Wall clock time and date at job start Tue Mar 31 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 H 1.09003 * 110.45761 * 52.39663 * 3 2 1 5 5 C 1.54475 * 110.62819 * 289.71117 * 3 2 1 6 6 O 1.44429 * 104.80426 * 265.27650 * 5 3 2 7 7 C 1.44428 * 105.27439 * 319.48841 * 6 5 3 8 8 C 1.54484 * 104.80469 * 40.50847 * 7 6 5 9 9 H 1.08999 * 110.62933 * 94.72290 * 8 7 6 10 10 N 1.46892 * 110.51384 * 217.38080 * 8 7 6 11 11 C 1.46899 * 110.99750 * 269.64260 * 10 8 7 12 12 C 1.50706 * 109.47341 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96338 * 89.99640 * 12 11 10 14 14 C 1.38283 * 120.13551 * 179.97438 * 13 12 11 15 15 C 1.38126 * 120.06873 * 0.02562 * 14 13 12 16 16 C 1.38855 * 119.92985 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.07004 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99805 * 5.54346 * 17 16 15 19 19 H 1.07997 * 119.99755 * 354.93616 * 18 17 16 20 20 C 1.38656 * 119.99877 * 174.94518 * 18 17 16 21 21 N 1.31551 * 120.00203 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47198 * 59.99643 * 22 20 18 24 24 H 1.48505 * 109.47025 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47164 * 299.99546 * 22 20 18 26 26 C 1.38073 * 119.96379 * 270.27887 * 12 11 10 27 27 H 1.09001 * 109.47222 * 60.00176 * 1 2 3 28 28 H 1.09010 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47173 * 299.99871 * 1 2 3 30 30 H 1.08992 * 109.47489 * 240.00121 * 2 1 3 31 31 H 1.09001 * 109.47222 * 119.99824 * 2 1 3 32 32 H 1.08997 * 110.37344 * 24.10403 * 5 3 2 33 33 H 1.09004 * 110.37268 * 146.44507 * 5 3 2 34 34 H 1.09004 * 110.36861 * 281.68109 * 7 6 5 35 35 H 1.08992 * 110.37628 * 159.34195 * 7 6 5 36 36 H 1.00899 * 111.00516 * 33.59188 * 10 8 7 37 37 H 1.09003 * 109.47704 * 60.00061 * 11 10 8 38 38 H 1.09006 * 109.47085 * 299.99779 * 11 10 8 39 39 H 1.08000 * 119.93343 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.96216 * 180.02562 * 14 13 12 41 41 H 1.07995 * 120.03668 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99787 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03730 * 0.03869 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5794 2.0094 0.8091 5 6 1.7616 2.1181 -1.3610 6 8 2.9790 1.9398 -2.1174 7 6 4.0494 2.1626 -1.1736 8 6 3.5796 1.4725 0.1262 9 1 3.9774 0.4596 0.1886 10 7 3.9846 2.2564 1.3006 11 6 5.3066 1.8359 1.7838 12 6 5.6873 2.6600 2.9868 13 6 5.3426 2.2303 4.2557 14 6 5.6906 2.9834 5.3620 15 6 6.3833 4.1678 5.2030 16 6 6.7307 4.6017 3.9305 17 8 7.4119 5.7650 3.7709 18 6 7.8212 6.3933 4.8915 19 1 7.5335 6.0120 5.8601 20 6 8.6114 7.5290 4.8003 21 7 8.9622 7.9932 3.6204 22 14 9.1779 8.3998 6.3528 23 1 9.9858 7.4658 7.1775 24 1 10.0047 9.5776 5.9860 25 1 7.9939 8.8480 7.1290 26 6 6.3746 3.8459 2.8208 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9274 1.6290 -1.8639 33 1 1.5529 3.1790 -1.2224 34 1 4.1915 3.2303 -1.0063 35 1 4.9725 1.7077 -1.5325 36 1 3.9714 3.2447 1.0978 37 1 6.0449 1.9810 0.9951 38 1 5.2737 0.7823 2.0613 39 1 4.8007 1.3048 4.3826 40 1 5.4205 2.6451 6.3514 41 1 6.6545 4.7557 6.0673 42 1 9.5153 8.7875 3.5567 43 1 6.6389 4.1834 1.8295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699533704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:05 Heat of formation + Delta-G solvation = -56.517083 kcal Electronic energy + Delta-G solvation = -22642.234518 eV Core-core repulsion = 19266.627793 eV Total energy + Delta-G solvation = -3375.606725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04238 -39.04274 -36.92222 -35.27168 -34.44896 -32.30033 -31.14167 -29.25925 -28.64074 -27.87413 -25.46229 -24.43806 -24.26642 -21.74017 -21.43331 -20.81580 -20.20949 -17.71224 -17.10849 -16.56829 -16.42829 -15.65263 -15.09594 -14.79064 -14.69679 -14.45329 -14.21018 -14.01784 -13.67878 -13.58805 -13.44057 -13.00704 -12.57267 -12.46675 -12.26781 -11.89466 -11.79298 -11.76979 -11.63682 -11.28053 -11.15041 -10.86788 -10.80339 -10.75676 -10.66378 -10.59033 -10.41317 -9.93050 -9.35899 -8.84500 -8.47086 -8.07980 -7.23911 -6.45284 -4.04734 2.07864 2.37915 3.12604 3.13662 3.16430 3.72908 3.96016 4.15906 4.43443 4.53454 4.63833 4.75735 4.89334 4.95055 5.06047 5.11082 5.16369 5.23243 5.27029 5.29255 5.47894 5.51444 5.57954 5.61144 5.67081 5.75383 5.79297 5.82621 5.84054 5.95575 6.01695 6.10284 6.18055 6.31209 6.56615 6.64323 6.88989 7.00676 7.05819 7.23693 7.36769 7.38607 7.42284 7.81174 7.99507 9.00472 9.70426 10.72823 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.002907 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.608226 B = 9628.951815 C =10270.286915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.115 4.115 4 H 0.097 0.903 5 C 0.044 3.956 6 O -0.375 6.375 7 C 0.015 3.985 8 C 0.059 3.941 9 H 0.092 0.908 10 N -0.671 5.671 11 C 0.105 3.895 12 C -0.049 4.049 13 C -0.189 4.189 14 C -0.077 4.077 15 C -0.231 4.231 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.185 4.185 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.347 0.653 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.270 0.730 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 -13.378 -5.792 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.134 4.134 4 H 0.115 0.885 5 C -0.033 4.033 6 O -0.293 6.293 7 C -0.064 4.064 8 C -0.052 4.052 9 H 0.110 0.890 10 N -0.303 5.303 11 C -0.023 4.023 12 C -0.049 4.049 13 C -0.208 4.208 14 C -0.095 4.095 15 C -0.250 4.250 16 C 0.099 3.901 17 O -0.083 6.083 18 C -0.469 4.469 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.205 4.205 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.167 0.833 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.463 -13.493 -5.882 19.287 hybrid contribution 0.895 0.968 0.452 1.394 sum -11.568 -12.525 -5.430 17.893 Atomic orbital electron populations 1.21820 0.95788 1.01605 1.01852 1.21502 0.95815 0.95420 1.02205 1.22592 0.95149 0.97490 0.98163 0.88514 1.23581 0.88412 0.99768 0.91524 1.89115 1.15172 1.91845 1.33141 1.24281 0.91861 1.00091 0.90164 1.23059 0.95146 0.98519 0.88459 0.89025 1.60603 1.28523 1.08973 1.32188 1.20859 0.88589 0.98634 0.94210 1.19140 0.97559 0.94351 0.93878 1.20412 1.06889 1.01568 0.91931 1.20750 0.96875 0.94253 0.97664 1.21196 1.06803 0.99442 0.97574 1.19303 0.91237 0.86640 0.92904 1.83975 1.61877 1.28436 1.34030 1.21266 1.31854 1.09017 0.84735 0.89167 1.25273 0.96089 0.96472 0.98634 1.70024 1.34311 1.22583 1.23017 0.85793 0.78975 0.78782 0.79952 1.19516 1.20283 1.19504 1.20024 1.07184 0.96080 0.97195 0.92770 0.92762 0.92507 0.91861 0.91493 0.89034 0.92298 0.91956 0.89141 0.83342 0.94533 0.90498 0.87625 0.87495 0.85655 0.91993 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.78 37.16 0.36 -0.73 16 2 C -0.11 -0.93 5.18 -26.73 -0.14 -1.07 16 3 C -0.11 -1.08 2.89 -89.05 -0.26 -1.34 16 4 H 0.10 0.98 7.97 -51.93 -0.41 0.57 16 5 C 0.04 0.42 7.04 37.93 0.27 0.69 16 6 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16 7 C 0.01 0.16 7.31 37.94 0.28 0.44 16 8 C 0.06 0.62 3.09 -66.14 -0.20 0.41 16 9 H 0.09 0.93 7.41 -51.93 -0.38 0.54 16 10 N -0.67 -8.26 6.24 -106.33 -0.66 -8.93 16 11 C 0.11 1.41 5.67 -4.97 -0.03 1.39 16 12 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 13 C -0.19 -3.24 9.70 -39.53 -0.38 -3.63 16 14 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 15 C -0.23 -5.00 9.17 -39.39 -0.36 -5.36 16 16 C 0.15 3.66 6.65 -39.11 -0.26 3.40 16 17 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 18 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 22 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.18 -3.81 9.65 -39.39 -0.38 -4.19 16 27 H 0.05 0.36 6.73 -51.93 -0.35 0.01 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.76 6.49 -51.93 -0.34 0.42 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.35 4.48 8.07 -39.29 -0.32 4.16 16 37 H 0.04 0.47 8.09 -51.93 -0.42 0.06 16 38 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.11 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -30.25 351.23 -8.46 -38.70 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.54 Total: 6.92 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.87 Total: -22.89 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.10 Total: -33.49 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.41 Total: -10.00 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.25 -8.46 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699533704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.816 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds