Wall clock time and date at job start Tue Mar 31 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 H 1.08999 * 110.56715 * 52.31870 * 3 2 1 5 5 C 1.54481 * 110.51078 * 289.64310 * 3 2 1 6 6 O 1.44424 * 104.80315 * 217.37997 * 5 3 2 7 7 C 1.44423 * 105.27715 * 40.50623 * 6 5 3 8 8 C 1.54480 * 104.80489 * 319.49120 * 7 6 5 9 9 H 1.08994 * 110.51035 * 265.19839 * 8 7 6 10 10 N 1.46897 * 110.50986 * 142.61910 * 8 7 6 11 11 C 1.46905 * 110.99800 * 86.45614 * 10 8 7 12 12 C 1.50704 * 109.47220 * 179.97438 * 11 10 8 13 13 C 1.38326 * 119.96203 * 89.99815 * 12 11 10 14 14 C 1.38279 * 120.13517 * 179.97438 * 13 12 11 15 15 C 1.38125 * 120.06811 * 359.97362 * 14 13 12 16 16 C 1.38856 * 119.93098 * 0.02808 * 15 14 13 17 17 O 1.35755 * 120.06750 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99730 * 5.53499 * 17 16 15 19 19 H 1.07997 * 120.00225 * 354.94179 * 18 17 16 20 20 C 1.38657 * 119.99678 * 174.94651 * 18 17 16 21 21 N 1.31561 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47200 * 60.00089 * 22 20 18 24 24 H 1.48491 * 109.47259 * 299.99819 * 22 20 18 25 25 H 1.48506 * 109.47265 * 179.97438 * 22 20 18 26 26 C 1.38073 * 119.96720 * 270.23629 * 12 11 10 27 27 H 1.08996 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46744 * 300.00210 * 1 2 3 29 29 H 1.08996 * 109.46722 * 60.00328 * 1 2 3 30 30 H 1.08994 * 109.46935 * 239.99831 * 2 1 3 31 31 H 1.08996 * 109.46722 * 119.99672 * 2 1 3 32 32 H 1.08996 * 110.37466 * 98.54597 * 5 3 2 33 33 H 1.09000 * 110.46492 * 336.25084 * 5 3 2 34 34 H 1.08998 * 110.37211 * 200.65858 * 7 6 5 35 35 H 1.08999 * 110.46639 * 78.37219 * 7 6 5 36 36 H 1.00895 * 111.00673 * 322.50524 * 10 8 7 37 37 H 1.09004 * 109.47200 * 59.99969 * 11 10 8 38 38 H 1.09002 * 109.47054 * 299.99677 * 11 10 8 39 39 H 1.07997 * 119.93148 * 359.95907 * 13 12 11 40 40 H 1.07995 * 119.96498 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.03291 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99455 * 0.02562 * 21 20 18 43 43 H 1.08006 * 120.03326 * 0.03979 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5796 2.0114 0.8077 5 6 1.7619 2.1149 -1.3627 6 8 2.9178 2.9457 -1.6070 7 6 4.0497 2.1593 -1.1753 8 6 3.5797 1.4724 0.1262 9 1 3.8824 2.0549 0.9962 10 7 4.1158 0.1073 0.2102 11 6 5.4540 0.1037 0.8162 12 6 5.9701 -1.3105 0.8861 13 6 6.6985 -1.8329 -0.1674 14 6 7.1741 -3.1299 -0.1068 15 6 6.9235 -3.9077 1.0068 16 6 6.1925 -3.3861 2.0659 17 8 5.9441 -4.1482 3.1615 18 6 6.5306 -5.3613 3.2091 19 1 7.0980 -5.7203 2.3632 20 6 6.4053 -6.1479 4.3440 21 7 5.7144 -5.7104 5.3746 22 14 7.2173 -7.8289 4.4097 23 1 8.6846 -7.6768 4.2389 24 1 6.6780 -8.6821 3.3206 25 1 6.9354 -8.4639 5.7222 26 6 5.7110 -2.0849 1.9994 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.8607 2.7254 -1.3076 33 1 1.6629 1.3630 -2.1456 34 1 4.9057 2.8040 -0.9763 35 1 4.3044 1.4129 -1.9276 36 1 4.1289 -0.3326 -0.6977 37 1 5.3985 0.5200 1.8221 38 1 6.1291 0.7076 0.2098 39 1 6.8959 -1.2267 -1.0391 40 1 7.7429 -3.5349 -0.9307 41 1 7.2956 -4.9205 1.0536 42 1 5.2925 -4.8376 5.3403 43 1 5.1384 -1.6779 2.8197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699533702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:03 Heat of formation + Delta-G solvation = -58.884770 kcal Electronic energy + Delta-G solvation = -22924.881915 eV Core-core repulsion = 19549.172520 eV Total energy + Delta-G solvation = -3375.709396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13371 -39.13420 -37.05339 -35.49749 -34.21858 -32.28702 -31.13446 -29.28826 -28.65970 -27.89722 -25.24213 -24.38729 -23.79606 -22.36388 -21.71426 -20.75878 -19.75299 -18.12751 -17.08775 -16.60102 -16.16843 -15.82470 -15.30897 -14.98687 -14.87487 -14.36391 -14.03418 -13.85316 -13.77443 -13.64865 -13.36557 -13.22391 -12.88560 -12.49676 -12.43805 -12.09639 -11.86247 -11.48195 -11.24669 -11.11075 -10.99260 -10.80037 -10.76222 -10.67646 -10.53566 -10.29936 -10.27320 -10.04778 -9.42147 -8.79181 -8.48689 -8.15286 -7.32930 -6.77231 -4.06686 2.02310 2.28073 3.23277 3.27934 3.44770 3.65909 4.10810 4.17670 4.39508 4.51251 4.61909 4.68738 4.86445 4.95128 5.02933 5.15366 5.15681 5.24848 5.27797 5.33120 5.42162 5.48571 5.51872 5.61908 5.66084 5.70231 5.77216 5.81823 5.83470 6.03842 6.10390 6.20104 6.27245 6.42345 6.50176 6.56748 6.81319 6.94079 7.08940 7.17047 7.29374 7.32955 7.55447 7.69957 8.39952 8.91907 9.60943 10.66860 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.003178 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.623669 B = 8807.492887 C = 9526.391802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C -0.112 4.112 4 H 0.084 0.916 5 C 0.046 3.954 6 O -0.377 6.377 7 C 0.016 3.984 8 C 0.058 3.942 9 H 0.093 0.907 10 N -0.665 5.665 11 C 0.104 3.896 12 C -0.048 4.048 13 C -0.206 4.206 14 C -0.075 4.075 15 C -0.228 4.228 16 C 0.155 3.845 17 O -0.202 6.202 18 C -0.473 4.473 19 H 0.083 0.917 20 C 0.010 3.990 21 N -0.881 5.881 22 Si 1.095 2.905 23 H -0.282 1.282 24 H -0.281 1.281 25 H -0.273 1.273 26 C -0.168 4.168 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.344 0.656 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.282 0.718 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 12.778 -12.228 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.132 4.132 4 H 0.102 0.898 5 C -0.031 4.031 6 O -0.295 6.295 7 C -0.063 4.063 8 C -0.053 4.053 9 H 0.111 0.889 10 N -0.296 5.296 11 C -0.024 4.024 12 C -0.049 4.049 13 C -0.225 4.225 14 C -0.094 4.094 15 C -0.247 4.247 16 C 0.102 3.898 17 O -0.107 6.107 18 C -0.548 4.548 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.513 5.513 22 Si 0.919 3.081 23 H -0.208 1.208 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.188 4.188 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.124 11.533 -10.499 16.417 hybrid contribution 0.450 1.464 -1.848 2.400 sum -4.675 12.997 -12.346 18.526 Atomic orbital electron populations 1.21862 0.96610 1.01682 1.01178 1.21310 0.94213 0.94498 1.03849 1.22582 0.94715 0.98128 0.97756 0.89800 1.23600 0.89568 0.94060 0.95864 1.89112 1.15705 1.39357 1.85285 1.24264 0.90533 0.95709 0.95778 1.23008 0.94903 0.89795 0.97632 0.88922 1.60619 1.23869 1.16075 1.29081 1.20863 0.88088 0.93658 0.99761 1.19118 0.97544 0.94252 0.93955 1.20434 1.06460 0.96571 0.99084 1.20707 0.98060 0.93821 0.96775 1.21199 1.06645 1.01657 0.95245 1.19210 0.92716 0.90451 0.87461 1.83669 1.62890 1.27993 1.36134 1.22195 1.35476 0.91773 1.05403 0.89944 1.26527 0.97726 1.04875 0.90399 1.70575 1.28800 1.21596 1.30325 0.83115 0.75566 0.72388 0.76999 1.20765 1.20735 1.19771 1.19993 1.06660 0.92334 0.99812 0.92646 0.92921 0.93352 0.92179 0.89638 0.89302 0.92198 0.89252 0.92302 0.83588 0.90361 0.94678 0.88002 0.87468 0.85560 0.90788 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.79 37.16 0.36 -1.03 16 2 C -0.10 -1.03 4.36 -26.73 -0.12 -1.14 16 3 C -0.11 -1.07 3.11 -89.05 -0.28 -1.35 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.05 0.42 6.51 37.93 0.25 0.67 16 6 O -0.38 -4.28 11.65 -35.23 -0.41 -4.69 16 7 C 0.02 0.16 7.24 37.93 0.27 0.43 16 8 C 0.06 0.58 3.40 -66.15 -0.22 0.36 16 9 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 10 N -0.66 -7.78 4.53 -106.33 -0.48 -8.26 16 11 C 0.10 1.36 5.65 -4.97 -0.03 1.33 16 12 C -0.05 -0.81 5.39 -104.65 -0.56 -1.38 16 13 C -0.21 -3.41 9.70 -39.53 -0.38 -3.79 16 14 C -0.08 -1.37 10.04 -39.61 -0.40 -1.76 16 15 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 16 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.20 -5.71 9.16 0.03 0.00 -5.71 16 18 C -0.47 -13.32 9.49 30.89 0.29 -13.03 16 19 H 0.08 2.18 5.20 -52.49 -0.27 1.91 16 20 C 0.01 0.28 5.49 -17.51 -0.10 0.19 16 21 N -0.88 -26.34 13.70 55.48 0.76 -25.58 16 22 Si 1.10 23.66 29.92 -169.99 -5.09 18.58 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.17 -3.47 9.65 -39.40 -0.38 -3.85 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 30 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 31 H 0.09 1.06 7.63 -51.93 -0.40 0.67 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.56 7.61 -51.93 -0.39 0.16 16 36 H 0.34 3.96 7.76 -39.29 -0.30 3.65 16 37 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.04 0.40 8.06 -51.93 -0.42 -0.01 16 39 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 42 H 0.28 8.63 7.97 -40.82 -0.33 8.30 16 43 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -30.33 349.51 -8.46 -38.80 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.60 Total: 7.82 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -1.91 Total: -26.23 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.28 Total: -33.84 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.41 Total: -10.39 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.09 Total: 18.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.33 -8.46 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.085 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds