Wall clock time and date at job start Tue Mar 31 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 H 1.08999 * 110.56715 * 52.31870 * 3 2 1 5 5 C 1.54481 * 110.51078 * 289.64310 * 3 2 1 6 6 O 1.44424 * 104.80315 * 217.37997 * 5 3 2 7 7 C 1.44423 * 105.27715 * 40.50623 * 6 5 3 8 8 C 1.54480 * 104.80489 * 319.49120 * 7 6 5 9 9 H 1.08994 * 110.51035 * 265.19839 * 8 7 6 10 10 N 1.46897 * 110.50986 * 142.61910 * 8 7 6 11 11 C 1.46905 * 110.99800 * 86.45614 * 10 8 7 12 12 C 1.50704 * 109.47220 * 179.97438 * 11 10 8 13 13 C 1.38326 * 119.96203 * 89.99815 * 12 11 10 14 14 C 1.38279 * 120.13517 * 179.97438 * 13 12 11 15 15 C 1.38125 * 120.06811 * 359.97362 * 14 13 12 16 16 C 1.38856 * 119.93098 * 0.02808 * 15 14 13 17 17 O 1.35755 * 120.06750 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99730 * 5.53499 * 17 16 15 19 19 H 1.07997 * 120.00225 * 354.94179 * 18 17 16 20 20 C 1.38657 * 119.99678 * 174.94651 * 18 17 16 21 21 N 1.31561 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47200 * 60.00089 * 22 20 18 24 24 H 1.48491 * 109.47259 * 299.99819 * 22 20 18 25 25 H 1.48506 * 109.47265 * 179.97438 * 22 20 18 26 26 C 1.38073 * 119.96720 * 270.23629 * 12 11 10 27 27 H 1.08996 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46744 * 300.00210 * 1 2 3 29 29 H 1.08996 * 109.46722 * 60.00328 * 1 2 3 30 30 H 1.08994 * 109.46935 * 239.99831 * 2 1 3 31 31 H 1.08996 * 109.46722 * 119.99672 * 2 1 3 32 32 H 1.08996 * 110.37466 * 98.54597 * 5 3 2 33 33 H 1.09000 * 110.46492 * 336.25084 * 5 3 2 34 34 H 1.08998 * 110.37211 * 200.65858 * 7 6 5 35 35 H 1.08999 * 110.46639 * 78.37219 * 7 6 5 36 36 H 1.00895 * 111.00673 * 322.50524 * 10 8 7 37 37 H 1.09004 * 109.47200 * 59.99969 * 11 10 8 38 38 H 1.09002 * 109.47054 * 299.99677 * 11 10 8 39 39 H 1.07997 * 119.93148 * 359.95907 * 13 12 11 40 40 H 1.07995 * 119.96498 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.03291 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99455 * 0.02562 * 21 20 18 43 43 H 1.08006 * 120.03326 * 0.03979 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5796 2.0114 0.8077 5 6 1.7619 2.1149 -1.3627 6 8 2.9178 2.9457 -1.6070 7 6 4.0497 2.1593 -1.1753 8 6 3.5797 1.4724 0.1262 9 1 3.8824 2.0549 0.9962 10 7 4.1158 0.1073 0.2102 11 6 5.4540 0.1037 0.8162 12 6 5.9701 -1.3105 0.8861 13 6 6.6985 -1.8329 -0.1674 14 6 7.1741 -3.1299 -0.1068 15 6 6.9235 -3.9077 1.0068 16 6 6.1925 -3.3861 2.0659 17 8 5.9441 -4.1482 3.1615 18 6 6.5306 -5.3613 3.2091 19 1 7.0980 -5.7203 2.3632 20 6 6.4053 -6.1479 4.3440 21 7 5.7144 -5.7104 5.3746 22 14 7.2173 -7.8289 4.4097 23 1 8.6846 -7.6768 4.2389 24 1 6.6780 -8.6821 3.3206 25 1 6.9354 -8.4639 5.7222 26 6 5.7110 -2.0849 1.9994 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.8607 2.7254 -1.3076 33 1 1.6629 1.3630 -2.1456 34 1 4.9057 2.8040 -0.9763 35 1 4.3044 1.4129 -1.9276 36 1 4.1289 -0.3326 -0.6977 37 1 5.3985 0.5200 1.8221 38 1 6.1291 0.7076 0.2098 39 1 6.8959 -1.2267 -1.0391 40 1 7.7429 -3.5349 -0.9307 41 1 7.2956 -4.9205 1.0536 42 1 5.2925 -4.8376 5.3403 43 1 5.1384 -1.6779 2.8197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699533702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:02 Heat of formation + Delta-G solvation = -78.026382 kcal Electronic energy + Delta-G solvation = -22925.711958 eV Core-core repulsion = 19549.172520 eV Total energy + Delta-G solvation = -3376.539438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06946 -40.72010 -38.66256 -36.55299 -35.13049 -34.29203 -32.42311 -30.82525 -29.65983 -28.82250 -27.04585 -25.71230 -24.66507 -23.36617 -23.08543 -22.39564 -20.57189 -19.91173 -18.69695 -17.62596 -17.12699 -16.86150 -16.70343 -16.54643 -15.94867 -15.60672 -15.59211 -15.30947 -15.13882 -14.81796 -14.55040 -14.34903 -13.98596 -13.69325 -13.45731 -13.14398 -12.90300 -12.77124 -12.67336 -12.40269 -12.35044 -12.23095 -12.00316 -11.93861 -11.74746 -11.46781 -11.34662 -11.24935 -10.81526 -10.76581 -9.75571 -9.35355 -9.06186 -8.93569 -6.24403 0.46507 0.68279 1.48306 1.60901 1.78500 2.35974 2.72532 2.93925 3.12207 3.27155 3.48191 3.62046 3.74971 3.90276 3.97287 4.06289 4.13944 4.26732 4.27388 4.36745 4.43320 4.52103 4.54098 4.59213 4.64863 4.70156 4.75840 4.79077 4.91022 4.94366 5.02579 5.06409 5.22499 5.23202 5.29359 5.40634 5.57682 5.64115 5.70377 5.72694 5.73570 6.00496 6.09576 6.30394 6.38297 6.87156 7.64220 8.50912 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.003178 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.623669 B = 8807.492887 C = 9526.391802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.110 4.110 4 H 0.085 0.915 5 C 0.048 3.952 6 O -0.395 6.395 7 C 0.019 3.981 8 C 0.060 3.940 9 H 0.093 0.907 10 N -0.673 5.673 11 C 0.110 3.890 12 C -0.036 4.036 13 C -0.179 4.179 14 C -0.072 4.072 15 C -0.243 4.243 16 C 0.113 3.887 17 O -0.255 6.255 18 C -0.488 4.488 19 H 0.091 0.909 20 C -0.045 4.045 21 N -0.918 5.918 22 Si 1.145 2.855 23 H -0.260 1.260 24 H -0.260 1.260 25 H -0.274 1.274 26 C -0.181 4.181 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.348 0.652 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.259 0.741 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 14.295 -15.549 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.129 4.129 4 H 0.104 0.896 5 C -0.029 4.029 6 O -0.313 6.313 7 C -0.060 4.060 8 C -0.050 4.050 9 H 0.111 0.889 10 N -0.305 5.305 11 C -0.018 4.018 12 C -0.037 4.037 13 C -0.198 4.198 14 C -0.090 4.090 15 C -0.263 4.263 16 C 0.063 3.937 17 O -0.163 6.163 18 C -0.564 4.564 19 H 0.108 0.892 20 C -0.241 4.241 21 N -0.553 5.553 22 Si 0.960 3.040 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.198 1.198 26 C -0.201 4.201 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.132 0.868 42 H 0.068 0.932 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.284 13.101 -13.883 19.563 hybrid contribution 0.176 1.294 -1.103 1.709 sum -4.108 14.394 -14.986 21.182 Atomic orbital electron populations 1.21844 0.95694 1.01605 1.02011 1.21204 0.95038 0.94706 1.02368 1.22549 0.94425 0.97596 0.98312 0.89631 1.23663 0.89555 0.94196 0.95462 1.89101 1.16562 1.40228 1.85437 1.24292 0.90460 0.95883 0.95362 1.22995 0.95108 0.88785 0.98149 0.88903 1.60534 1.23098 1.17421 1.29421 1.20821 0.89295 0.91043 1.00637 1.19568 0.96093 0.95651 0.92342 1.21028 1.03051 0.96032 0.99653 1.21147 0.97533 0.94095 0.96220 1.21319 1.06913 1.01846 0.96195 1.19817 0.94718 0.91636 0.87493 1.83648 1.65315 1.28718 1.38609 1.22581 1.35518 0.92378 1.05898 0.89187 1.28392 0.97484 1.08471 0.89767 1.70715 1.31873 1.20901 1.31807 0.82594 0.75837 0.67994 0.77551 1.18466 1.18422 1.19837 1.20215 1.06868 0.91769 1.01254 0.93221 0.92774 0.91823 0.92317 0.92358 0.88062 0.91643 0.88251 0.91588 0.83180 0.90634 0.91696 0.83236 0.83663 0.86794 0.93244 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.79 71.98 0.70 -1.86 16 2 C -0.10 -1.83 4.36 30.60 0.13 -1.69 16 3 C -0.11 -1.87 3.11 -9.78 -0.03 -1.90 16 4 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 5 C 0.05 0.75 6.51 72.49 0.47 1.23 16 6 O -0.39 -7.82 11.65 -148.98 -1.74 -9.56 16 7 C 0.02 0.30 7.24 72.49 0.53 0.83 16 8 C 0.06 1.06 3.40 45.93 0.16 1.22 16 9 H 0.09 1.66 7.88 -2.39 -0.02 1.64 16 10 N -0.67 -14.02 4.53 -490.32 -2.22 -16.24 16 11 C 0.11 2.52 5.65 85.56 0.48 3.00 16 12 C -0.04 -1.13 5.39 -19.88 -0.11 -1.23 16 13 C -0.18 -5.09 9.70 22.30 0.22 -4.87 16 14 C -0.07 -2.37 10.04 22.25 0.22 -2.15 16 15 C -0.24 -10.62 9.17 22.39 0.21 -10.42 16 16 C 0.11 5.63 6.65 22.58 0.15 5.78 16 17 O -0.25 -15.41 9.16 -22.81 -0.21 -15.62 16 18 C -0.49 -28.98 9.49 67.92 0.64 -28.33 16 19 H 0.09 4.97 5.20 -2.91 -0.02 4.96 16 20 C -0.05 -2.64 5.49 84.83 0.47 -2.17 16 21 N -0.92 -58.28 13.70 21.61 0.30 -57.98 16 22 Si 1.14 48.55 29.92 68.60 2.05 50.60 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C -0.18 -7.63 9.65 22.39 0.22 -7.41 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.86 7.63 -2.39 -0.02 0.84 16 30 H 0.06 1.12 7.56 -2.39 -0.02 1.11 16 31 H 0.06 1.44 7.63 -2.39 -0.02 1.43 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 0.97 7.75 -2.39 -0.02 0.95 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 0.98 7.61 -2.39 -0.02 0.96 16 36 H 0.35 6.82 7.76 -89.70 -0.70 6.13 16 37 H 0.08 1.81 8.02 -2.38 -0.02 1.79 16 38 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 41 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 42 H 0.26 17.19 7.97 -92.71 -0.74 16.45 16 43 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -71.55 349.51 2.98 -68.57 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.34 Total: 30.21 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 4.46 Total: -49.99 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.92 Total: -74.22 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.94 Total: -25.17 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -71.55 2.98 -68.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.454 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds