 -89.69 -0.70 6.30 16 37 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.07 1.85 8.02 -2.39 -0.02 1.83 16 39 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 43 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -70.84 350.05 2.91 -67.93 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.31 Total: 29.28 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 4.46 Total: -44.59 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.92 Total: -73.55 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.96 Total: -24.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.84 2.91 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.672 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds